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Anopheles gambiae
cluster # 3010 cluster # 3010       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3010#0 length = 733 sequences # 1  
consensus_3010#1 length = 527 sequences # 1  

consensusID : consensus_3010#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 733
fasta sequence
                              [TTTTTTCGCTGCTCTGTCGTGCGAATGGTACATTTTCGGAAGGAAGTGAATATATTTCGTCAAGTGGTGATTCGTACATAAATATATATATCCTTTCGTGCTACCCAGCGCAGAAACTGTTTAGCGCTGAGTTTCATTGCCATTTGTTCAAATCAATTGTATCATGCGTACGCTTCGTTTACCGTACTTCGCATAGAAAGAGAGAAGCGGAGAGAAAAGAAAGGAAACCAGACAGAAAAACGTATAGTGAAAGCTGCACGGCGCAACTTCCTCCACCGTGTGTGAAAAGCTGCAGCGGGGGCGTACTCACAATCAACTACGAAAGCCATGGCGGAAATCGGCGATGATGTGCCGTTGGCCGATAGGATCCGCGGCAAGACCGTGCATCAGCGCGGTGCTCCCGAAAGTGTGGAGTCCAACAGCTCGACAAGCTCCGGCAGCAGCGAGCAGGACGGAGAGGACGGAGGAACGTACATGGACAACAGCCCGTGGGTGTTTATGCCCGAGCCGCTGTTTATAAAAATCTTTCTTCAACTTCGAGCGCGCGATGTCCTGAACGCTGGCCAATGCTGCAAACGTTGGTACAAACTGTCCAAAGATGATTACATCTGGCGAAAGTACTTCCGCCAGGAGTTTAACGTAGACCCATCGATCCAGCTGAAACGAGGTGCGGAAAGCTGGCGGGCCGAGTACCGACGCTTGACCAACAATGTGCCGATGGTAATGACGGATG]

[+] EMBL CNS09QZP             [TTTTTTCGCTGCTCTGTCGTGCGAATGGTACATTTTCGGAAGGAAGTGAATATATTTCGTCAAGTGGTGATTCGTACATAAATATATATATCCTTTCGTGCTACCCAGCGCAGAAACTGTTTAGCGCTGAGTTTCATTGCCATTTGTTCAAATCAATTGTATCATGCGTACGCTTCGTTTACCGTACTTCGCATAGAAAGAGAGAAGCGGAGAGAAAAGAAAGGAAACCAGACAGAAAAACGTATAGTGAAAGCTGCACGGCGCAACTTCCTCCACCGTGTGTGAAAAGCTGCAGCGGGGGCGTACTCACAATCAACTACGAAAGCCATGGCGGAAATCGGCGATGATGTGCCGTTGGCCGATAGGATCCGCGGCAAGACCGTGCATCAGCGCGGTGCTCCCGAAAGTGTGGAGTCCAACAGCTCGACAAGCTCCGGCAGCAGCGAGCAGGACGGAGAGGACGGAGGAACGTACATGGACAACAGCCCGTGGGTGTTTATGCCCGAGCCGCTGTTTATAAAAATCTTTCTTCAACTTCGAGCGCGCGATGTCCTGAACGCTGGCCAATGCTGCAAACGTTGGTACAAACTGTCCAAAGATGATTACATCTGGCGAAAGTACTTCCGCCAGGAGTTTAACGTAGACCCATCGATCCAGCTGAAACGAGGTGCGGAAAGCTGGCGGGCCGAGTACCGACGCTTGACCAACAATGTGCCGATGGTAATGACGGATG]


