These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3053#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 735 fasta sequence [AGGTTATCCGTGGAATTTGTTTTCCACCAGTACGAGGGCACCCTGTTACCGCGAACGGTTAGCAGTTTGTCAGCTACTTCAGGCAGCAAACCAACGCGCGATCCTGCAATCCACCTAGGCGGCAAACGCGTGTAGCCAAAGTAACGCCGACCGGGCGGCAAAATTGCATTATCATAAAGCCAATCTCAAAATTTGCCATTTTCAACCTTTCACCAAGATTGCACGGATTTGGTCATCTTTCGCGAAGCACACTTCCCTCATAAGCATGGGGTATCCGTTTCGCAACCCAACCGTACTCTTCGAGGTTCTTTNTTTCCTTCATTTTACCGTCATCGACGTTGTCGGTGGGGCCATACATTGTCTGCTCATGCATTTCAAATTCTAGCGATTACTGTAGAAGGGACCCTTTNNNGTGCAATAATGAAAGTGGTCGCGGAAACTTTTACTATCTGGTCACTCTGCATCTCTACATTAAAATGGAGATATTATGTCTTACCCGTCTTTCCTGCCTATGTGTCAGGGTATTAAACTTCGTGCTTTACTAAAGGCACTAGGAACAAACACAGTCCAGAAGCATTTCAGTTTGAAATCTAAAACTGCATAATAAAATCTNTACCAATACTACAAAAATAACATAAACACGCATGATTCGGTTCATCAATTACTGGAATCAATANTGAACTTATGTACNGCGTCCTNTACTAGTCTAACAAATCCTCTAAATCTTTATTCCTT] [+] EMBL AL934864 [AGGTTATCCGTGGAATTTGTTTTCCACCAGTACGAGGGCACCCTGTTACCGCGAACGGTTAGCAGTTTGTCAGCTACTTCAGGCAGCAAACCAACGCGCGATCCTGCAATCCACCTAGGCGGCAAACGCGTGTAGCCAAAGTAACGCCGACCGGGCGGCAAAATTGCATTATCATAAAGCCAATCTCAAAATTTGCCATTTTCAACCTTTCACCAAGATTGCACGGATTTGGTCATCTTTCGCGAAGCACACTTCCCTCATAAGCATGGGGTATCCGTTTCGCAACCCAACCGTACTCTTCGAGGTTCTTTNTTTCCTTCATTTTACCGTCATCGACGTTGTCGGTGGGGCCATACATTGTCTGCTCATGCATTTCAAATTCTAGCGATTACTGTAGAAGGGACCCTTTNNNGTGCAATAATGAAAGTGGTCGCGGAAACTTTTACTATCTGGTCACTCTGCATCTCTACATTAAAATGGAGATATTATGTCTTACCCGTCTTTCCTGCCTATGTGTCAGGGTATTAAACTTCGTGCTTTACTAAAGGCACTAGGAACAAACACAGTCCAGAAGCATTTCAGTTTGAAATCTAAAACTGCATAATAAAATCTNTACCAATACTACAAAAATAACATAAACACGCATGATTCGGTTCATCAATTACTGGAATCAATANTGAACTTATGTACNGCGTCCTNTACTAGTCTAACAAATCCTCTAAATCTTTATTCCTT] consensusID : consensus_3053#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence [CCGGAAACTTTTACTATCTGGTCACTCTGCATCTCTACATTAAAAATGGAGATATTATGTCTTCCCGTCTTTCCTGCCTATGTGTCGGGGTATTAAACTTCGTGCTTTACTAAAGGCACTAGGAACAAACACAGTCCAGAAGCATTCAGTTTGAAAAATAAAATGATAATAAAATCTTCCAATACTACAAAAATAAATAAACACTCATGATTCGGTTCATCAATTACTGGAATCAATTTTGAATTATGTTTGCGTCCTTTCTTGTTTAAAAATCCTCTAAATCTTTATTCCTTATTGGAAATACTATTGTAATGTTAAACAGTAAGTAGCAAATATAAGCGCCACTGTTTGTAATCTAACAGATTTCCGTACAGACACATTCCACAAAGGGCAAAAATATAACACAAAAATTGTAAAAATATTATAATATGTAAGCTAGTGCTTAAAAATATGTATGATTCATTCTTCTGTAGGTTAAATAATAGCCTCTCTATTTTCTCGCTTACCTTCGCTCACTTTTGTATCTGTTTCGGTGAGATGATATGTATTTATAATAACAATGAGCGTGTAAAGGTCTAGTTTTACTAGCTTGTAAGTACAATACAGGAAGGCCAGCATACATCCTTATTGTAGCGGCTTTGGCCTCTAAGCCGAGAAAGCAGTTTCATACAG] [+] EMBL BM654918 [CCGGAAACTTTTACTATCTGGTCACTCTGCATCTCTACATTAAAAATGGAGATATTATGTCTTCCCGTCTTTCCTGCCTATGTGTCGGGGTATTAAACTTCGTGCTTTACTAAAGGCACTAGGAACAAACACAGTCCAGAAGCATTCAGTTTGAAAAATAAAATGATAATAAAATCTTCCAATACTACAAAAATAAATAAACACTCATGATTCGGTTCATCAATTACTGGAATCAATTTTGAATTATGTTTGCGTCCTTTCTTGTTTAAAAATCCTCTAAATCTTTATTCCTTATTGGAAATACTATTGTAATGTTAAACAGTAAGTAGCAAATATAAGCGCCACTGTTTGTAATCTAACAGATTTCCGTACAGACACATTCCACAAAGGGCAAAAATATAACACAAAAATTGTAAAAATATTATAATATGTAAGCTAGTGCTTAAAAATATGTATGATTCATTCTTCTGTAGGTTAAATAATAGCCTCTCTATTTTCTCGCTTACCTTCGCTCACTTTTGTATCTGTTTCGGTGAGATGATATGTATTTATAATAACAATGAGCGTGTAAAGGTCTAGTTTTACTAGCTTGTAAGTACAATACAGGAAGGCCAGCATACATCCTTATTGTAGCGGCTTTGGCCTCTAAGCCGAGAAAGCAGTTTCATACAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3053#0 