cluster # 3030

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3030 cluster # 3030 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3030#0 length = 900 sequences # 1

consensus_3030#1 length = 522 sequences # 1

consensusID : consensus_3030#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 900
fasta sequence

                              [GAGGCCAGATCGCCACGAGGGTAATTTTAAAATGAAAAAAAACAAACGAGCTAAGCTATTACTACCATACTGCTACACTGAAGTGTTCTCTCTTTAACGCGCGAGAATGAAACGTAAAGTGCACTCTGAACAGAAATCTGAACCGGTAGTTATTAGTTAAGGGGAAACTACCACAAACTATAGCGCTGTAATCTATGTAACACGTAAACGACAACAAGACGAAAAGCTACGCACCGAAAAGAAAAGCATAAAAGACCTATTTTTAGAGATTTATATACAAAAACAAACACGCAAAGATGGATGCATATATATACATTTGAACGATGCAACGAATCGTCGTCAATCTACTACATCGAGCTGCTTTTATGTGCGAACAGACACTTGCAGAAGCTAATGAAGTGAATGATTTATTGGTAGTAGGGTGCATTTTACCTACCACTGCAATGTTGCAATTACATGTATTTTGTACTATCGCTCTCCTTGCCACCGCTTGTCTTTCTTTTGTATAATCATACCCATTTCGTTTGGTAAATGTTGTTGTTAGATTTTTTAAGTTTGGGCTTAAAACTTCTTGCAACGAATGTGTAGCAACAGTTCGGTGCTGTCGGAGTTTACCTAATCAAGTGGGAAAGGGAGAGAAAGGGTCAAAGCAACTCTTTCCGTTTTCGTTCGTAAAATGAACTGAACCGGAACCGGGTGCGTGTGAAAAATTACCCCGGTGAGATTATGCTATAGTTTTGGTTAAAGGAAGGAACACTGGTTTTTGCACCATTGCACTTCTTCCTTCATTCATTACTCGTACNTCACCCTTTGCTTCCTGGCTGGCTTCCCATTCANTCCGGGAAGACGGTTTCACCAGGGTTTCCACAGAAAGTCGAAGNTANAGTGAGATCCCCTTCC]

[+] EMBL BX467633             [GAGGCCAGATCGCCACGAGGGTAATTTTAAAATGAAAAAAAACAAACGAGCTAAGCTATTACTACCATACTGCTACACTGAAGTGTTCTCTCTTTAACGCGCGAGAATGAAACGTAAAGTGCACTCTGAACAGAAATCTGAACCGGTAGTTATTAGTTAAGGGGAAACTACCACAAACTATAGCGCTGTAATCTATGTAACACGTAAACGACAACAAGACGAAAAGCTACGCACCGAAAAGAAAAGCATAAAAGACCTATTTTTAGAGATTTATATACAAAAACAAACACGCAAAGATGGATGCATATATATACATTTGAACGATGCAACGAATCGTCGTCAATCTACTACATCGAGCTGCTTTTATGTGCGAACAGACACTTGCAGAAGCTAATGAAGTGAATGATTTATTGGTAGTAGGGTGCATTTTACCTACCACTGCAATGTTGCAATTACATGTATTTTGTACTATCGCTCTCCTTGCCACCGCTTGTCTTTCTTTTGTATAATCATACCCATTTCGTTTGGTAAATGTTGTTGTTAGATTTTTTAAGTTTGGGCTTAAAACTTCTTGCAACGAATGTGTAGCAACAGTTCGGTGCTGTCGGAGTTTACCTAATCAAGTGGGAAAGGGAGAGAAAGGGTCAAAGCAACTCTTTCCGTTTTCGTTCGTAAAATGAACTGAACCGGAACCGGGTGCGTGTGAAAAATTACCCCGGTGAGATTATGCTATAGTTTTGGTTAAAGGAAGGAACACTGGTTTTTGCACCATTGCACTTCTTCCTTCATTCATTACTCGTACNTCACCCTTTGCTTCCTGGCTGGCTTCCCATTCANTCCGGGAAGACGGTTTCACCAGGGTTTCCACAGAAAGTCGAAGNTANAGTGAGATCCCCTTCC]




