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Anopheles gambiae
cluster # 3038 cluster # 3038       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3038#0 length = 724 sequences # 1  
consensus_3038#1 length = 608 sequences # 1  

consensusID : consensus_3038#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 724
fasta sequence
                              [CCGGAAGTTTCGCTAGCCTACCTGTACAACGACAACCTGGAGGAGGATCAGGAGGATTGGAAGAGCGTCGAGAGTGACTACAACAACGCCGACGAAGAGTTTGACAGCGATGGCAAGGGGGAGGATGAAGAAGGCGAAGAAGAGGAAGATGGTGAGGATGATGCCGATGGGTCGGAGGCTGCAGCATCGTCGACCGCTGCAGTAGCGGCGGAAGCAGACGAATCAAAGTCCACAGCAACAGAAGCGGCAGCCGCCACATCGTCAACCACAGAAGATGTTGCGAAAGAAGGTGAACCGGAAGCAAGGGGCAAGAAGAGAAAGTTCCAAGGCACGGACAGCGACGGTTAAGCGGCACGCTAAACGCTTCCAAGTCATACACAAAACCTAATACAAATGTGTGGAGGTATAACGGCAACGCGCTGGAGGCTCTTTCGCTCGACGGCGTGTCATTCGTTGCCCTTCCACTCGCAAAGCAAACGTTTATCCCCCAACCAACAACAATTCATGCAATTCGTCATCACTCCGCTACTGTCGTTCGCGCAGTAGTGTAATGGATATGTAACTACAAAGTTTTATCTTCTTTTTTACCATCAAAAGAAAATGTGTAACAACAGCTAGCTATCATAGTTTGATGAAATCCACAACAATATATACATATAGAAGAAGAGCGAATATTTCCCCACAATAGACGCCAACACACACACACACACCATACACGCTCCGA]

[+] EMBL BM593099             [CCGGAAGTTTCGCTAGCCTACCTGTACAACGACAACCTGGAGGAGGATCAGGAGGATTGGAAGAGCGTCGAGAGTGACTACAACAACGCCGACGAAGAGTTTGACAGCGATGGCAAGGGGGAGGATGAAGAAGGCGAAGAAGAGGAAGATGGTGAGGATGATGCCGATGGGTCGGAGGCTGCAGCATCGTCGACCGCTGCAGTAGCGGCGGAAGCAGACGAATCAAAGTCCACAGCAACAGAAGCGGCAGCCGCCACATCGTCAACCACAGAAGATGTTGCGAAAGAAGGTGAACCGGAAGCAAGGGGCAAGAAGAGAAAGTTCCAAGGCACGGACAGCGACGGTTAAGCGGCACGCTAAACGCTTCCAAGTCATACACAAAACCTAATACAAATGTGTGGAGGTATAACGGCAACGCGCTGGAGGCTCTTTCGCTCGACGGCGTGTCATTCGTTGCCCTTCCACTCGCAAAGCAAACGTTTATCCCCCAACCAACAACAATTCATGCAATTCGTCATCACTCCGCTACTGTCGTTCGCGCAGTAGTGTAATGGATATGTAACTACAAAGTTTTATCTTCTTTTTTACCATCAAAAGAAAATGTGTAACAACAGCTAGCTATCATAGTTTGATGAAATCCACAACAATATATACATATAGAAGAAGAGCGAATATTTCCCCACAATAGACGCCAACACACACACACACACCATACACGCTCCGA]


>consensus_3038#0 CCGGAAGTTTCGCTAGCCTACCTGTACAACGACAACCTGGAGGAGGATCAGGAGGATTGG AAGAGCGTCGAGAGTGACTACAACAACGCCGACGAAGAGTTTGACAGCGATGGCAAGGGG GAGGATGAAGAAGGCGAAGAAGAGGAAGATGGTGAGGATGATGCCGATGGGTCGGAGGCT GCAGCATCGTCGACCGCTGCAGTAGCGGCGGAAGCAGACGAATCAAAGTCCACAGCAACA GAAGCGGCAGCCGCCACATCGTCAACCACAGAAGATGTTGCGAAAGAAGGTGAACCGGAA GCAAGGGGCAAGAAGAGAAAGTTCCAAGGCACGGACAGCGACGGTTAAGCGGCACGCTAA ACGCTTCCAAGTCATACACAAAACCTAATACAAATGTGTGGAGGTATAACGGCAACGCGC TGGAGGCTCTTTCGCTCGACGGCGTGTCATTCGTTGCCCTTCCACTCGCAAAGCAAACGT TTATCCCCCAACCAACAACAATTCATGCAATTCGTCATCACTCCGCTACTGTCGTTCGCG CAGTAGTGTAATGGATATGTAACTACAAAGTTTTATCTTCTTTTTTACCATCAAAAGAAA ATGTGTAACAACAGCTAGCTATCATAGTTTGATGAAATCCACAACAATATATACATATAG AAGAAGAGCGAATATTTCCCCACAATAGACGCCAACACACACACACACACCATACACGCT CCGA



