These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3118#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence [CAAGAATCGCCCGAGGCNGTAAGCGATCGATCATGCACGATTTAAAGTTTGTAAGATATGTAAATCCTCTCTTTCTTTGGTTCTGCGTGCCACACACACACACCCCCCCCCCTTTTCCCCCTTTTTAAAAAAGTCTTTTTCAAAAACGNGTTTTTTTAAAACACCTTTTTTTACGCTCTCTACCGGGGGGGGCGAGTATTTTTCCCCCAGCCCCCCCACGAANTTTTTTCCGCGTTTTACNAGCTTTTCTAGCAAAAAACGCCCCCAAAAAACTTTTTTGGGGTTTTCAATTTACCCCCCTTTTATACTTTTGGGGAAAATTTTTTTTTCCCCCCCACATTTTTTTCGCGGGGGGGGCCCCACCACTTTTTACCCCCCAAAAAAGGCGGACGTCTTCCTGAGATTTTTTCNTTTTCTACACAAAANACACAACCGCCCGCGCGCGGNGACGTGCCACACACACGCGCTTCTCTCTTTTCTGCGGGGGGGGGGCTGCACGCGCGCGGGGGGCGAGGCCACACATNTTTTTTGCGTACTAANCAAACCGTTAACCGGCTACACCACACCATGCACACAAAAACCGGTCACACCCACAACCAGTGNCGCAACAAAAAACAACGCCTCTTTTTTTTTNACTACAAAACAAGACAAAAAAACACGCACAAACAAACCAAAA] [+] EMBL AL934917 [CAAGAATCGCCCGAGGCNGTAAGCGATCGATCATGCACGATTTAAAGTTTGTAAGATATGTAAATCCTCTCTTTCTTTGGTTCTGCGTGCCACACACACACACCCCCCCCCCTTTTCCCCCTTTTTAAAAAAGTCTTTTTCAAAAACGNGTTTTTTTAAAACACCTTTTTTTACGCTCTCTACCGGGGGGGGCGAGTATTTTTCCCCCAGCCCCCCCACGAANTTTTTTCCGCGTTTTACNAGCTTTTCTAGCAAAAAACGCCCCCAAAAAACTTTTTTGGGGTTTTCAATTTACCCCCCTTTTATACTTTTGGGGAAAATTTTTTTTTCCCCCCCACATTTTTTTCGCGGGGGGGGCCCCACCACTTTTTACCCCCCAAAAAAGGCGGACGTCTTCCTGAGATTTTTTCNTTTTCTACACAAAANACACAACCGCCCGCGCGCGGNGACGTGCCACACACACGCGCTTCTCTCTTTTCTGCGGGGGGGGGGCTGCACGCGCGCGGGGGGCGAGGCCACACATNTTTTTTGCGTACTAANCAAACCGTTAACCGGCTACACCACACCATGCACACAAAAACCGGTCACACCCACAACCAGTGNCGCAACAAAAAACAACGCCTCTTTTTTTTTNACTACAAAACAAGACAAAAAAACACGCACAAACAAACCAAAA] consensusID : consensus_3118#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence [AATGGAGTTAGGTTAAGTTTGGGAACAGCAGAACGGGAGTGTAGGGTTGGCAAAGAAAAACACACACACACACATACTAAAGATAATAAGGCTTGCAGGAGAGGCAACGGTGTTCGTGACTCGGGGAACTTGGGGGTTGGTATAGGGAATTTAAGTAGTACAAGCCGTAAGCGATCGATCATGCACGATTTAAAGTTTGTAAGATATGTAAATCCTCTCTTTCTTTGGTTCTGCGTGCCACACACACACACCTCTATATATTGTCCTTTTGAACATGTTCTTGATCTGCTCAGGTTTCGTGATTAGTGGTTAATAGTAAAAAAAATAAAAACCATGATCACACTCCTCCTACTGCGCTATACTGGGACGGATATCCGGTGAAACCAAACAGACACATACACACACGGTAGAACAGAACATATTAATTACACTGTTTAATAATAATAATCAACCGCAAGCCTGTCCCGCTGTATCGATCAACCAGTTTCCCCTCTTCCTGGCCCCCAGGTCCTTTTGGTTCCTCTTCCTGGTCCCCCAGGTCCTCTTCCCAGGCATGAGGAGAAGAGTATGTGGAATACGGCTTTAAGTTAAGTTGCAAGA] [+] EMBL BX627116 [AATGGAGTTAGGTTAAGTTTGGGAACAGCAGAACGGGAGTGTAGGGTTGGCAAAGAAAAACACACACACACACATACTAAAGATAATAAGGCTTGCAGGAGAGGCAACGGTGTTCGTGACTCGGGGAACTTGGGGGTTGGTATAGGGAATTTAAGTAGTACAAGCCGTAAGCGATCGATCATGCACGATTTAAAGTTTGTAAGATATGTAAATCCTCTCTTTCTTTGGTTCTGCGTGCCACACACACACACCTCTATATATTGTCCTTTTGAACATGTTCTTGATCTGCTCAGGTTTCGTGATTAGTGGTTAATAGTAAAAAAAATAAAAACCATGATCACACTCCTCCTACTGCGCTATACTGGGACGGATATCCGGTGAAACCAAACAGACACATACACACACGGTAGAACAGAACATATTAATTACACTGTTTAATAATAATAATCAACCGCAAGCCTGTCCCGCTGTATCGATCAACCAGTTTCCCCTCTTCCTGGCCCCCAGGTCCTTTTGGTTCCTCTTCCTGGTCCCCCAGGTCCTCTTCCCAGGCATGAGGAGAAGAGTATGTGGAATACGGCTTTAAGTTAAGTTGCAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3118#0 