>consensus_3010#0 TTTTTTCGCTGCTCTGTCGTGCGAATGGTACATTTTCGGAAGGAAGTGAATATATTTCGT CAAGTGGTGATTCGTACATAAATATATATATCCTTTCGTGCTACCCAGCGCAGAAACTGT TTAGCGCTGAGTTTCATTGCCATTTGTTCAAATCAATTGTATCATGCGTACGCTTCGTTT ACCGTACTTCGCATAGAAAGAGAGAAGCGGAGAGAAAAGAAAGGAAACCAGACAGAAAAA CGTATAGTGAAAGCTGCACGGCGCAACTTCCTCCACCGTGTGTGAAAAGCTGCAGCGGGG GCGTACTCACAATCAACTACGAAAGCCATGGCGGAAATCGGCGATGATGTGCCGTTGGCC GATAGGATCCGCGGCAAGACCGTGCATCAGCGCGGTGCTCCCGAAAGTGTGGAGTCCAAC AGCTCGACAAGCTCCGGCAGCAGCGAGCAGGACGGAGAGGACGGAGGAACGTACATGGAC AACAGCCCGTGGGTGTTTATGCCCGAGCCGCTGTTTATAAAAATCTTTCTTCAACTTCGA GCGCGCGATGTCCTGAACGCTGGCCAATGCTGCAAACGTTGGTACAAACTGTCCAAAGAT GATTACATCTGGCGAAAGTACTTCCGCCAGGAGTTTAACGTAGACCCATCGATCCAGCTG AAACGAGGTGCGGAAAGCTGGCGGGCCGAGTACCGACGCTTGACCAACAATGTGCCGATG GTAATGACGGATG



consensusID : consensus_3010#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 527
fasta sequence
                              [GAATCGCCCGAGGNGTTTACCGTACTTCGCATAGAAAGAGAGAAGCGGAGAGAAAAGAAAGGAAACCAGACAGAAAAACGATAGTGAAAGTGCACGGCGCAACTTCCTCCACCGTGTGTGAAAAGCTGCAGCGGGGGCGTACTCACAATCAACTACGAAAGCCATGGCGGAAATCGGCGATGATGTGCCGTTGGCCGATAGGATCCGCGGCAAGACCGTGCATCAGCGCGGTGCTCGCGAAAGTGTGGAGTCCAACAGCTCGACAAGCTCCGGCAGCAGCGAGCAGGACGGAGAGGACGGAGGAACGTACATGGACAACAGCCCGTGGGTGTTTATGCCCGAGCCGCTGTTTATAAAAATATTTCTTCAACTTCGAGCGCGCGATGTCCTGAACGCTGGCCAATGCTGCAAACGTTGGTACAAACTGTCCAAAGATGATTACATCTGGCGAAAGTACTTCCGCCAGGAGTTTAACGTAGACCCATCGATCCAGCTGAAACGAGGAGCGGAAAGCTGGCGGGCCGAGT]

[+] EMBL AL932549             [GAATCGCCCGAGGNGTTTACCGTACTTCGCATAGAAAGAGAGAAGCGGAGAGAAAAGAAAGGAAACCAGACAGAAAAACGATAGTGAAAGTGCACGGCGCAACTTCCTCCACCGTGTGTGAAAAGCTGCAGCGGGGGCGTACTCACAATCAACTACGAAAGCCATGGCGGAAATCGGCGATGATGTGCCGTTGGCCGATAGGATCCGCGGCAAGACCGTGCATCAGCGCGGTGCTCGCGAAAGTGTGGAGTCCAACAGCTCGACAAGCTCCGGCAGCAGCGAGCAGGACGGAGAGGACGGAGGAACGTACATGGACAACAGCCCGTGGGTGTTTATGCCCGAGCCGCTGTTTATAAAAATATTTCTTCAACTTCGAGCGCGCGATGTCCTGAACGCTGGCCAATGCTGCAAACGTTGGTACAAACTGTCCAAAGATGATTACATCTGGCGAAAGTACTTCCGCCAGGAGTTTAACGTAGACCCATCGATCCAGCTGAAACGAGGAGCGGAAAGCTGGCGGGCCGAGT]


>consensus_3010#1 GAATCGCCCGAGGNGTTTACCGTACTTCGCATAGAAAGAGAGAAGCGGAGAGAAAAGAAA GGAAACCAGACAGAAAAACGATAGTGAAAGTGCACGGCGCAACTTCCTCCACCGTGTGTG AAAAGCTGCAGCGGGGGCGTACTCACAATCAACTACGAAAGCCATGGCGGAAATCGGCGA TGATGTGCCGTTGGCCGATAGGATCCGCGGCAAGACCGTGCATCAGCGCGGTGCTCGCGA AAGTGTGGAGTCCAACAGCTCGACAAGCTCCGGCAGCAGCGAGCAGGACGGAGAGGACGG AGGAACGTACATGGACAACAGCCCGTGGGTGTTTATGCCCGAGCCGCTGTTTATAAAAAT ATTTCTTCAACTTCGAGCGCGCGATGTCCTGAACGCTGGCCAATGCTGCAAACGTTGGTA CAAACTGTCCAAAGATGATTACATCTGGCGAAAGTACTTCCGCCAGGAGTTTAACGTAGA CCCATCGATCCAGCTGAAACGAGGAGCGGAAAGCTGGCGGGCCGAGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3010#0      TTTTTTCGCTGCTCTGTCGTGCGAATGGTACATTTTCGGAAGGAAGTGAATATATTTCGT 60
consensus_3010#1      ------------------------------------------------------------
                                                                                  

