These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3113#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 646 fasta sequence [CCGCCCGAATGGTCGATCGTCGATCGCGCTTCGCTTCGCCTGCGATTTGCAGGTGGATTAATCGGACCACAAGCACCACTCGGCCGGCAGTCAGAGCCGAACCGCGCAGCCGTCTCTCGCTCAATTTCGCGTGTGATTTTGTGAAAAGAAAGAACCATCAACCCTCCACGGGCTTGTAAGCCCGCGGGCGGCCGTAGCAGTGTACAAAACCTGAAATCCAGGACCCGTGGCAGGAAATAGAGATAACTCGGAAGCGTATCGCAGCCTCCACAATCGCTGATGTCGCCAAGAGAGCGGAGAGCAGCTACCTGGCCTGCGAGCAAACAGTAACCACTGCCAACCTTCACCGGGGACAGCGCACCGTTACGAGCGGCTCGGGTTCAAGTTCTCGGCAAGATAGTTCTTCCCTTTCGTGTAGCCCACGCTCACACGCTCGCGCGCGCTTCTTCGCCCCTTCAACCGTGCTATTAAACCGTACACACAAACCTGTCGCGCAGCTCGATCGGATTCGCAGCCAGTCTTGTTAGTGCCGTCGCAGCGGAAGGAACGAACGTGTCGGACGCGCTCTATGTGTGACGTGCAAACTGCTATCGCACGAAAATGAAGCACGATTCGGCTGGAGCGGAAAGTGGCATTGTGAATCCCA] [+] EMBL BM600753 [CCGCCCGAATGGTCGATCGTCGATCGCGCTTCGCTTCGCCTGCGATTTGCAGGTGGATTAATCGGACCACAAGCACCACTCGGCCGGCAGTCAGAGCCGAACCGCGCAGCCGTCTCTCGCTCAATTTCGCGTGTGATTTTGTGAAAAGAAAGAACCATCAACCCTCCACGGGCTTGTAAGCCCGCGGGCGGCCGTAGCAGTGTACAAAACCTGAAATCCAGGACCCGTGGCAGGAAATAGAGATAACTCGGAAGCGTATCGCAGCCTCCACAATCGCTGATGTCGCCAAGAGAGCGGAGAGCAGCTACCTGGCCTGCGAGCAAACAGTAACCACTGCCAACCTTCACCGGGGACAGCGCACCGTTACGAGCGGCTCGGGTTCAAGTTCTCGGCAAGATAGTTCTTCCCTTTCGTGTAGCCCACGCTCACACGCTCGCGCGCGCTTCTTCGCCCCTTCAACCGTGCTATTAAACCGTACACACAAACCTGTCGCGCAGCTCGATCGGATTCGCAGCCAGTCTTGTTAGTGCCGTCGCAGCGGAAGGAACGAACGTGTCGGACGCGCTCTATGTGTGACGTGCAAACTGCTATCGCACGAAAATGAAGCACGATTCGGCTGGAGCGGAAAGTGGCATTGTGAATCCCA] consensusID : consensus_3113#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 327 fasta sequence [CCGCCCACGCGTCCGCGCAGCGGAAGGAACGAACGTGTCGGACGCGCTCTATGTGTGACGTGCAAACTGCTATCGCACGAAAATGAAGCACGATTCGGTTGGAGCGGAAAGTGGCATTGTGAATCCCACCTTTTACCAGGAGCTATCCGAAGAGCAATCCGTCCCGGATGTGACGCCCCGTGGTGACGCTCTGCCGCAGGTGACCGTTTCGCGACCACTCTATCAGCAGCATCAGCTGAACGATGCGTACCAGTATCGCAAACCGAAACGGGCACTGCAGAGGGAGTTGAAGACGCGAATGCGTAAAGTGGACGCGAAGACCTGCTG] [+] EMBL BM578719 [CCGCCCACGCGTCCGCGCAGCGGAAGGAACGAACGTGTCGGACGCGCTCTATGTGTGACGTGCAAACTGCTATCGCACGAAAATGAAGCACGATTCGGTTGGAGCGGAAAGTGGCATTGTGAATCCCACCTTTTACCAGGAGCTATCCGAAGAGCAATCCGTCCCGGATGTGACGCCCCGTGGTGACGCTCTGCCGCAGGTGACCGTTTCGCGACCACTCTATCAGCAGCATCAGCTGAACGATGCGTACCAGTATCGCAAACCGAAACGGGCACTGCAGAGGGAGTTGAAGACGCGAATGCGTAAAGTGGACGCGAAGACCTGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3113#0 