cluster # 3060

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Anopheles gambiae
cluster # 3060 cluster # 3060 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3060#0 length = 615 sequences # 1

consensus_3060#1 length = 525 sequences # 1

consensusID : consensus_3060#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 615
fasta sequence

                              [CACTACAACTGCTGCGCCTCAAATCGACGGCCGATCCGGTGACGTTGGACGACGAGTCGTTTGCCCGCACGATCGAGGGCCATCTGCGGGTGCGGCTGCGGCACGACGAGCGTCGCCATCGAGATGCGATGGAGAGCGACTGTCCGCATCTGGTAGCCGCCGGAAAGTATTAGGCGCTGGATGATCATCTGCAGGAGGCACGCGCGCTGGTCGAAGTTTCGACCGATGAGTACAGTGAGCTGTGTGCGGAGGTTTGGGCACTGCTAGCCGCTCTGTGGGGAGCACGGGAAGAGCTGGAGGGCGTCGATGAAGCCAGCCATCTGAGCACCATGTTCCGGCGTGACCTCTTCTCCGAATGGATCGAGGACGTGGTCACCATACGCTCGCAGCAGAGCAGCAAAAAGGGCGAAAAGCGCGACTATCTCGACCAGCTGCTCGAGCTGATCCAAACGCACAAGGTGCTGGAGGCGTGCGAGCTCGCTTTCACCAACAACGACATCAATCTGGCGATGCTGCTGGCCCAGATCTCCGGTGGGCCGGTAGTGCGGCAGCTGCTCCAGCACCAGCTCACCTGCTGGCAGGACTCGGAGGCGGATAAGTTTATCGATCCGCGGC]

[+] EMBL BX602485             [CACTACAACTGCTGCGCCTCAAATCGACGGCCGATCCGGTGACGTTGGACGACGAGTCGTTTGCCCGCACGATCGAGGGCCATCTGCGGGTGCGGCTGCGGCACGACGAGCGTCGCCATCGAGATGCGATGGAGAGCGACTGTCCGCATCTGGTAGCCGCCGGAAAGTATTAGGCGCTGGATGATCATCTGCAGGAGGCACGCGCGCTGGTCGAAGTTTCGACCGATGAGTACAGTGAGCTGTGTGCGGAGGTTTGGGCACTGCTAGCCGCTCTGTGGGGAGCACGGGAAGAGCTGGAGGGCGTCGATGAAGCCAGCCATCTGAGCACCATGTTCCGGCGTGACCTCTTCTCCGAATGGATCGAGGACGTGGTCACCATACGCTCGCAGCAGAGCAGCAAAAAGGGCGAAAAGCGCGACTATCTCGACCAGCTGCTCGAGCTGATCCAAACGCACAAGGTGCTGGAGGCGTGCGAGCTCGCTTTCACCAACAACGACATCAATCTGGCGATGCTGCTGGCCCAGATCTCCGGTGGGCCGGTAGTGCGGCAGCTGCTCCAGCACCAGCTCACCTGCTGGCAGGACTCGGAGGCGGATAAGTTTATCGATCCGCGGC]




>consensus_3060#0
CACTACAACTGCTGCGCCTCAAATCGACGGCCGATCCGGTGACGTTGGACGACGAGTCGT
TTGCCCGCACGATCGAGGGCCATCTGCGGGTGCGGCTGCGGCACGACGAGCGTCGCCATC
GAGATGCGATGGAGAGCGACTGTCCGCATCTGGTAGCCGCCGGAAAGTATTAGGCGCTGG
ATGATCATCTGCAGGAGGCACGCGCGCTGGTCGAAGTTTCGACCGATGAGTACAGTGAGC
TGTGTGCGGAGGTTTGGGCACTGCTAGCCGCTCTGTGGGGAGCACGGGAAGAGCTGGAGG
GCGTCGATGAAGCCAGCCATCTGAGCACCATGTTCCGGCGTGACCTCTTCTCCGAATGGA
TCGAGGACGTGGTCACCATACGCTCGCAGCAGAGCAGCAAAAAGGGCGAAAAGCGCGACT
ATCTCGACCAGCTGCTCGAGCTGATCCAAACGCACAAGGTGCTGGAGGCGTGCGAGCTCG
CTTTCACCAACAACGACATCAATCTGGCGATGCTGCTGGCCCAGATCTCCGGTGGGCCGG
TAGTGCGGCAGCTGCTCCAGCACCAGCTCACCTGCTGGCAGGACTCGGAGGCGGATAAGT
TTATCGATCCGCGGC

consensusID : consensus_3060#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 525
fasta sequence

