These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3010#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 733 fasta sequence [TTTTTTCGCTGCTCTGTCGTGCGAATGGTACATTTTCGGAAGGAAGTGAATATATTTCGTCAAGTGGTGATTCGTACATAAATATATATATCCTTTCGTGCTACCCAGCGCAGAAACTGTTTAGCGCTGAGTTTCATTGCCATTTGTTCAAATCAATTGTATCATGCGTACGCTTCGTTTACCGTACTTCGCATAGAAAGAGAGAAGCGGAGAGAAAAGAAAGGAAACCAGACAGAAAAACGTATAGTGAAAGCTGCACGGCGCAACTTCCTCCACCGTGTGTGAAAAGCTGCAGCGGGGGCGTACTCACAATCAACTACGAAAGCCATGGCGGAAATCGGCGATGATGTGCCGTTGGCCGATAGGATCCGCGGCAAGACCGTGCATCAGCGCGGTGCTCCCGAAAGTGTGGAGTCCAACAGCTCGACAAGCTCCGGCAGCAGCGAGCAGGACGGAGAGGACGGAGGAACGTACATGGACAACAGCCCGTGGGTGTTTATGCCCGAGCCGCTGTTTATAAAAATCTTTCTTCAACTTCGAGCGCGCGATGTCCTGAACGCTGGCCAATGCTGCAAACGTTGGTACAAACTGTCCAAAGATGATTACATCTGGCGAAAGTACTTCCGCCAGGAGTTTAACGTAGACCCATCGATCCAGCTGAAACGAGGTGCGGAAAGCTGGCGGGCCGAGTACCGACGCTTGACCAACAATGTGCCGATGGTAATGACGGATG] [+] EMBL CNS09QZP [TTTTTTCGCTGCTCTGTCGTGCGAATGGTACATTTTCGGAAGGAAGTGAATATATTTCGTCAAGTGGTGATTCGTACATAAATATATATATCCTTTCGTGCTACCCAGCGCAGAAACTGTTTAGCGCTGAGTTTCATTGCCATTTGTTCAAATCAATTGTATCATGCGTACGCTTCGTTTACCGTACTTCGCATAGAAAGAGAGAAGCGGAGAGAAAAGAAAGGAAACCAGACAGAAAAACGTATAGTGAAAGCTGCACGGCGCAACTTCCTCCACCGTGTGTGAAAAGCTGCAGCGGGGGCGTACTCACAATCAACTACGAAAGCCATGGCGGAAATCGGCGATGATGTGCCGTTGGCCGATAGGATCCGCGGCAAGACCGTGCATCAGCGCGGTGCTCCCGAAAGTGTGGAGTCCAACAGCTCGACAAGCTCCGGCAGCAGCGAGCAGGACGGAGAGGACGGAGGAACGTACATGGACAACAGCCCGTGGGTGTTTATGCCCGAGCCGCTGTTTATAAAAATCTTTCTTCAACTTCGAGCGCGCGATGTCCTGAACGCTGGCCAATGCTGCAAACGTTGGTACAAACTGTCCAAAGATGATTACATCTGGCGAAAGTACTTCCGCCAGGAGTTTAACGTAGACCCATCGATCCAGCTGAAACGAGGTGCGGAAAGCTGGCGGGCCGAGTACCGACGCTTGACCAACAATGTGCCGATGGTAATGACGGATG] consensusID : consensus_3010#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence [GAATCGCCCGAGGNGTTTACCGTACTTCGCATAGAAAGAGAGAAGCGGAGAGAAAAGAAAGGAAACCAGACAGAAAAACGATAGTGAAAGTGCACGGCGCAACTTCCTCCACCGTGTGTGAAAAGCTGCAGCGGGGGCGTACTCACAATCAACTACGAAAGCCATGGCGGAAATCGGCGATGATGTGCCGTTGGCCGATAGGATCCGCGGCAAGACCGTGCATCAGCGCGGTGCTCGCGAAAGTGTGGAGTCCAACAGCTCGACAAGCTCCGGCAGCAGCGAGCAGGACGGAGAGGACGGAGGAACGTACATGGACAACAGCCCGTGGGTGTTTATGCCCGAGCCGCTGTTTATAAAAATATTTCTTCAACTTCGAGCGCGCGATGTCCTGAACGCTGGCCAATGCTGCAAACGTTGGTACAAACTGTCCAAAGATGATTACATCTGGCGAAAGTACTTCCGCCAGGAGTTTAACGTAGACCCATCGATCCAGCTGAAACGAGGAGCGGAAAGCTGGCGGGCCGAGT] [+] EMBL AL932549 [GAATCGCCCGAGGNGTTTACCGTACTTCGCATAGAAAGAGAGAAGCGGAGAGAAAAGAAAGGAAACCAGACAGAAAAACGATAGTGAAAGTGCACGGCGCAACTTCCTCCACCGTGTGTGAAAAGCTGCAGCGGGGGCGTACTCACAATCAACTACGAAAGCCATGGCGGAAATCGGCGATGATGTGCCGTTGGCCGATAGGATCCGCGGCAAGACCGTGCATCAGCGCGGTGCTCGCGAAAGTGTGGAGTCCAACAGCTCGACAAGCTCCGGCAGCAGCGAGCAGGACGGAGAGGACGGAGGAACGTACATGGACAACAGCCCGTGGGTGTTTATGCCCGAGCCGCTGTTTATAAAAATATTTCTTCAACTTCGAGCGCGCGATGTCCTGAACGCTGGCCAATGCTGCAAACGTTGGTACAAACTGTCCAAAGATGATTACATCTGGCGAAAGTACTTCCGCCAGGAGTTTAACGTAGACCCATCGATCCAGCTGAAACGAGGAGCGGAAAGCTGGCGGGCCGAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3010#0 