These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3020#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence [CCGCGGACGCGTGGGACACAGTGGTAAAGCGCATGTCTCGTGTATAGAGAGTAAAGCAGCGTTAAAGAGCGTTGCTTCATTTAGTAACATTAGTAGCAGTAGTAGTAGTAGTAGTAGTTTAATGGAAAGAGGTATAGCAAAACTATATTATTAGATGCATAAACACACACACACATACCAGTACCGAGGAGATGGAAAATTACACCCCACTTTTGCAAAATCACTATGAGACGTAGTACGTACAACTCACTCTTCCATTAACTTCAAGTAGTAGTTCGCCCAAACATACTCCAATGGTGCGCGTATAGGCGCCACATGAACCTGTATACTCAACAACAACAACTCACTCAACTCGTAACCACGCACTGATAAACTATGGCACCGTTGGGTAAAGCCTCTTCTCTCAACACACGGCACTTGAAACGCAATAGTACACAGAAACAGAATATACATTCGATAGGAAACGGATGGATTTTGTTGTTGAACAAATACACACCAACATAACAGTATAGAAATAGATATATATCAATGCGATAGAAACCTCATCTGTGGAGAAAGCAAAATGACAGAAACAATAGTAGTAAATGAAATTGAATACACCAATACGAAGGAACTCCTCGTGCTCG] [+] EMBL BM607384 [CCGCGGACGCGTGGGACACAGTGGTAAAGCGCATGTCTCGTGTATAGAGAGTAAAGCAGCGTTAAAGAGCGTTGCTTCATTTAGTAACATTAGTAGCAGTAGTAGTAGTAGTAGTAGTTTAATGGAAAGAGGTATAGCAAAACTATATTATTAGATGCATAAACACACACACACATACCAGTACCGAGGAGATGGAAAATTACACCCCACTTTTGCAAAATCACTATGAGACGTAGTACGTACAACTCACTCTTCCATTAACTTCAAGTAGTAGTTCGCCCAAACATACTCCAATGGTGCGCGTATAGGCGCCACATGAACCTGTATACTCAACAACAACAACTCACTCAACTCGTAACCACGCACTGATAAACTATGGCACCGTTGGGTAAAGCCTCTTCTCTCAACACACGGCACTTGAAACGCAATAGTACACAGAAACAGAATATACATTCGATAGGAAACGGATGGATTTTGTTGTTGAACAAATACACACCAACATAACAGTATAGAAATAGATATATATCAATGCGATAGAAACCTCATCTGTGGAGAAAGCAAAATGACAGAAACAATAGTAGTAAATGAAATTGAATACACCAATACGAAGGAACTCCTCGTGCTCG] consensusID : consensus_3020#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 416 fasta sequence [AGAATCGCCACGAGGTGCATGCCTCGTGTATAGAGAGTGAAGCAGTTAAAGAGGGTTACATCATTTAGTAACATTAGTAGTAGTAGTAGTAGTAGTAGTAGTTTAATGGAAAGAGGTATAGCAAAACTATTATTAGATGCATAAACACACACACACACATACCAGTACCGAGATGGAAAATTACACCCCACTTTTGCAAAATCACTATGAGACGTAGCGTAGTACGTACAACTCACTCTTCCATTAACTTCAAGTAGTAGTTCGCCCAAACATACTCCAATGGTGCGCGTATAGGCGCCACATGAACCTGTATACTCAACAACAACAACAACTCACTCAACTCGTAACCGCGCGCACTGATAAACTATGGCACCGTTGGGTAAAGCCTCTTCTCTCAACACACGGCACTTGAAACG] [+] EMBL AL932551 [AGAATCGCCACGAGGTGCATGCCTCGTGTATAGAGAGTGAAGCAGTTAAAGAGGGTTACATCATTTAGTAACATTAGTAGTAGTAGTAGTAGTAGTAGTAGTTTAATGGAAAGAGGTATAGCAAAACTATTATTAGATGCATAAACACACACACACACATACCAGTACCGAGATGGAAAATTACACCCCACTTTTGCAAAATCACTATGAGACGTAGCGTAGTACGTACAACTCACTCTTCCATTAACTTCAAGTAGTAGTTCGCCCAAACATACTCCAATGGTGCGCGTATAGGCGCCACATGAACCTGTATACTCAACAACAACAACAACTCACTCAACTCGTAACCGCGCGCACTGATAAACTATGGCACCGTTGGGTAAAGCCTCTTCTCTCAACACACGGCACTTGAAACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3020#0 CCGCGGACGCGTGGGACACAGTGGTAAAGCGCATGTCTCGTGTATAGAGAGTAAAGCAGC 60 consensus_3020#1 --------------AGAATCGCCACGAGGTGCATGCCTCGTGTATAGAGAGTGAAGCA-- 44 * * * * ***** **************** ***** consensus_3020#0 GTTAAAGAGCGTTGCTTCATTTAGTAACATTAGTAGCAGTAGTAGTAGTAGTAGTAGTTT 120 consensus_3020#1 GTTAAAGAGGGTTACATCATTTAGTAACATTAGTAGTAGTAGTAGTAGTAGTAGTAGTTT 104 ********* *** * ******************** *********************** consensus_3020#0 AATGGAAAGAGGTATAGCAAAACTATATTATTAGATGCATAAACACACACACACA--TAC 178 consensus_3020#1 AATGGAAAGAGGTATAGCAAAACTAT--TATTAGATGCATAAACACACACACACACATAC 162 ************************** *************************** *** consensus_3020#0 CAGTACCGAGGAGATGGAAAATTACACCCCACTTTTGCAAAATCACTATGAGACGTAG-- 236 consensus_3020#1 CAGTACCGA---GATGGAAAATTACACCCCACTTTTGCAAAATCACTATGAGACGTAGCG 219 ********* ********************************************** consensus_3020#0 ---TACGTACAACTCACTCTTCCATTAACTTCAAGTAGTAGTTCGCCCAAACATACTCCA 293 consensus_3020#1 TAGTACGTACAACTCACTCTTCCATTAACTTCAAGTAGTAGTTCGCCCAAACATACTCCA 279 ********************************************************* consensus_3020#0 ATGGTGCGCGTATAGGCGCCACATGAACCTGTATACTCAACAACAACAAC---TCACTCA 350 consensus_3020#1 ATGGTGCGCGTATAGGCGCCACATGAACCTGTATACTCAACAACAACAACAACTCACTCA 339 ************************************************** ******* consensus_3020#0 ACTCGTAACCACGC--ACTGATAAACTATGGCACCGTTGGGTAAAGCCTCTTCTCTCAAC 408 consensus_3020#1 ACTCGTAACCGCGCGCACTGATAAACTATGGCACCGTTGGGTAAAGCCTCTTCTCTCAAC 399 ********** *** ******************************************** consensus_3020#0 ACACGGCACTTGAAACGCAATAGTACACAGAAACAGAATATACATTCGATAGGAAACGGA 468 consensus_3020#1 ACACGGCACTTGAAACG------------------------------------------- 416 ***************** consensus_3020#0 TGGATTTTGTTGTTGAACAAATACACACCAACATAACAGTATAGAAATAGATATATATCA 528 consensus_3020#1 ------------------------------------------------------------ consensus_3020#0 ATGCGATAGAAACCTCATCTGTGGAGAAAGCAAAATGACAGAAACAATAGTAGTAAATGA 588 consensus_3020#1 ------------------------------------------------------------ consensus_3020#0 AATTGAATACACCAATACGAAGGAACTCCTCGTGCTCG 626 consensus_3020#1 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||