                              [AATCCCCGAGGTTAACCGCTCTGTGGGGAGCACGGGAAGAGCTGGAGGGCGTCGATGAAGCCAGCCATCTGAGCACCATGTTCCGGCGTGACCTCTTCTCCGAATGGATCGAGGACGTGGTCACCATACGCTCGCAGCAGAGCAGCAAAAAGGGCGAAAAGCGCGACTATCTCGACCAGCTGCTCGAGCTGATCCAAACGCACAAGGTGCTGGAGGCGTGCGAGCTCGCTTTCACCAACAACGACATCAATCTGGCGATGCTGCTGGCCCAGATCTCCGGTGGGCCGGTAGTGCGGCAGCTGCTCCAGCACCAGCTCACCTGCTGGCAGGACTCGGAGGCGGATAAGTTTATCGATCCGCGGCGGCTGGAAGCGTTCATGGCGATTGCCGGCATACGCATGATGAGCTCTTCGCACGGTCCCATCAACATGTTCGAGCACGTCGACTGGGTGAAGGCACTGGCGCTGCACCTGTGGTACGTGTGCCCACCGACCGCGTCCATTACGGACGCACTGGTGGGCTACG]

[+] EMBL AL932266             [AATCCCCGAGGTTAACCGCTCTGTGGGGAGCACGGGAAGAGCTGGAGGGCGTCGATGAAGCCAGCCATCTGAGCACCATGTTCCGGCGTGACCTCTTCTCCGAATGGATCGAGGACGTGGTCACCATACGCTCGCAGCAGAGCAGCAAAAAGGGCGAAAAGCGCGACTATCTCGACCAGCTGCTCGAGCTGATCCAAACGCACAAGGTGCTGGAGGCGTGCGAGCTCGCTTTCACCAACAACGACATCAATCTGGCGATGCTGCTGGCCCAGATCTCCGGTGGGCCGGTAGTGCGGCAGCTGCTCCAGCACCAGCTCACCTGCTGGCAGGACTCGGAGGCGGATAAGTTTATCGATCCGCGGCGGCTGGAAGCGTTCATGGCGATTGCCGGCATACGCATGATGAGCTCTTCGCACGGTCCCATCAACATGTTCGAGCACGTCGACTGGGTGAAGGCACTGGCGCTGCACCTGTGGTACGTGTGCCCACCGACCGCGTCCATTACGGACGCACTGGTGGGCTACG]




>consensus_3060#1
AATCCCCGAGGTTAACCGCTCTGTGGGGAGCACGGGAAGAGCTGGAGGGCGTCGATGAAG
CCAGCCATCTGAGCACCATGTTCCGGCGTGACCTCTTCTCCGAATGGATCGAGGACGTGG
TCACCATACGCTCGCAGCAGAGCAGCAAAAAGGGCGAAAAGCGCGACTATCTCGACCAGC
TGCTCGAGCTGATCCAAACGCACAAGGTGCTGGAGGCGTGCGAGCTCGCTTTCACCAACA
ACGACATCAATCTGGCGATGCTGCTGGCCCAGATCTCCGGTGGGCCGGTAGTGCGGCAGC
TGCTCCAGCACCAGCTCACCTGCTGGCAGGACTCGGAGGCGGATAAGTTTATCGATCCGC
GGCGGCTGGAAGCGTTCATGGCGATTGCCGGCATACGCATGATGAGCTCTTCGCACGGTC
CCATCAACATGTTCGAGCACGTCGACTGGGTGAAGGCACTGGCGCTGCACCTGTGGTACG
TGTGCCCACCGACCGCGTCCATTACGGACGCACTGGTGGGCTACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3060#0      CACTACAACTGCTGCGCCTCAAATCGACGGCCGATCCGGTGACGTTGGACGACGAGTCGT 60
consensus_3060#1      ------------------------------------------------------------
                                                                                  

