cluster # 3041

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Anopheles gambiae
cluster # 3041 cluster # 3041 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3041#0 length = 418 sequences # 1

consensus_3041#1 length = 335 sequences # 1

consensusID : consensus_3041#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 418
fasta sequence

                              [AATCGCCCGAGGTGATTTCCAGTTAGAGTCCAATTTTCAACATAATAAGTTCACTTCTCACAAGAAAGAGTCAAGCGTCAAGTGTCCCACAACTATGAGAACCCCTGGAAAACCCTGTACTTACTGCTGGATGCTTCTGTACATACCAATCCCGCTAACACAAACAAACAAAACAGAAACCCATTGCCTTGCACCTTTGCTAACGCTTTTAAACATTTCCAGTCGAGTTTTGCTCTTTTACGCATGCCAGGGAATATACAAATCATTTGCCTACTATACCTTTCTTTTAGTNTGTTTTGCCAAAGCGCTACAGCTTTTTCCGCAAAGTTGCTTAGTTCCGTTTGGAGTATGAAGAAAGGAGTTTGCGCAAAAAAAACATTGTTGCCGAAAAGAACCACCCAGTAAATAGGAATTGAAA]

[+] EMBL AL932565             [AATCGCCCGAGGTGATTTCCAGTTAGAGTCCAATTTTCAACATAATAAGTTCACTTCTCACAAGAAAGAGTCAAGCGTCAAGTGTCCCACAACTATGAGAACCCCTGGAAAACCCTGTACTTACTGCTGGATGCTTCTGTACATACCAATCCCGCTAACACAAACAAACAAAACAGAAACCCATTGCCTTGCACCTTTGCTAACGCTTTTAAACATTTCCAGTCGAGTTTTGCTCTTTTACGCATGCCAGGGAATATACAAATCATTTGCCTACTATACCTTTCTTTTAGTNTGTTTTGCCAAAGCGCTACAGCTTTTTCCGCAAAGTTGCTTAGTTCCGTTTGGAGTATGAAGAAAGGAGTTTGCGCAAAAAAAACATTGTTGCCGAAAAGAACCACCCAGTAAATAGGAATTGAAA]




>consensus_3041#0
AATCGCCCGAGGTGATTTCCAGTTAGAGTCCAATTTTCAACATAATAAGTTCACTTCTCA
CAAGAAAGAGTCAAGCGTCAAGTGTCCCACAACTATGAGAACCCCTGGAAAACCCTGTAC
TTACTGCTGGATGCTTCTGTACATACCAATCCCGCTAACACAAACAAACAAAACAGAAAC
CCATTGCCTTGCACCTTTGCTAACGCTTTTAAACATTTCCAGTCGAGTTTTGCTCTTTTA
CGCATGCCAGGGAATATACAAATCATTTGCCTACTATACCTTTCTTTTAGTNTGTTTTGC
CAAAGCGCTACAGCTTTTTCCGCAAAGTTGCTTAGTTCCGTTTGGAGTATGAAGAAAGGA
GTTTGCGCAAAAAAAACATTGTTGCCGAAAAGAACCACCCAGTAAATAGGAATTGAAA

consensusID : consensus_3041#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 335
fasta sequence

                              [GGCAGAATCGGCACGAGGNAGCAGCTACAGCTTTTTCCGCAAAGTTGCTTAGTTCCCGTTTGGAGTATGAAGAAAGGAGTTTGCGCAAAAAAAACATTGTTGCCGAAAAGAACCACCCAGTAAGATAGGAATTGAAAAACAGAGGAGAGCTTTTGTTTCTATGTATAGAACGAAGCAAAACTAACTCACGCTTGCACAGGAAAACGAAAAACAATGAGACAANAACATGGTACAAAANANAAGCTTAGCCGCAGGCGTAGGGAACGATGCAGTGAAACAAATCCTACTANACTCCGGATACAATATGGAGAACAATATTTTNTGTATACACGTGT]