TTTTTTCGCTGCTCTGTCGTGCGAATGGTACATTTTCGGAAGGAAGTGAATATATTTCGT 60 consensus_3010#1 ------------------------------------------------------------ consensus_3010#0 CAAGTGGTGATTCGTACATAAATATATATATCCTTTCGTGCTACCCAGCGCAGAAACTGT 120 consensus_3010#1 ------------------------------------------------------------ consensus_3010#0 TTAGCGCTGAGTTTCATTGCCATTTGTTCAAATCAATTGTATCATGCGTACGCTTCGTTT 180 consensus_3010#1 ------------------------------------------GAATCGCCCGAGGNGTTT 18 * ** ** **** consensus_3010#0 ACCGTACTTCGCATAGAAAGAGAGAAGCGGAGAGAAAAGAAAGGAAACCAGACAGAAAAA 240 consensus_3010#1 ACCGTACTTCGCATAGAAAGAGAGAAGCGGAGAGAAAAGAAAGGAAACCAGACAGAAAAA 78 ************************************************************ consensus_3010#0 CGTATAGTGAAAGCTGCACGGCGCAACTTCCTCCACCGTGTGTGAAAAGCTGCAGCGGGG 300 consensus_3010#1 CG-ATAGTGAAAG-TGCACGGCGCAACTTCCTCCACCGTGTGTGAAAAGCTGCAGCGGGG 136 ** ********** ********************************************** consensus_3010#0 GCGTACTCACAATCAACTACGAAAGCCATGGCGGAAATCGGCGATGATGTGCCGTTGGCC 360 consensus_3010#1 GCGTACTCACAATCAACTACGAAAGCCATGGCGGAAATCGGCGATGATGTGCCGTTGGCC 196 ************************************************************ consensus_3010#0 GATAGGATCCGCGGCAAGACCGTGCATCAGCGCGGTGCTCCCGAAAGTGTGGAGTCCAAC 420 consensus_3010#1 GATAGGATCCGCGGCAAGACCGTGCATCAGCGCGGTGCTCGCGAAAGTGTGGAGTCCAAC 256 **************************************** ******************* consensus_3010#0 AGCTCGACAAGCTCCGGCAGCAGCGAGCAGGACGGAGAGGACGGAGGAACGTACATGGAC 480 consensus_3010#1 AGCTCGACAAGCTCCGGCAGCAGCGAGCAGGACGGAGAGGACGGAGGAACGTACATGGAC 316 ************************************************************ consensus_3010#0 AACAGCCCGTGGGTGTTTATGCCCGAGCCGCTGTTTATAAAAATCTTTCTTCAACTTCGA 540 consensus_3010#1 AACAGCCCGTGGGTGTTTATGCCCGAGCCGCTGTTTATAAAAATATTTCTTCAACTTCGA 376 ******************************************** *************** consensus_3010#0 GCGCGCGATGTCCTGAACGCTGGCCAATGCTGCAAACGTTGGTACAAACTGTCCAAAGAT 600 consensus_3010#1 GCGCGCGATGTCCTGAACGCTGGCCAATGCTGCAAACGTTGGTACAAACTGTCCAAAGAT 436 ************************************************************ consensus_3010#0 GATTACATCTGGCGAAAGTACTTCCGCCAGGAGTTTAACGTAGACCCATCGATCCAGCTG 660 consensus_3010#1 GATTACATCTGGCGAAAGTACTTCCGCCAGGAGTTTAACGTAGACCCATCGATCCAGCTG 496 ************************************************************ consensus_3010#0 AAACGAGGTGCGGAAAGCTGGCGGGCCGAGTACCGACGCTTGACCAACAATGTGCCGATG 720 consensus_3010#1 AAACGAGGAGCGGAAAGCTGGCGGGCCGAGT----------------------------- 527 ******** ********************** consensus_3010#0 GTAATGACGGATG 733 consensus_3010#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||