These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3129#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 702 fasta sequence [CAGAATCGGCACGATGGGCTGCCGGCACTACTGTCGCATTGTTTCGTGTACCTGTTTCTGACCACTTTCTACACCAACAGTAAGAGCAATCTGTCGCTCGGTCAAATGACCCAGGCCCGGCTGGTTGGTGTGAATGTGTTCTGGAGTGTCGTAACGCTTGCCGCTACGGTGGCCGGCTACCGAAGCGGCTACATTCCTATGGTGCTACTCGTCTGCTCCCTTGCGTCCTCCACGCTGAACCTGCTCTTCAACGCAAGTCGAACGCATCGAGCTTGGATGTACATTCACCTAGCCGGCCAGCTGCCCGCACTGCTCTGGGCCACTAACTTCTACAACGTGCTCATTGCACTGTTCGTACCGATCACGGGCCGATTTGGAGGGTCGCGCAATCCGGAAGTGTTTATCTCGCTGCTAGCCGCTGGCGGTACGCTTCTCTGCTGCAGCTATTTAATTCCATTCATTGCTCAGCTGCGCAAAATGATGAATTTCACCGCAACTGTCAGCCATCACCGTGCTAACGCTTGTTGCTGGCATGCTTTAAGCCCCTCTCGGGAATGCCGTATCGGGGATGAGAGTATGGGCCANCCGGAACCGAACCCCCCCAGGGGAGNAACTACGTAACGGCACACTTTTCCGGAGTTGTTCCACGATGAAGTTCGGCCTGTGACCAAGAAGGCCACCGACACGCGGGGAATGCATTTT] [+] EMBL BX469840 [CAGAATCGGCACGATGGGCTGCCGGCACTACTGTCGCATTGTTTCGTGTACCTGTTTCTGACCACTTTCTACACCAACAGTAAGAGCAATCTGTCGCTCGGTCAAATGACCCAGGCCCGGCTGGTTGGTGTGAATGTGTTCTGGAGTGTCGTAACGCTTGCCGCTACGGTGGCCGGCTACCGAAGCGGCTACATTCCTATGGTGCTACTCGTCTGCTCCCTTGCGTCCTCCACGCTGAACCTGCTCTTCAACGCAAGTCGAACGCATCGAGCTTGGATGTACATTCACCTAGCCGGCCAGCTGCCCGCACTGCTCTGGGCCACTAACTTCTACAACGTGCTCATTGCACTGTTCGTACCGATCACGGGCCGATTTGGAGGGTCGCGCAATCCGGAAGTGTTTATCTCGCTGCTAGCCGCTGGCGGTACGCTTCTCTGCTGCAGCTATTTAATTCCATTCATTGCTCAGCTGCGCAAAATGATGAATTTCACCGCAACTGTCAGCCATCACCGTGCTAACGCTTGTTGCTGGCATGCTTTAAGCCCCTCTCGGGAATGCCGTATCGGGGATGAGAGTATGGGCCANCCGGAACCGAACCCCCCCAGGGGAGNAACTACGTAACGGCACACTTTTCCGGAGTTGTTCCACGATGAAGTTCGGCCTGTGACCAAGAAGGCCACCGACACGCGGGGAATGCATTTT] consensusID : consensus_3129#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence [CCGCCGTTCGCACACACCGTCGGGGAGGAGATCTTCCAGCTAGGCCTCATTCCCTCCGATACGGACTTTCGAATGTTTCGCGATTACGGCGAGGTGCCCGGGATGGACTTTGCCCACATCGCGAACGGGTACCGGTACCACACGCGCTACGACTCGATGGATTTTCTCTCGCTCGATGTGCTGCAGCGCACCGGCGACAATGTGCTCGCCCTGACGCGCGATCTGGCCGAGAGCGATGAGCTGGCCGCGTCCGACCTACCGGTCGGGGAGACCGTGTTCTTCGACTTTATCGGACTCGCGTTTGTGCATTACTCTGCCTCCAGTGGCCGTTTGATTAATCTGGCAGTGGTGGTACTTTCCCTTATCGTGCCTTTGATGTGCTTTGCCCGTGCGCGCTTCGATGACGTTCTGCGGGAAGTTATCGTCGGATTGGTGGGCACCGTGTTTGGGACCGTTTTCAGCATCATCGCTTGTACCACCATTGCGCGCCAGTTGGACTTTTTCGGAAAAAGCATGACCTGGTACACGAACACCCATCTGATCTTGGGACTGTACTGCTGCCCGGCACTACTGTCGCATTGTTTCGTGTACCTGTTTCTGACCACTTTCTACACCAACAGTAAGAGCAATCTGTCGCTCGGTCAAATGACCCAGGCCCGGCTGGTTGGTGTGAATGTGTT] [+] EMBL BM642709 [CCGCCGTTCGCACACACCGTCGGGGAGGAGATCTTCCAGCTAGGCCTCATTCCCTCCGATACGGACTTTCGAATGTTTCGCGATTACGGCGAGGTGCCCGGGATGGACTTTGCCCACATCGCGAACGGGTACCGGTACCACACGCGCTACGACTCGATGGATTTTCTCTCGCTCGATGTGCTGCAGCGCACCGGCGACAATGTGCTCGCCCTGACGCGCGATCTGGCCGAGAGCGATGAGCTGGCCGCGTCCGACCTACCGGTCGGGGAGACCGTGTTCTTCGACTTTATCGGACTCGCGTTTGTGCATTACTCTGCCTCCAGTGGCCGTTTGATTAATCTGGCAGTGGTGGTACTTTCCCTTATCGTGCCTTTGATGTGCTTTGCCCGTGCGCGCTTCGATGACGTTCTGCGGGAAGTTATCGTCGGATTGGTGGGCACCGTGTTTGGGACCGTTTTCAGCATCATCGCTTGTACCACCATTGCGCGCCAGTTGGACTTTTTCGGAAAAAGCATGACCTGGTACACGAACACCCATCTGATCTTGGGACTGTACTGCTGCCCGGCACTACTGTCGCATTGTTTCGTGTACCTGTTTCTGACCACTTTCTACACCAACAGTAAGAGCAATCTGTCGCTCGGTCAAATGACCCAGGCCCGGCTGGTTGGTGTGAATGTGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3129#0 