cluster # 3100

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Anopheles gambiae
cluster # 3100 cluster # 3100 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3100#0 length = 325 sequences # 1

consensus_3100#1 length = 293 sequences # 1

consensusID : consensus_3100#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 325
fasta sequence

                              [GTGCTTGTGTTGTGGCTGAGAAGATATTAAAAAAAACAACAACTCACACACACACTCAAGTGTAGATATTGTTCGCGTAAGCATTAGGGTATCGATTAGGCAATGTGCGATTCTCGATAGTGTTTTGGATGTGAAAGATAAAGAATATTGAAATAGGTGGGAGTGCCTTTCGTGAATGAAATGAAGCTTAACTGAGGAAGGAAGCACACTGAGCACTGATATGTAAGGAAATTGAGCGAGCTTTTCTGAAAAGCTGTGTGTAGTGTATAATAGTAACATTTTGTCATACATACAAAATCTTACATTCGAATAATGATAATAATCT]

[+] EMBL BM578678             [GTGCTTGTGTTGTGGCTGAGAAGATATTAAAAAAAACAACAACTCACACACACACTCAAGTGTAGATATTGTTCGCGTAAGCATTAGGGTATCGATTAGGCAATGTGCGATTCTCGATAGTGTTTTGGATGTGAAAGATAAAGAATATTGAAATAGGTGGGAGTGCCTTTCGTGAATGAAATGAAGCTTAACTGAGGAAGGAAGCACACTGAGCACTGATATGTAAGGAAATTGAGCGAGCTTTTCTGAAAAGCTGTGTGTAGTGTATAATAGTAACATTTTGTCATACATACAAAATCTTACATTCGAATAATGATAATAATCT]




>consensus_3100#0
GTGCTTGTGTTGTGGCTGAGAAGATATTAAAAAAAACAACAACTCACACACACACTCAAG
TGTAGATATTGTTCGCGTAAGCATTAGGGTATCGATTAGGCAATGTGCGATTCTCGATAG
TGTTTTGGATGTGAAAGATAAAGAATATTGAAATAGGTGGGAGTGCCTTTCGTGAATGAA
ATGAAGCTTAACTGAGGAAGGAAGCACACTGAGCACTGATATGTAAGGAAATTGAGCGAG
CTTTTCTGAAAAGCTGTGTGTAGTGTATAATAGTAACATTTTGTCATACATACAAAATCT
TACATTCGAATAATGATAATAATCT

consensusID : consensus_3100#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 293
fasta sequence

                              [ACACACACACACACACACACACACACACACACACACTCAAGTGTAGATATTGTTCACGTAAGCATTAGGGTATCGATTAGGCAATGAGCGATTCTCGATAGTGTTTGGGTATGAAAGATAAAGAATATTGAATTAGGTGTGCGTGCCTTTCGTGAATGAAAAGAAGCTTAACTGAGGACTGAGCACTGATATGTAAGGAAATTGAGCGAGCTTTTCTGAAAAGCTGTGTGTAGTGTATAAAAGTAAAATTTTGTCATGCATACAAAATCTTACATTCGAATAATTCGAAATAA]

[-] EMBL BM612225             [ACACACACACACACACACACACACACACACACACACTCAAGTGTAGATATTGTTCACGTAAGCATTAGGGTATCGATTAGGCAATGAGCGATTCTCGATAGTGTTTGGGTATGAAAGATAAAGAATATTGAATTAGGTGTGCGTGCCTTTCGTGAATGAAAAGAAGCTTAACTGAGGACTGAGCACTGATATGTAAGGAAATTGAGCGAGCTTTTCTGAAAAGCTGTGTGTAGTGTATAAAAGTAAAATTTTGTCATGCATACAAAATCTTACATTCGAATAATTCGAAATAA]




>consensus_3100#1
ACACACACACACACACACACACACACACACACACACTCAAGTGTAGATATTGTTCACGTA
AGCATTAGGGTATCGATTAGGCAATGAGCGATTCTCGATAGTGTTTGGGTATGAAAGATA
AAGAATATTGAATTAGGTGTGCGTGCCTTTCGTGAATGAAAAGAAGCTTAACTGAGGACT
GAGCACTGATATGTAAGGAAATTGAGCGAGCTTTTCTGAAAAGCTGTGTGTAGTGTATAA
AAGTAAAATTTTGTCATGCATACAAAATCTTACATTCGAATAATTCGAAATAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3100#0      GTGCTTGTGTTGTGGCTGAGAAGATATTAAAAAAAACAACAACTCACACACACACTCAAG 60
consensus_3100#1      -------------------ACACACACACACACACACACACACACACACACACACTCAAG 41
                                           * * *   * * * ***   ** ****************

consensus_3100#0      TGTAGATATTGTTCGCGTAAGCATTAGGGTATCGATTAGGCAATGTGCGATTCTCGATAG 120
consensus_3100#1      TGTAGATATTGTTCACGTAAGCATTAGGGTATCGATTAGGCAATGAGCGATTCTCGATAG 101
                      ************** ****************************** **************

consensus_3100#0      TGTTTTGGATGTGAAAGATAAAGAATATTGAAATAGGTGGGAGTGCCTTTCGTGAATGAA 180
consensus_3100#1      TGTTT-GGGTATGAAAGATAAAGAATATTGAATTAGGTGTGCGTGCCTTTCGTGAATGAA 160
                      ***** ** * ********************* ****** * ******************

consensus_3100#0      ATGAAGCTTAACTGAGGAAGGAAGCACACTGAGCACTGATATGTAAGGAAATTGAGCGAG 240
consensus_3100#1      AAGAAGCTTAACTGAGGA----------CTGAGCACTGATATGTAAGGAAATTGAGCGAG 210
                      * ****************          ********************************

consensus_3100#0      CTTTTCTGAAAAGCTGTGTGTAGTGTATAATAGTAACATTTTGTCATACATACAAAATCT 300
consensus_3100#1      CTTTTCTGAAAAGCTGTGTGTAGTGTATAAAAGTAAAATTTTGTCATGCATACAAAATCT 270
                      ****************************** ***** ********** ************

consensus_3100#0      TACATTCGAATAATG-ATAATAATCT 325
consensus_3100#1      TACATTCGAATAATTCGAAATAA--- 293
                      **************    *****