CCGCCCGAATGGTCGATCGTCGATCGCGCTTCGCTTCGCCTGCGATTTGCAGGTGGATTA 60 consensus_3113#1 ------------------------------------------------------------ consensus_3113#0 ATCGGACCACAAGCACCACTCGGCCGGCAGTCAGAGCCGAACCGCGCAGCCGTCTCTCGC 120 consensus_3113#1 ------------------------------------------------------------ consensus_3113#0 TCAATTTCGCGTGTGATTTTGTGAAAAGAAAGAACCATCAACCCTCCACGGGCTTGTAAG 180 consensus_3113#1 ------------------------------------------------------------ consensus_3113#0 CCCGCGGGCGGCCGTAGCAGTGTACAAAACCTGAAATCCAGGACCCGTGGCAGGAAATAG 240 consensus_3113#1 ------------------------------CCGCCCACGCGTCCGCGCAGCGGAAGGAAC 30 * * * * * ** ** * * * consensus_3113#0 AGATAACTCGGAAGCGTATCGCAGCCTCCACAATCGCTGATGTCGCCAAGAGAGCGGAGA 300 consensus_3113#1 GAACGTGTCGGACGCGCTCTATGTGTGACGTGCAAACTGCTATCGC-ACGAAAATGAAGC 89 * ***** *** * *** * **** * ** * * ** consensus_3113#0 GCAGCTACCTGGCCTGCGAGCAAACAGTAACCACTGCCAACCTTCACCGGGGACAGCGCA 360 consensus_3113#1 ACGATTCGGTTG-----GAGCGGAAAGTGGC-ATTGTGAATCC-CACCTTTTACCAGGAG 142 * * * * **** * *** * * ** ** * **** ** * consensus_3113#0 CCGTTACGAGCGGCTCGGGTTCAAGTTCTCGGCAAGATAGTTCTTCCCTTTCGTGTAGCC 420 consensus_3113#1 CTATC-CGAAGAGC---AATCC--GTCCCGGATGTGACG------CCCCGTGGTG----- 185 * * *** ** * * ** * * ** *** * *** consensus_3113#0 CACGCTCACACGCTCGCGCGCGCTTCTTCGCCCCTTCAACCGTGCTATTAAACCGTACAC 480 consensus_3113#1 -ACGCTCTGCCGCAGGTGACCGTTTCGCGACCACTCTATCAGCAGCATCAGCTGAACGAT 244 ****** *** * * ** *** ** ** * * * ** * * consensus_3113#0 ACAAACCTGTCGCGCAGCTCGATCGGATTCGCAGCCAGTCTTGTTAGTGCCGTCGCAGCG 540 consensus_3113#1 GCGTACCAGTATCGCAAACCGAAACGGG-CACTGCAGAGGGAGTTGAAGACGCGAATGCG 303 * *** ** **** *** * * * ** *** * ** *** consensus_3113#0 GAAGGAACGAACGTGTCGGACGCGCTCTATGTGTGACGTGCAAACTGCTATCGCACGAAA 600 consensus_3113#1 TAAAG--TGGACGCGA-AGACCTGCTG--------------------------------- 327 ** * * *** * *** *** consensus_3113#0 ATGAAGCACGATTCGGCTGGAGCGGAAAGTGGCATTGTGAATCCCA 646 consensus_3113#1 ---------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||