consensus_3010#0      CAAGTGGTGATTCGTACATAAATATATATATCCTTTCGTGCTACCCAGCGCAGAAACTGT 120
consensus_3010#1      ------------------------------------------------------------
                                                                                  

consensus_3010#0      TTAGCGCTGAGTTTCATTGCCATTTGTTCAAATCAATTGTATCATGCGTACGCTTCGTTT 180
consensus_3010#1      ------------------------------------------GAATCGCCCGAGGNGTTT 18
                                                                 *  **  **    ****

consensus_3010#0      ACCGTACTTCGCATAGAAAGAGAGAAGCGGAGAGAAAAGAAAGGAAACCAGACAGAAAAA 240
consensus_3010#1      ACCGTACTTCGCATAGAAAGAGAGAAGCGGAGAGAAAAGAAAGGAAACCAGACAGAAAAA 78
                      ************************************************************

consensus_3010#0      CGTATAGTGAAAGCTGCACGGCGCAACTTCCTCCACCGTGTGTGAAAAGCTGCAGCGGGG 300
consensus_3010#1      CG-ATAGTGAAAG-TGCACGGCGCAACTTCCTCCACCGTGTGTGAAAAGCTGCAGCGGGG 136
                      ** ********** **********************************************

consensus_3010#0      GCGTACTCACAATCAACTACGAAAGCCATGGCGGAAATCGGCGATGATGTGCCGTTGGCC 360
consensus_3010#1      GCGTACTCACAATCAACTACGAAAGCCATGGCGGAAATCGGCGATGATGTGCCGTTGGCC 196
                      ************************************************************

consensus_3010#0      GATAGGATCCGCGGCAAGACCGTGCATCAGCGCGGTGCTCCCGAAAGTGTGGAGTCCAAC 420
consensus_3010#1      GATAGGATCCGCGGCAAGACCGTGCATCAGCGCGGTGCTCGCGAAAGTGTGGAGTCCAAC 256
                      **************************************** *******************

consensus_3010#0      AGCTCGACAAGCTCCGGCAGCAGCGAGCAGGACGGAGAGGACGGAGGAACGTACATGGAC 480
consensus_3010#1      AGCTCGACAAGCTCCGGCAGCAGCGAGCAGGACGGAGAGGACGGAGGAACGTACATGGAC 316
                      ************************************************************

consensus_3010#0      AACAGCCCGTGGGTGTTTATGCCCGAGCCGCTGTTTATAAAAATCTTTCTTCAACTTCGA 540
consensus_3010#1      AACAGCCCGTGGGTGTTTATGCCCGAGCCGCTGTTTATAAAAATATTTCTTCAACTTCGA 376
                      ******************************************** ***************

consensus_3010#0      GCGCGCGATGTCCTGAACGCTGGCCAATGCTGCAAACGTTGGTACAAACTGTCCAAAGAT 600
consensus_3010#1      GCGCGCGATGTCCTGAACGCTGGCCAATGCTGCAAACGTTGGTACAAACTGTCCAAAGAT 436
                      ************************************************************

consensus_3010#0      GATTACATCTGGCGAAAGTACTTCCGCCAGGAGTTTAACGTAGACCCATCGATCCAGCTG 660
consensus_3010#1      GATTACATCTGGCGAAAGTACTTCCGCCAGGAGTTTAACGTAGACCCATCGATCCAGCTG 496
                      ************************************************************

consensus_3010#0      AAACGAGGTGCGGAAAGCTGGCGGGCCGAGTACCGACGCTTGACCAACAATGTGCCGATG 720
consensus_3010#1      AAACGAGGAGCGGAAAGCTGGCGGGCCGAGT----------------------------- 527
                      ******** **********************                             

consensus_3010#0      GTAATGACGGATG 733
consensus_3010#1      -------------
                                   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)