These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3007#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 920 fasta sequence [GGCAAGAATCGCGCACGAGGCGCAACTTTACCGATGTCAATTCGGCCATTGAGATAGCGGCGGCTGGCCCGGGTGTGTACAAAGCCGTGTGGCTGCTAATACTCGCCCTCGCGATGAAGCTCATCATGACGATCTTTACGTTTGGCATGAAGGTACCGTGCGGGTTGTTCATTCCTTCCCTTGCACTCGGTGCCATTACGGGCCGTATCGTTGGCATTGCGATGGAACAGCTGGCGTACAACTATCCCAAAATATGGATCTTCTCTGGGGAGTGTTCCACCGGGGACGATTGCATTACGCCGGGGCTGTATGCGATGGTCGGTGCAGCCGCCGTGCTTGGCGGGGTCACCAGAATGACGGTGTCCCTTGTGGTTATTATGTTCGAGCTAACCGGCGGTGTCCGATACATCGTGCCGCTGATGGCGGCAGCCATGGCTTCCAAATGGGTTGGCGATGCCCTTGGTCGACAGGGCATTTACGATGCGCACATAGCGCTGAACGGTTATCCGTTCCTGGACAGCAAGGACGAATTCCAGCACACAACGCTAAGCGGCCGATGTGATGCAGCCAAAACGGCAATGAAACGCTGGCGGTGATCACTCAGGACTCGATGACGGTGGGACGACAATCGAGGACCTACTCAAAGAGACTGGAAGCACAACGGCTACCCGGTGGGTCGTNTTCCGAAGGAGCAATCAATTACTTTGGGTTCGGCTTCCGTGCTTGCGAAGGGATCTAAANTCCTAAGCCTTTAGGCTTAATTNGCGGCTGAAAGGCCATTCCATTTGGANCGGGGGCATTCACTTTGGGCNCCANGTACNCGCNGGGTAAATCCNTTCGCAACNATTCAGGGCCCGAAACCGGGTCCCAANAACCTTGGGGCCCCGAGGTCAGCCCAGAGTTGAAGAAGTTGAGAGAGA] [+] EMBL BX467465 [GGCAAGAATCGCGCACGAGGCGCAACTTTACCGATGTCAATTCGGCCATTGAGATAGCGGCGGCTGGCCCGGGTGTGTACAAAGCCGTGTGGCTGCTAATACTCGCCCTCGCGATGAAGCTCATCATGACGATCTTTACGTTTGGCATGAAGGTACCGTGCGGGTTGTTCATTCCTTCCCTTGCACTCGGTGCCATTACGGGCCGTATCGTTGGCATTGCGATGGAACAGCTGGCGTACAACTATCCCAAAATATGGATCTTCTCTGGGGAGTGTTCCACCGGGGACGATTGCATTACGCCGGGGCTGTATGCGATGGTCGGTGCAGCCGCCGTGCTTGGCGGGGTCACCAGAATGACGGTGTCCCTTGTGGTTATTATGTTCGAGCTAACCGGCGGTGTCCGATACATCGTGCCGCTGATGGCGGCAGCCATGGCTTCCAAATGGGTTGGCGATGCCCTTGGTCGACAGGGCATTTACGATGCGCACATAGCGCTGAACGGTTATCCGTTCCTGGACAGCAAGGACGAATTCCAGCACACAACGCTAAGCGGCCGATGTGATGCAGCCAAAACGGCAATGAAACGCTGGCGGTGATCACTCAGGACTCGATGACGGTGGGACGACAATCGAGGACCTACTCAAAGAGACTGGAAGCACAACGGCTACCCGGTGGGTCGTNTTCCGAAGGAGCAATCAATTACTTTGGGTTCGGCTTCCGTGCTTGCGAAGGGATCTAAANTCCTAAGCCTTTAGGCTTAATTNGCGGCTGAAAGGCCATTCCATTTGGANCGGGGGCATTCACTTTGGGCNCCANGTACNCGCNGGGTAAATCCNTTCGCAACNATTCAGGGCCCGAAACCGGGTCCCAANAACCTTGGGGCCCCGAGGTCAGCCCAGAGTTGAAGAAGTTGAGAGAGA] consensusID : consensus_3007#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence [CCGCAACGAGCACTCGGTGCTGTTCTACGTGGAGTACAACAAACCGTGGATCTTCTTCGAGCTGGTACCATTTATCGGGCTGGGCATTATTGGGGGCATCATTGCGACGCTATTTATCAAGGCGAACCTTTGGTGGTGCCGGTTCCGCAAGTACAGCAAGCTTGGCCAGTACCCAGTGACGGAGGTGCTGATCGTCACGTTCATTACCGCGGTTATTGCGTACCCCAATCCGTACACGCGCATGAACACGAGCGAGCTGATCTATCTCCTCTTCAGCCAGTGCGGCATCTCGAACCAGGATCCGTTGTGTGACTACAATCGCAACTTTACCGATGTCAATTCGGCCATAGAGATAGCGGCGGCCGGGCCGGGCGTCTACAAAGCCGTGTGGCTGCTAATACTCGCCCTCGCGATGAAGCTCATCATGACGATCTTCACGTTTGGCATGAAGGTACCGTGCGGGTTGTTCATTCCTTCCCTTGCACTCGGTGCCATTACGGGCCGTATCGTTGGCATTGCGATGGAACAGCTGGCGTACAACTATCCCAAAATATGGATCTTCTCTGGGGAGTGTTCCACCGGGGACGATTGCATTACGCCGGGGTTGT] [+] EMBL BM578307 [CCGCAACGAGCACTCGGTGCTGTTCTACGTGGAGTACAACAAACCGTGGATCTTCTTCGAGCTGGTACCATTTATCGGGCTGGGCATTATTGGGGGCATCATTGCGACGCTATTTATCAAGGCGAACCTTTGGTGGTGCCGGTTCCGCAAGTACAGCAAGCTTGGCCAGTACCCAGTGACGGAGGTGCTGATCGTCACGTTCATTACCGCGGTTATTGCGTACCCCAATCCGTACACGCGCATGAACACGAGCGAGCTGATCTATCTCCTCTTCAGCCAGTGCGGCATCTCGAACCAGGATCCGTTGTGTGACTACAATCGCAACTTTACCGATGTCAATTCGGCCATAGAGATAGCGGCGGCCGGGCCGGGCGTCTACAAAGCCGTGTGGCTGCTAATACTCGCCCTCGCGATGAAGCTCATCATGACGATCTTCACGTTTGGCATGAAGGTACCGTGCGGGTTGTTCATTCCTTCCCTTGCACTCGGTGCCATTACGGGCCGTATCGTTGGCATTGCGATGGAACAGCTGGCGTACAACTATCCCAAAATATGGATCTTCTCTGGGGAGTGTTCCACCGGGGACGATTGCATTACGCCGGGGTTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3007#0 GGCAAGAATCGCGCACGAGGCGCAACTTTACCGATGTCAATTCGGCCATTGAGATAGCGG 60 consensus_3007#1 ------------------------------------------------------------ consensus_3007#0 CGGCTGGCCCGGGTGTGTACAAAGCCGTGTGGCTGCTAATACTCGCCCTCGCGATGAAGC 120 consensus_3007#1 ------------------------------------------------------------ consensus_3007#0 TCATCATGACGATCTTTACGTTTGGCATGAAGGTACCGTGCGGGTTGTTCATTCCTTCCC 180 consensus_3007#1 ------------------------------------------------------------ consensus_3007#0 TTGCACTCGGTGCCATTACGGGCCGTATCGTTGGCATTGCGATGGAACAGCTGGCGTACA 240 consensus_3007#1 ----------------------CCGCAACGAGCACTCGGTGCTGTTCTACGTGGAGTACA 38 *** * ** * * * ** * *** ***** consensus_3007#0 ACTATCCCAAAATATGGATCTTCTCTGGGGAGTGTTCCACCGGGGACGATTGCATTACGC 300 consensus_3007#1 AC------AAACCGTGGATCTTCTTCGAG-----------CTGGTACCATT-TATCGGGC 80 ** *** ********** * * * ** ** *** ** ** consensus_3007#0 