CAGAATCGGCACGATGGGCTGCCGGCACTACTGTCGCATTGTTTCGTGTACCTGTTTCTG 60 consensus_3129#1 ---------------------CCGCCGTT-CGCACACACCGTCGGGGAGGAGATCTTCCA 38 *** * * * * ** ** * *** consensus_3129#0 ACCACTTTCTACACCAACAGTAAGAGCAATCTGTCGCTCGGTCAAATGACCCAGGCCCGG 120 consensus_3129#1 GCTAGGCCTCATTCCCTCCGATA---CGGACTTTCGAATGTTTCG-CGATTACGGCGAGG 94 * * * ** * * * * ** *** * * ** *** ** consensus_3129#0 CTGGTTGGTGTGAATGTGTTCTGGAGTGTCGTAACGCTTGCCGCTACGGTGGCCGGCTAC 180 consensus_3129#1 -TGCCCGGGATGGACTTTGCCCACATCGCG--AACGGGTACCGGTACCACACGCG-CTAC 150 ** ** ** * * * * * **** * *** *** ** **** consensus_3129#0 CGAAGCGGCTACATTCCTATGGTGCTACTCGTCTGCTCCCTTGCGTCCTCCACGCTGAAC 240 consensus_3129#1 -GACTCGATGGATTTTCTCTCGCTCGA----TGTGCTGCAGCGCACCGGCGACAATGTGC 205 ** ** ** ** * * * * * **** * ** * * ** ** * consensus_3129#0 CTGCTCTTCAACGCAAGTCGAACGCATCGAGCTTGGATGTACATTCACCTAGCCGGCCAG 300 consensus_3129#1 TCGCCCTGACGCGCGATCTGGCCG---AGAGC---GATG-------AGCTGGCCG--CGT 250 ** ** *** * * ** **** **** * ** **** * consensus_3129#0 CTGCCCGCACTGCTCTGGGCCACTAACTTCTACAACGTGCTCATTGCACTGTTCGTACCG 360 consensus_3129#1 CCGACC-TACCGGTCGGGGAGACCGTGTTCTTCGACTTTATCGGACTCGCGTTTGTGCAT 309 * * ** ** * ** *** ** **** * ** * ** *** ** * consensus_3129#0 ATCACGGGCCGATTTGGAGGGTCGCGCAATCCGGAAGTGTTTAT-CTCGCTGCTAGC-CG 418 consensus_3129#1 TACTCTGCCTCCAGTGGCCGTTTGATTAATCTGGCAGTGGTGGTACTTTCCCTTATCGTG 369 * * * * *** * * * **** ** **** * * ** * ** * * consensus_3129#0 CTGGCGGTACGCTTCTCTGCTGCAGCTATTTAATTCCATTCATTGCTCAGCTGCG--CAA 476 consensus_3129#1 CCTTTGATGTGCTTTGCCCGTGC-GCGCTTCGATGACGTTCTGCGGGAAGTTATCGTCGG 428 * * * **** * *** ** ** ** * *** * ** * * consensus_3129#0 AATGATGAATTTCACCGCAACTGTCAGCCATCACCGTGCTAACGCTTGTTGC----TGGC 532 consensus_3129#1 ATTGGTGGG---CACCGTGTTTGGGACCGTTTTCAGCATCATCGCTTGTACCACCATTGC 485 * ** ** ***** ** * * * * * * ******* * * ** consensus_3129#0 ATGCT--TTAAGCCCCTCTCGGGAATGCCGTATCGGGGATGAGAGTATGGGCCAN---CC 587 consensus_3129#1 GCGCCAGTTGGACTTTTTCGGAAAAAGCATGACCTGGTACACGAACACCCATCTGATCTT 545 ** ** * * * ** ** * * ** * ** * * consensus_3129#0 GGAACCGAACCCCCCCAGGGGAGNAACTACGTAACG------GCACACTTTTCCGGAGTT 641 consensus_3129#1 GGGACTGTACTGCTGCCCGGCACTACTGTCGCATTGTTTCGTGTACCTGTTTCTGACCAC 605 ** ** * ** * * ** * * ** * * * ** **** * consensus_3129#0 GTTCCACGATGA-----AGTTCGGCCTGTGACCAAGA-AGGCCACCGACACGCGGGGAAT 695 consensus_3129#1 TTTCTACACCAACAGTAAGAGCAATCTGTCGCTCGGTCAAATGACCCAGGCCCGGCTGGT 665 *** ** * ** * **** * * * *** * * *** * consensus_3129#0 GCATTTT-------- 702 consensus_3129#1 TGGTGTGAATGTGTT 680 * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||