consensus_3060#0      TTGCCCGCACGATCGAGGGCCATCTGCGGGTGCGGCTGCGGCACGACGAGCGTCGCCATC 120
consensus_3060#1      ------------------------------------------------------------
                                                                                  

consensus_3060#0      GAGATGCGATGGAGAGCGACTGTCCGCATCTGGTAGCCGCCGGAAAGTATTAGGCGCTGG 180
consensus_3060#1      ------------------------------------------------------------
                                                                                  

consensus_3060#0      ATGATCATCTGCAGGAGGCACGCGCGCTGGTCGAAGTTTCGACCGATGAGTACAGTGAGC 240
consensus_3060#1      ------------------------------------------------------------
                                                                                  

consensus_3060#0      TGTGTGCGGAGGTTTGGGCACTGCTAGCCGCTCTGTGGGGAGCACGGGAAGAGCTGGAGG 300
consensus_3060#1      --------AATCCCCGAG----GTTAACCGCTCTGTGGGGAGCACGGGAAGAGCTGGAGG 48
                               *     * *    * ** *********************************

consensus_3060#0      GCGTCGATGAAGCCAGCCATCTGAGCACCATGTTCCGGCGTGACCTCTTCTCCGAATGGA 360
consensus_3060#1      GCGTCGATGAAGCCAGCCATCTGAGCACCATGTTCCGGCGTGACCTCTTCTCCGAATGGA 108
                      ************************************************************

consensus_3060#0      TCGAGGACGTGGTCACCATACGCTCGCAGCAGAGCAGCAAAAAGGGCGAAAAGCGCGACT 420
consensus_3060#1      TCGAGGACGTGGTCACCATACGCTCGCAGCAGAGCAGCAAAAAGGGCGAAAAGCGCGACT 168
                      ************************************************************

consensus_3060#0      ATCTCGACCAGCTGCTCGAGCTGATCCAAACGCACAAGGTGCTGGAGGCGTGCGAGCTCG 480
consensus_3060#1      ATCTCGACCAGCTGCTCGAGCTGATCCAAACGCACAAGGTGCTGGAGGCGTGCGAGCTCG 228
                      ************************************************************

consensus_3060#0      CTTTCACCAACAACGACATCAATCTGGCGATGCTGCTGGCCCAGATCTCCGGTGGGCCGG 540
consensus_3060#1      CTTTCACCAACAACGACATCAATCTGGCGATGCTGCTGGCCCAGATCTCCGGTGGGCCGG 288
                      ************************************************************

consensus_3060#0      TAGTGCGGCAGCTGCTCCAGCACCAGCTCACCTGCTGGCAGGACTCGGAGGCGGATAAGT 600
consensus_3060#1      TAGTGCGGCAGCTGCTCCAGCACCAGCTCACCTGCTGGCAGGACTCGGAGGCGGATAAGT 348
                      ************************************************************

consensus_3060#0      TTATCGATCCGCGGC--------------------------------------------- 615
consensus_3060#1      TTATCGATCCGCGGCGGCTGGAAGCGTTCATGGCGATTGCCGGCATACGCATGATGAGCT 408
                      ***************                                             

consensus_3060#0      ------------------------------------------------------------
consensus_3060#1      CTTCGCACGGTCCCATCAACATGTTCGAGCACGTCGACTGGGTGAAGGCACTGGCGCTGC 468
                                                                                  

consensus_3060#0      ---------------------------------------------------------
consensus_3060#1      ACCTGTGGTACGTGTGCCCACCGACCGCGTCCATTACGGACGCACTGGTGGGCTACG 525