>consensus_3030#0
GAGGCCAGATCGCCACGAGGGTAATTTTAAAATGAAAAAAAACAAACGAGCTAAGCTATT
ACTACCATACTGCTACACTGAAGTGTTCTCTCTTTAACGCGCGAGAATGAAACGTAAAGT
GCACTCTGAACAGAAATCTGAACCGGTAGTTATTAGTTAAGGGGAAACTACCACAAACTA
TAGCGCTGTAATCTATGTAACACGTAAACGACAACAAGACGAAAAGCTACGCACCGAAAA
GAAAAGCATAAAAGACCTATTTTTAGAGATTTATATACAAAAACAAACACGCAAAGATGG
ATGCATATATATACATTTGAACGATGCAACGAATCGTCGTCAATCTACTACATCGAGCTG
CTTTTATGTGCGAACAGACACTTGCAGAAGCTAATGAAGTGAATGATTTATTGGTAGTAG
GGTGCATTTTACCTACCACTGCAATGTTGCAATTACATGTATTTTGTACTATCGCTCTCC
TTGCCACCGCTTGTCTTTCTTTTGTATAATCATACCCATTTCGTTTGGTAAATGTTGTTG
TTAGATTTTTTAAGTTTGGGCTTAAAACTTCTTGCAACGAATGTGTAGCAACAGTTCGGT
GCTGTCGGAGTTTACCTAATCAAGTGGGAAAGGGAGAGAAAGGGTCAAAGCAACTCTTTC
CGTTTTCGTTCGTAAAATGAACTGAACCGGAACCGGGTGCGTGTGAAAAATTACCCCGGT
GAGATTATGCTATAGTTTTGGTTAAAGGAAGGAACACTGGTTTTTGCACCATTGCACTTC
TTCCTTCATTCATTACTCGTACNTCACCCTTTGCTTCCTGGCTGGCTTCCCATTCANTCC
GGGAAGACGGTTTCACCAGGGTTTCCACAGAAAGTCGAAGNTANAGTGAGATCCCCTTCC

consensusID : consensus_3030#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 522
fasta sequence

                              [CCCCGAGGTTATCTGTAAAAGAATACACCTTCTCTTATATTATAGTACTTTATAGCTTGCTTACCACTTTCATTCACACAATGTTTCATTTCTTGTCCATTGCGAGAGCAAAAAAATTCATTTAAATTGAATGCGCTGTCTCGCAACACCAGGCGCCTCCACGCTGTTGGAAGCAATGTCCAAAAAAACAAAGCAAAAATGTACTAATATGGAATAGCACTTAACTATGTACATAACCGGTATAGAAGATATTCCCTTTATTCTGGTGCAACATCAGAAGCAGCAAAATCAGTGTTAAAGTAAATTTTAAAATGAAAAAAAAAAACGAGCTAAGCTATTACTACCATACTGCTACACTGAAGTGTTCTCTCTTTAACGCGCGAGAATGAAACGTAAAGTGCACTCTGAACAGAAATCTGAACCGGTAGTTATTAGTTAAGGGGAAACTACCACAAACTATAGCGCTGTAATCTATGTAACACGTAAACGACAACAAGACGAAAAGCTACGCACCGAAACAGA]

[+] EMBL AL932258             [CCCCGAGGTTATCTGTAAAAGAATACACCTTCTCTTATATTATAGTACTTTATAGCTTGCTTACCACTTTCATTCACACAATGTTTCATTTCTTGTCCATTGCGAGAGCAAAAAAATTCATTTAAATTGAATGCGCTGTCTCGCAACACCAGGCGCCTCCACGCTGTTGGAAGCAATGTCCAAAAAAACAAAGCAAAAATGTACTAATATGGAATAGCACTTAACTATGTACATAACCGGTATAGAAGATATTCCCTTTATTCTGGTGCAACATCAGAAGCAGCAAAATCAGTGTTAAAGTAAATTTTAAAATGAAAAAAAAAAACGAGCTAAGCTATTACTACCATACTGCTACACTGAAGTGTTCTCTCTTTAACGCGCGAGAATGAAACGTAAAGTGCACTCTGAACAGAAATCTGAACCGGTAGTTATTAGTTAAGGGGAAACTACCACAAACTATAGCGCTGTAATCTATGTAACACGTAAACGACAACAAGACGAAAAGCTACGCACCGAAACAGA]




>consensus_3030#1
CCCCGAGGTTATCTGTAAAAGAATACACCTTCTCTTATATTATAGTACTTTATAGCTTGC
TTACCACTTTCATTCACACAATGTTTCATTTCTTGTCCATTGCGAGAGCAAAAAAATTCA
TTTAAATTGAATGCGCTGTCTCGCAACACCAGGCGCCTCCACGCTGTTGGAAGCAATGTC
CAAAAAAACAAAGCAAAAATGTACTAATATGGAATAGCACTTAACTATGTACATAACCGG
TATAGAAGATATTCCCTTTATTCTGGTGCAACATCAGAAGCAGCAAAATCAGTGTTAAAG
TAAATTTTAAAATGAAAAAAAAAAACGAGCTAAGCTATTACTACCATACTGCTACACTGA
AGTGTTCTCTCTTTAACGCGCGAGAATGAAACGTAAAGTGCACTCTGAACAGAAATCTGA
ACCGGTAGTTATTAGTTAAGGGGAAACTACCACAAACTATAGCGCTGTAATCTATGTAAC
ACGTAAACGACAACAAGACGAAAAGCTACGCACCGAAACAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3030#0      ----GAGGCCAGATCGCCACGAGGGTAATTT-TAAAATGAAAAAAAACAAACGAGCTAAG 55
consensus_3030#1      CCCCGAGGTTATCTGTAAAAGAATACACCTTCTCTTATATTATAGTACTTTATAGCTTGC 60
                          ****  *  *    * **    *  ** *   **   * *  **     ****   