[+] EMBL BX469405             [GGCAGAATCGGCACGAGGNAGCAGCTACAGCTTTTTCCGCAAAGTTGCTTAGTTCCCGTTTGGAGTATGAAGAAAGGAGTTTGCGCAAAAAAAACATTGTTGCCGAAAAGAACCACCCAGTAAGATAGGAATTGAAAAACAGAGGAGAGCTTTTGTTTCTATGTATAGAACGAAGCAAAACTAACTCACGCTTGCACAGGAAAACGAAAAACAATGAGACAANAACATGGTACAAAANANAAGCTTAGCCGCAGGCGTAGGGAACGATGCAGTGAAACAAATCCTACTANACTCCGGATACAATATGGAGAACAATATTTTNTGTATACACGTGT]




>consensus_3041#1
GGCAGAATCGGCACGAGGNAGCAGCTACAGCTTTTTCCGCAAAGTTGCTTAGTTCCCGTT
TGGAGTATGAAGAAAGGAGTTTGCGCAAAAAAAACATTGTTGCCGAAAAGAACCACCCAG
TAAGATAGGAATTGAAAAACAGAGGAGAGCTTTTGTTTCTATGTATAGAACGAAGCAAAA
CTAACTCACGCTTGCACAGGAAAACGAAAAACAATGAGACAANAACATGGTACAAAANAN
AAGCTTAGCCGCAGGCGTAGGGAACGATGCAGTGAAACAAATCCTACTANACTCCGGATA
CAATATGGAGAACAATATTTTNTGTATACACGTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3041#0      AATCGCCCGAGGTGATTTCCAGTTAGAGTCCAATTTTCAACATAATAAGTTCACTTCTCA 60
consensus_3041#1      -----------------------------------------------GGCAGAATCGGCA 13
                                                                      *   * *   **

consensus_3041#0      CAAGAAAGAGTCAAGCGTCAAGTGTCCCACAACTATGAGAACCCCTGGAAAACCCTGTAC 120
consensus_3041#1      CGAGGNAGCAGCTA-CAGCTTTTTCCGCAAAGTTGCTTAGTTCCCGTTTGGA----GTAT 68
                      * **  **   * * *  *   *  * ** *  *        ***      *    *** 

consensus_3041#0      TTACTGCTGGATGCTTCTGTACATACCAATCCCGCTAACACAAACAAACAAAACAGAAAC 180
consensus_3041#1      GAAGAAAGGAGTTTGCGCAAAAAAAACATTGTTGCCGAAAAGAACCACCCAGTAAGATAG 128
                        *     *  *        * * * ** *   **  * *  *** * * *   *** * 

consensus_3041#0      CCATTGCCTTGCACCTTTGCTAACGCTTTTAAACATTTCCAGTCGAGTTTTGCTCTTTTA 240
consensus_3041#1      GAATTGAAAAACAGAGGAGAGCTTTTGTTTCTATGTATAGAACGAAGCAAAACTAACTCA 188
                        ****     **     *        ***  *  * *  *    **     **   * *

consensus_3041#0      CGCATGC-CAGGGAATATACAAATCATTTGCCTACTATACCTTTCTTTTAGTNTGTTTTG 299
consensus_3041#1      CGCTTGCACAGGAAAACGAAAAACAATGAGACAANAACATGGTACAAAANANAAGCTTAG 248
                      *** *** **** **   * ***  **  * * *  * *   * *         * ** *

consensus_3041#0      CCA-AAGCGCTACAGCTTTTTCCGCAAAGT------TGCTTAGTTCCGTTTGGAGTATGA 352
consensus_3041#1      CCGCAGGCGTAGGGAACGATGCAGTGAAACAAATCCTACTANACTCCGGATACAATATGG 308
                      **  * ***          * * *  **        * **    ****  *  * **** 

consensus_3041#0      AGAAAGGAGTTTGCGCAAAAAAAACATTGTTGCCGAAAAGAACCACCCAGTAAATAGGAA 412
consensus_3041#1      AGAACAATATTTTNTGTATACACGTGT--------------------------------- 335
                      ****     ***     * * *    *                                 

consensus_3041#0      TTGAAA 418
consensus_3041#1      ------