These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3001#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence [CCGGTGCCGACACTTTCGGGTCTGTGACGACGGTGTGTGTTGTTTCGAAAACGCTAGAAACACCGTGACACCCCCCCCCCCACCGCTCCCCCACTTCCCACCCACCAGGCTTGGCGGGGAGGGTTGTTGCTTGTGTGTGTACATACATAGCTACAGTCACATACAGGAAAGGTGAAAAGTGCGTGAAGTGAGTGCGTGCGTGGTGCCGGTGGATGCGCTTTTAACAGGAAGCGAAAGCGCTAGATTCCGGCGACCGGAAGTGGCACCACCACCGGCAAACCCGTCAGAGTGCAACCAGTGAGACCAGAATAGAAGAAGAAGAAGAAAGGGAGGAAAAAAAAACAAAACGAATTTGGGGGACCATCTCACCCCCCCCCCCCCCCCCAAACACACAGCCACAGGAAGTGCAATTCGAGTGGGGCGCGATTTTCATCGATTTTCGGCCCGGTGGTGGTGTGTGTGTGTGTGTAATACGTGTGCCGACCAAACACCGAGATGCTTCCAAACAGTGCGTGATACAGTGCGTGTGTGCGTGAGAGAGAGAGAGATAGCGAAAGTGTTTGTGTGTCTGCGTCGTTCTCGTGTGACAACACGTGTGTGCAATACACGCCTGCGAGC] [+] EMBL BM593593 [CCGGTGCCGACACTTTCGGGTCTGTGACGACGGTGTGTGTTGTTTCGAAAACGCTAGAAACACCGTGACACCCCCCCCCCCACCGCTCCCCCACTTCCCACCCACCAGGCTTGGCGGGGAGGGTTGTTGCTTGTGTGTGTACATACATAGCTACAGTCACATACAGGAAAGGTGAAAAGTGCGTGAAGTGAGTGCGTGCGTGGTGCCGGTGGATGCGCTTTTAACAGGAAGCGAAAGCGCTAGATTCCGGCGACCGGAAGTGGCACCACCACCGGCAAACCCGTCAGAGTGCAACCAGTGAGACCAGAATAGAAGAAGAAGAAGAAAGGGAGGAAAAAAAAACAAAACGAATTTGGGGGACCATCTCACCCCCCCCCCCCCCCCCAAACACACAGCCACAGGAAGTGCAATTCGAGTGGGGCGCGATTTTCATCGATTTTCGGCCCGGTGGTGGTGTGTGTGTGTGTGTAATACGTGTGCCGACCAAACACCGAGATGCTTCCAAACAGTGCGTGATACAGTGCGTGTGTGCGTGAGAGAGAGAGAGATAGCGAAAGTGTTTGTGTGTCTGCGTCGTTCTCGTGTGACAACACGTGTGTGCAATACACGCCTGCGAGC] consensusID : consensus_3001#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 264 fasta sequence [AGTTGCTTGTGTGTGTACATACATACCTACATACATAGCCACAGCCACATACAGGAAAGGGGAAAAGCGCGCGAAGTGAGAGCGTGCGTGGTGCCGGTGGAAGCGCTCTTAACAGGAAGCGAAAGCGCTAGATCCCGGCGACCGGAAGTGGCACCACCACCGGCAAACCCGCCAGAGTGCAACCAGCGAGACCAGAACAGAAGAAGAAGAAGAAAAGGAGGGAAAAAAACAAAACGAATAGGGGGGACCATCCCCCCCCAAACA] [+] EMBL BX611445 [AGTTGCTTGTGTGTGTACATACATACCTACATACATAGCCACAGCCACATACAGGAAAGGGGAAAAGCGCGCGAAGTGAGAGCGTGCGTGGTGCCGGTGGAAGCGCTCTTAACAGGAAGCGAAAGCGCTAGATCCCGGCGACCGGAAGTGGCACCACCACCGGCAAACCCGCCAGAGTGCAACCAGCGAGACCAGAACAGAAGAAGAAGAAGAAAAGGAGGGAAAAAAACAAAACGAATAGGGGGGACCATCCCCCCCCAAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3001#0 CCGGTGCCGACACTTTCGGGTCTGTGACGACGGTGTGTGTTGTTTCGAAAACGCTAGAAA 60 consensus_3001#1 ------------------------------------------------------------ consensus_3001#0 CACCGTGACACCCCCCCCCCCACCGCTCCCCCACTTCCCACCCACCAGGCTTGGCGGGGA 120 consensus_3001#1 ----------------------------------------------------AGTTGCTT 8 * * consensus_3001#0 GGGTTGTTGCTTGTGTGTGTACATACATAGCTACAGTCACATACAGGAAAGGTGAAAAGT 180 consensus_3001#1 GTGTGTGTACATACATACCTACATACATAGCCACAGCCACATACAGGAAAGGGGAAAAGC 68 * ** * * * * ************ **** *************** ****** consensus_3001#0 GCGTGAAGTGAGTGCGTGCGTGGTGCCGGTGGATGCGCTTTTAACAGGAAGCGAAAGCGC 240 consensus_3001#1 GCGCGAAGTGAGAGCGTGCGTGGTGCCGGTGGAAGCGCTCTTAACAGGAAGCGAAAGCGC 128 *** ******** ******************** ***** ******************** consensus_3001#0 TAGATTCCGGCGACCGGAAGTGGCACCACCACCGGCAAACCCGTCAGAGTGCAACCAGTG 300 consensus_3001#1 TAGATCCCGGCGACCGGAAGTGGCACCACCACCGGCAAACCCGCCAGAGTGCAACCAGCG 188 ***** ************************************* ************** * consensus_3001#0 AGACCAGAATAGAAGAAGAAGAAGAAAGGGAGGAAAAAAAAACAAAACGAATTTGGGGGA 360 consensus_3001#1 AGACCAGAACAGAAGAAGAAGAAGAAAAGGAGGGAAAAAAA-CAAAACGAATAGGGGGGA 247 ********* ***************** ***** ******* ********** ****** consensus_3001#0 CCATCTCACCCCCCCCCCCCCCCCCAAACACACAGCCACAGGAAGTGCAATTCGAGTGGG 420 consensus_3001#1 CCATCCCCCCCCAAACA------------------------------------------- 264 ***** * **** * consensus_3001#0 GCGCGATTTTCATCGATTTTCGGCCCGGTGGTGGTGTGTGTGTGTGTGTAATACGTGTGC 480 consensus_3001#1 ------------------------------------------------------------ consensus_3001#0 CGACCAAACACCGAGATGCTTCCAAACAGTGCGTGATACAGTGCGTGTGTGCGTGAGAGA 540 consensus_3001#1 ------------------------------------------------------------ consensus_3001#0 GAGAGAGATAGCGAAAGTGTTTGTGTGTCTGCGTCGTTCTCGTGTGACAACACGTGTGTG 600 consensus_3001#1 ------------------------------------------------------------ consensus_3001#0 CAATACACGCCTGCGAGC 618 consensus_3001#1 ------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||