CGGGGCTGTATGCGATGGTCGGTGCAGCCGCCGTGCTTGGCGGGGTCACCAGAATGACGG 360 consensus_3007#1 TGGGCATTATTGGGGGCATCATTGC-GACGC--TATTTATCAAGGCGAACCTT-TGGTGG 136 *** * ** * ** *** * *** * ** * ** * * ** ** consensus_3007#0 TGTCCCTTGTGGTTATTATGTTCGAGCTAACCGGCGGTGTCCGATACATCGTGCCGCTGA 420 consensus_3007#1 TGCCGGTTCCG-----CAAGTAC-AGCAAGCT-----TGGCCAGTACCCAGTGACGGAGG 185 ** * ** * * ** * *** * * ** ** *** *** ** * consensus_3007#0 TGGCGGCAGCCATGGCTTCCAAATGGGTTGGCGATGCCCTTGGTCGACAGGGCATTTACG 480 consensus_3007#1 TGCTGATCGTCACGTTCATTACCGCGGTTATTGCGTACCCCAATCCGTA---CACGCGC- 241 ** * * ** * * **** * ** ** * ** * consensus_3007#0 ATGCGCACATA-GCGCTGAACGGTTATCCGTTCCTGGACAGCAAGGACGAATTCCAGCAC 539 consensus_3007#1 ATGAACACGAGCGAGCTGATC---TATCTCCTCTT---CAGCCAGTGCGG---------- 285 *** *** * ***** * **** ** * **** ** ** consensus_3007#0 ACAACGCTAAGCGGCCGATGTGATGCAGCCAAAACGGCAATGAAACGCTGGCGGTGATCA 599 consensus_3007#1 -CATCTCGAACCAGGATCCGTTGTGTGACTACAATCGC-----AACTTTACCGATG-TCA 338 ** * * ** * * ** ** * * ** ** *** * ** ** *** consensus_3007#0 CTCAGGACTCGATGACGGTGGGACGACAATCGAGGACCTACTCAAAGAGACTGGAAGCAC 659 consensus_3007#1 ATTCGGCCATAGAGATAGCGGCGGCCGGGCCGGGCGTCTACA-AAGCCGTGTGGCTGC-T 396 * ** * ** * ** ** * **** ** * *** ** consensus_3007#0 AACGGCTACCCGGTGGGTCGTNTTCCGAAGGAGCAATCAATTACTTTGGGTTCGGCTTCC 719 consensus_3007#1 AATACTCGCCCTCGCGATGAAGCTCATCATGACGATCTTCACGTTTGGCATGAAGGTACC 456 ** *** * * ** * ** * ** * * * * ** consensus_3007#0 GTGCTTGCGAAGGGATCTAAANTCCTAAGCCTTTAGGCTTAATTNGCGGCTGAAAGGCCA 779 consensus_3007#1 GTGC-------GGGTTGTTCATTCCT--TCCCTTGCACTCGGT--GCCATT-ACGGGCCG 504 **** *** * * * **** ** ** ** * ** * * **** consensus_3007#0 TTCCATTTGGANCGGGGGCATTCACTTTGGGCNCCANGTACNCGCNGGGTAAATCCNTTC 839 consensus_3007#1 TATCGTTGGCATTGCGATGGAACAGCTGGCGTACAACTATCCCAAAATATGGATCTTCTC 564 * * ** * * * * ** * * * * * * * * *** ** consensus_3007#0 GCAACNATTCAGGGCCCGAAACCGGGTCCCAANAACCTTGGGGCCCCGAGGTCAGCCCAG 899 consensus_3007#1 TGGGGAGTGTTCCACCGGGGAC--GATTGCATTA-CGCCGGGGTTGT------------- 608 * ** * ** * * ** * * **** consensus_3007#0 AGTTGAAGAAGTTGAGAGAGA 920 consensus_3007#1 --------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||