AGGTTATCCGTGGAATTTGTTTTCCACCAGTACGAGGGCACCCTGTTACCGCGAACGGTT 60 consensus_3053#1 ---------CCGGAAACTTTTACTATCTGGTCACTCTGCATCTCTACATTAAAAATGGA- 50 **** * ** * ** *** * * ** ** consensus_3053#0 AGCAGTTTGTCAGCTACTTCAGGCAGCAAACCAACGCGCGATCCTGCAATCCAC-CTAGG 119 consensus_3053#1 GATATTATGTCTTCCCGTCTTTCCTGCCTATGTGT-CGGGGTATTAAACTTCGTGCTTTA 109 * * **** * * * ** * ** * * * * * * ** consensus_3053#0 CGGCAAACGCGTGTAGCCAAAGTAACGCCGACCGGGCGGCAAAATTGCATTATCATAAAG 179 consensus_3053#1 CTAAAGGCACTAGGAACAAACACAGTCCAGA---AGCATTCAGTTTGAAAAAT----AAA 162 * * * * * * * ** * * ** ** * *** * ** ** consensus_3053#0 CCAATCTCAAAATTTGCCATT--TTCAACCTTTCACCAAGATTGCACGGATTTGGTCATC 237 consensus_3053#1 ATGATAATAAAATCTTCCAATACTACAAAAATAAATAAACACT-CATGATTCGGTTCATC 221 ** ***** * *** * * *** * * ** * * ** * * * ***** consensus_3053#0 TTTCGCGAAGCACACTTCCCTCATAAGCATGGGGTATCCGTTTCGCAACCCAACCGTACT 297 consensus_3053#1 AATTACTGGAATCAATTTTGAATTATGTTTGCGTCCTTTCTTGTTTAA-------AAATC 274 * * ** ** ** * ** * * ** ** * consensus_3053#0 CTTCGAGGTTCTTTNTTTCCTTCATTTTACCGTCATCGACGTTGTCGGTGGGGCCATACA 357 consensus_3053#1 CTCTAAATCTTTATTCCTTATTGGAAATACTATTGTAATGTTAAACAGTAAG--TAGCAA 332 ** * * * * * ** *** * * * * ** * * * consensus_3053#0 TTGTCTGCTCATGCATTTCAAATTCTAGCGATTACTGTAGAAGGG-ACCCTTTNNNGTGC 416 consensus_3053#1 ATATAAGCGCCACTGTTTGTAATCTAACAGATTTCCGTACAGACACATTCCACAAAGGGC 392 * * ** * *** *** * **** * *** * * * * ** consensus_3053#0 AATAATGAAAGTGGTCGCGGAAACTTTTACTATCTGGTCACTCTGCATCTCTACATTAAA 476 consensus_3053#1 AAAAATATAA-----CACAAAAATTGTAAAAATATTATAA-TATGTAAGCTAGTGCTTAA 446 ** *** ** * * *** * * * ** * * * * ** * * ** consensus_3053#0 ATGGAGATATTATGTCTTACCCGTCTTTCCTGCCTATGTGTCAGGGTATTAAACTTCGTG 536 consensus_3053#1 AAATATGTATGAT---TCATTCTTCTGTA--GGTTAAATAATAGCCTCTCTATTTTCTCG 501 * * *** ** * * * *** * * ** * ** * * * *** * consensus_3053#0 CTTTACTAAAGGCACTA--GGAACAAACACAGTCCAGAAGCATTTCAGTTTGAAATCTAA 594 consensus_3053#1 CTTACCTTCGCTCACTTTTGTATCTGTTTCGGTGAGATGATATGTATTTATAATAACAAT 561 *** ** **** * * * * ** ** * * * * * * * consensus_3053#0 AACTGCATAATAAAAT--CTNTACCAATACTACAAAAATAACATAAACACGCATGATTCG 652 consensus_3053#1 GAGCGTGTAAAGGTCTAGTTTTACTAGC-TTGTAAGTACAATACAGGAAGGCCAGCATAC 620 * * *** * * *** * * ** * ** * * * ** * * consensus_3053#0 GTTCATCAATTACTGGAATCAATANTGAACTTATGTACNGCGTCCTNTACTAGTCTAACA 712 consensus_3053#1 ATCCTTATTGTAGCGGCTTTGGCCTCTAAGCCGAGAAAGCAGTTTCATACAG-------- 672 * * * ** ** * ** * * ** *** consensus_3053#0 AATCCTCTAAATCTTTATTCCTT 735 consensus_3053#1 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||