consensusID : consensus_3038#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 608
fasta sequence
                              [CCGGAGGATTGGAAGAGCGTCGAGAGTGACTACAACAACGCTGACGAAGAGTTTGACAGTGAGGAGGAAGAGGATGAAGAAGGTGGCGGCGGCGGTGGTGGTGGTGGCGAGAATGAGGGTGAAGATGGTGGAGACAGCGATGGCAAGGGGGAGGATGAAGAAGGCGAAGAAGAGGAAGATGGTGAGGATGATGCCGATGGGTCGGAGGCTGCAGCATCGTCGACCGCTGCAGTAGCGGCGGAAGCAGACGAATCAAAGTCCACAGCAACAGAAGCGGCAGCCGCCACATCGTCAACCACAGAAGATGTTGCGAAAGAAGGTGAACCGGAAGCAAGGGGCAAGAAGAGAAAGTTCCAAGGCACGGACAGCGACGGTTAAGCGGCACGCTAAACGCTTCCAAGTCATACACAAAACCTAATACAAATTGTGTGGAGGTGTAACGGCAACGCGCTGGAGGCTCTTTCGCTCGACGGCGTGTCATTCGTTGCCCTTCCACACGCAAAGCAAACGTTTATCCCCCAACCAACAACAATTCATGCAATTCGTCATCACTCCGCTACTGTCGTTCGCGCAGTAGTGTAATGGATATGTAACTACAAAGTTTTATC]

[+] EMBL BM620815             [CCGGAGGATTGGAAGAGCGTCGAGAGTGACTACAACAACGCTGACGAAGAGTTTGACAGTGAGGAGGAAGAGGATGAAGAAGGTGGCGGCGGCGGTGGTGGTGGTGGCGAGAATGAGGGTGAAGATGGTGGAGACAGCGATGGCAAGGGGGAGGATGAAGAAGGCGAAGAAGAGGAAGATGGTGAGGATGATGCCGATGGGTCGGAGGCTGCAGCATCGTCGACCGCTGCAGTAGCGGCGGAAGCAGACGAATCAAAGTCCACAGCAACAGAAGCGGCAGCCGCCACATCGTCAACCACAGAAGATGTTGCGAAAGAAGGTGAACCGGAAGCAAGGGGCAAGAAGAGAAAGTTCCAAGGCACGGACAGCGACGGTTAAGCGGCACGCTAAACGCTTCCAAGTCATACACAAAACCTAATACAAATTGTGTGGAGGTGTAACGGCAACGCGCTGGAGGCTCTTTCGCTCGACGGCGTGTCATTCGTTGCCCTTCCACACGCAAAGCAAACGTTTATCCCCCAACCAACAACAATTCATGCAATTCGTCATCACTCCGCTACTGTCGTTCGCGCAGTAGTGTAATGGATATGTAACTACAAAGTTTTATC]


>consensus_3038#1 CCGGAGGATTGGAAGAGCGTCGAGAGTGACTACAACAACGCTGACGAAGAGTTTGACAGT GAGGAGGAAGAGGATGAAGAAGGTGGCGGCGGCGGTGGTGGTGGTGGCGAGAATGAGGGT GAAGATGGTGGAGACAGCGATGGCAAGGGGGAGGATGAAGAAGGCGAAGAAGAGGAAGAT GGTGAGGATGATGCCGATGGGTCGGAGGCTGCAGCATCGTCGACCGCTGCAGTAGCGGCG GAAGCAGACGAATCAAAGTCCACAGCAACAGAAGCGGCAGCCGCCACATCGTCAACCACA GAAGATGTTGCGAAAGAAGGTGAACCGGAAGCAAGGGGCAAGAAGAGAAAGTTCCAAGGC ACGGACAGCGACGGTTAAGCGGCACGCTAAACGCTTCCAAGTCATACACAAAACCTAATA CAAATTGTGTGGAGGTGTAACGGCAACGCGCTGGAGGCTCTTTCGCTCGACGGCGTGTCA TTCGTTGCCCTTCCACACGCAAAGCAAACGTTTATCCCCCAACCAACAACAATTCATGCA ATTCGTCATCACTCCGCTACTGTCGTTCGCGCAGTAGTGTAATGGATATGTAACTACAAA GTTTTATC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3038#0      ----------------------------CCGGAAGTTTCGCTAGCCTACCTGTACAACGA 32
consensus_3038#1      CCGGAGGATTGGAAGAGCGTCGAGAGTGACTACAACAACGCTGACGAAGA-GTTTGACAG 59
                                                   *   *    ****  *  *   **   **  