consensus_3030#0      CTATTACTACCATACTGCTACACTGAAGTGTTCTCTCTTTAACGCGCGAGAATGAAACGT 115
consensus_3030#1      TTACCACTTTCATTCA--CACAATGTTTCATTTCTTGTCCATTGCG--AGAGCAAAA--- 113
                       **  ***  *** *    *** **     **   * *  *  ***  ***   ***   

consensus_3030#0      AAAGTGCACTCTGAACAGAAATCTGAACCGGTAGTTATTAGTTAAGGGGAAACTACCACA 175
consensus_3030#1      -AAATTCATTTAAATTGAATGCGCTGTCTCGCAAC-ACCAGGCGCCTCCACGCTGTTGGA 171
                       ** * ** *   *    *        *  * *   *  **        *  **     *

consensus_3030#0      AACTATAGCGCTGTAATCTATGTAACACGTAAACGACAACAAGACGAAAAGCTACGCACC 235
consensus_3030#1      AGCAATGTCCAAAAAAACAAAGCAA-AAATGTACTAATATGGAAT-AGCACTTAACTATG 229
                      * * **  *     ** * * * ** *  *  ** *  *    *  *  *  **   *  

consensus_3030#0      GAAAAGAAAAGCATAAAAGACCTATTTTTAGAGATTTATATACAAAAACAAACACGCAAA 295
consensus_3030#1      TACATAACCGGTATAGAAGATATTCCCTT---TATTCTGGTGCAACATCAGAAGCAGCAA 286
                       * *  *   * *** ****  *    **    ***    * *** * ** *  *   **

consensus_3030#0      GATGGATGCATATATATACATTTGAACGATGCAACGAATCGTCGTCAATCTACTACATCG 355
consensus_3030#1      AATCAGTGTTAAAGTAAATTTTAAAATGAAAAAAAAAAACGA-GCTAAGCTATTACTACC 345
                       **   **   *  ** *  **  ** **   **  ** **  *  ** *** ***  * 

consensus_3030#0      AGCTGCTTTTATGTGCGAACAGACACTTGCAGAAGCTAATGAAGTGAATGATTTATTGGT 415
consensus_3030#1      A--TACTGCTACACTGAAGTGTTCTCTCTTTAACGCGCGAGAATGAAACG---------- 393
                      *  * **  **      *     * **     * **    ***   ** *          

consensus_3030#0      AGTAGGGTGCATTTTACCTACCACTGCAATGTTGCAATTACATGT--ATTTTGTACTATC 473
consensus_3030#1      --TAAAGTGCACTCTGAACAGAAATCTGAACCGGTAGTTATTAGTTAAGGGGAAACTACC 451
                        **  ***** * *    *  * *   *    * * ***   **  *      **** *

consensus_3030#0      GCTCTCCTTGCCACCGCTTGTCTTTCTTTTGTATAATC-ATACCCATTTCGTTTGGTAAA 532
consensus_3030#1      ACAAACTATAGCGCTG-TAATCTATGTAACACGTAAACGACAACAAGACGAAAAGCTACG 510
                       *   *  *  * * * *  *** * *      *** * * * * *        * **  

consensus_3030#0      TGTTGTTGTTAGATTTTTTAAGTTTGGGCTTAAAACTTCTTGCAACGAATGTGTAGCAAC 592
consensus_3030#1      CACCGAAAC-AGA----------------------------------------------- 522
                          *     ***                                               

consensus_3030#0      AGTTCGGTGCTGTCGGAGTTTACCTAATCAAGTGGGAAAGGGAGAGAAAGGGTCAAAGCA 652
consensus_3030#1      ------------------------------------------------------------
                                                                                  

consensus_3030#0      ACTCTTTCCGTTTTCGTTCGTAAAATGAACTGAACCGGAACCGGGTGCGTGTGAAAAATT 712
consensus_3030#1      ------------------------------------------------------------
                                                                                  

consensus_3030#0      ACCCCGGTGAGATTATGCTATAGTTTTGGTTAAAGGAAGGAACACTGGTTTTTGCACCAT 772
consensus_3030#1      ------------------------------------------------------------
                                                                                  

consensus_3030#0      TGCACTTCTTCCTTCATTCATTACTCGTACNTCACCCTTTGCTTCCTGGCTGGCTTCCCA 832
consensus_3030#1      ------------------------------------------------------------
                                                                                  

consensus_3030#0      TTCANTCCGGGAAGACGGTTTCACCAGGGTTTCCACAGAAAGTCGAAGNTANAGTGAGAT 892
consensus_3030#1      ------------------------------------------------------------
                                                                                  

consensus_3030#0      CCCCTTCC 900
consensus_3030#1      --------