CAAGAATCGCCCGAGGCNGTAAGCGATCGATCATGCACGATTTAAAGTTTGTAAGATATG 60 consensus_3118#1 ----------------------------AATGGAGTTAGGTT--AAGTTTGGGAACAGCA 30 ** * * ** ******* * consensus_3118#0 TAAATCCTCTCTTTCTTTGGTTCTGCGTGCCACACACACACACCCCCCCCCCTTTTCCCC 120 consensus_3118#1 GAACGGGAGTGTAGGGTTGGCAAAGAAAAACACACACACACACATACTAAAGATAATAAG 90 ** * * **** * ************* * * consensus_3118#0 CTTTTTAAAAAAGTCTTTTTCAAAAACGNGTTTTTTTAAAACACCTTTTTTTACGCTCTC 180 consensus_3118#1 GCTTGCAGGAGAGGC---------AACGG-TGTTCGTGACTCGGGGAACTTGGGGGTTGG 140 ** * * ** * **** * ** * * * ** * * consensus_3118#0 TACCGGGGGGGGCGAGTATTTTTCCCCCAGCCCCCCCACGAANTTTTTTCCGCGTTTTAC 240 consensus_3118#1 TAT-AGGGAATTTAAGTAGTA------CAAGCCGTAAGCGATCGATCATGCACGATTTA- 192 ** *** **** * ** ** *** * * * ** **** consensus_3118#0 NAGCTTTTCTAGCAAAAAACGCCCCCAAAAAACTTTTTTGGGGTTTTCAATTTACCCCCC 300 consensus_3118#1 AAGTTTGTAAGATATGTAAATCCTCT------CTTTCTTTGGTTCTGCG---TGCCACAC 243 ** ** * * ** ** * **** ** ** * * * * ** * * consensus_3118#0 TTTTATACTTTTGGGGAAAATTTTTTTTTCCCCCCCACATTTTTTTCGCGGGGGGGGCCC 360 consensus_3118#1 ACACACACCTCTA---TATATTGTCCTTTTGAACATGTTCTTGATCTGCTCAGGTTTCGT 300 * ** * * * *** * *** * ** * ** ** * consensus_3118#0 CACCACTTTTTACCCCCCAAAAAAGGCGGACGTCTTCCTGAGATTTTTTCNTTTTCTACA 420 consensus_3118#1 GATTAGTGGTTAATAGT-AAAAAAAATAAAAACCATGATCACACTCCTCCTACTGCGCTA 359 * * * *** ****** * * * * * * * * * * * * consensus_3118#0 CAAAANACACAACCGCCCGCGCGCGGNGACGTGCCACACACACGCGCTTCTCTCTTTTCT 480 consensus_3118#1 TACTGGG-ACGGATATCCGGTGAAACCAAACAGACACATACACACACGGTAGAACAGAAC 418 * ** *** * * **** **** * * consensus_3118#0 GCGGGGGGGGGGCTGCACGCGCGCGGGGGGCGAGGCCACACATNTTTTTTGC-GTACTAA 539 consensus_3118#1 ATATTAATTACACTGTTTAATAATAATAATCAA--CCGCAAGCCTGTCCCGCTGTATCGA 476 *** * * ** ** * * ** *** * consensus_3118#0 NCAAACCGTTAACCGGCTACACCACACCATGCACACAAAAACCGGTCACACCCACAACCA 599 consensus_3118#1 TC--------AACCAGTTTCCCCTCTTCCTGGCCCCCAGGTCCTTTTGGTTCCTCTTCC- 527 * **** * * * ** * * ** * * * ** * ** * ** consensus_3118#0 GTGNCGCAACAAAAAACAACGCCTCTTTTTTTTTNACTACAAAACAAGACAAAAAAACAC 659 consensus_3118#1 -TGGTCCCCCAGG-----TCCTCTTCCCAGGCATGAGGAGAAGAGTATGTGGAATACGGC 581 ** * ** * ** * * * ** * * ** * * consensus_3118#0 GCACAAACAAACCAAAA-- 676 consensus_3118#1 TTTAAGTTAAGTTGCAAGA 600 * ** ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||