consensus_3038#0      CAACCTGGAGGAGGATCAGGAGGATTGGAAGAGCGTCGAGAGTGACTACAACAACGCCGA 92
consensus_3038#1      TGAGGAGGAAGAGGATGAAGAAGGTGGCGGCGGCGGTGGTGGTGGTGGCGAGAATGAGGG 119
                        *   *** ****** * ** * * *     ***  *   ***    * * ** *  * 

consensus_3038#0      CGAAGAGTTTG---ACAGCGATGGCAAGGGGGAGGATGAAGAAGGCGAAGAAGAGGAAGA 149
consensus_3038#1      TGAAGATGGTGGAGACAGCGATGGCAAGGGGGAGGATGAAGAAGGCGAAGAAGAGGAAGA 179
                       *****   **   **********************************************

consensus_3038#0      TGGTGAGGATGATGCCGATGGGTCGGAGGCTGCAGCATCGTCGACCGCTGCAGTAGCGGC 209
consensus_3038#1      TGGTGAGGATGATGCCGATGGGTCGGAGGCTGCAGCATCGTCGACCGCTGCAGTAGCGGC 239
                      ************************************************************

consensus_3038#0      GGAAGCAGACGAATCAAAGTCCACAGCAACAGAAGCGGCAGCCGCCACATCGTCAACCAC 269
consensus_3038#1      GGAAGCAGACGAATCAAAGTCCACAGCAACAGAAGCGGCAGCCGCCACATCGTCAACCAC 299
                      ************************************************************

consensus_3038#0      AGAAGATGTTGCGAAAGAAGGTGAACCGGAAGCAAGGGGCAAGAAGAGAAAGTTCCAAGG 329
consensus_3038#1      AGAAGATGTTGCGAAAGAAGGTGAACCGGAAGCAAGGGGCAAGAAGAGAAAGTTCCAAGG 359
                      ************************************************************

consensus_3038#0      CACGGACAGCGACGGTTAAGCGGCACGCTAAACGCTTCCAAGTCATACACAAAACCTAAT 389
consensus_3038#1      CACGGACAGCGACGGTTAAGCGGCACGCTAAACGCTTCCAAGTCATACACAAAACCTAAT 419
                      ************************************************************

consensus_3038#0      ACAAAT-GTGTGGAGGTATAACGGCAACGCGCTGGAGGCTCTTTCGCTCGACGGCGTGTC 448
consensus_3038#1      ACAAATTGTGTGGAGGTGTAACGGCAACGCGCTGGAGGCTCTTTCGCTCGACGGCGTGTC 479
                      ****** ********** ******************************************

consensus_3038#0      ATTCGTTGCCCTTCCACTCGCAAAGCAAACGTTTATCCCCCAACCAACAACAATTCATGC 508
consensus_3038#1      ATTCGTTGCCCTTCCACACGCAAAGCAAACGTTTATCCCCCAACCAACAACAATTCATGC 539
                      ***************** ******************************************

consensus_3038#0      AATTCGTCATCACTCCGCTACTGTCGTTCGCGCAGTAGTGTAATGGATATGTAACTACAA 568
consensus_3038#1      AATTCGTCATCACTCCGCTACTGTCGTTCGCGCAGTAGTGTAATGGATATGTAACTACAA 599
                      ************************************************************

consensus_3038#0      AGTTTTATCTTCTTTTTTACCATCAAAAGAAAATGTGTAACAACAGCTAGCTATCATAGT 628
consensus_3038#1      AGTTTTATC--------------------------------------------------- 608
                      *********                                                   

consensus_3038#0      TTGATGAAATCCACAACAATATATACATATAGAAGAAGAGCGAATATTTCCCCACAATAG 688
consensus_3038#1      ------------------------------------------------------------
                                                                                  

consensus_3038#0      ACGCCAACACACACACACACACCATACACGCTCCGA 724
consensus_3038#1      ------------------------------------
                                                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)