These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3149#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence [CAGAATGGCCGAGGGTTACGCAACCACTCTTTCATATGATCTCTGTGGCGACTGTGGGAGCGCGCTGTGTGTGTGCGGGACCGAAAGAGACCTAGGAAGCTTCTCGTTTTATTATATTTAACACCTGCCGCACTAAATGAGCACGTGATGCTGATTATACTGCTCTGCATTTTCGGCACCACCAATGCCTGGTACGAAACGGGCCCCTGGAGCACGTCCACCCGGCGCTACTACGCCACGCCGGACCACCAGTGGGCCGAACCGCAGTTCGATCTGAGCGTTTCCCGCAACGTGACGGTGCGGGAAGGCGAAACCGCATTCCTTACGTGCCGGGTGGAAAATCTGGCCAAGTACAGCATCTCCTGGGTGCGGCACCACGATCTGCACATACTGGCCATCAACGCGGACACGGTTCACGTCGGACGAGCGGTTTCAGGCGCTGTACAACGACCAGACGGCCGAGTGGACGCTGAAGCTGAGACGGACGCGCCGGAAGGACACCGGCATCTACGAGGTGCCAGATATCGACCATGCCGGTAAAGAGCCTGCAGCTCTACCGTGATTGTGCTCGATGAGTCGC] [+] EMBL BX466625 [CAGAATGGCCGAGGGTTACGCAACCACTCTTTCATATGATCTCTGTGGCGACTGTGGGAGCGCGCTGTGTGTGTGCGGGACCGAAAGAGACCTAGGAAGCTTCTCGTTTTATTATATTTAACACCTGCCGCACTAAATGAGCACGTGATGCTGATTATACTGCTCTGCATTTTCGGCACCACCAATGCCTGGTACGAAACGGGCCCCTGGAGCACGTCCACCCGGCGCTACTACGCCACGCCGGACCACCAGTGGGCCGAACCGCAGTTCGATCTGAGCGTTTCCCGCAACGTGACGGTGCGGGAAGGCGAAACCGCATTCCTTACGTGCCGGGTGGAAAATCTGGCCAAGTACAGCATCTCCTGGGTGCGGCACCACGATCTGCACATACTGGCCATCAACGCGGACACGGTTCACGTCGGACGAGCGGTTTCAGGCGCTGTACAACGACCAGACGGCCGAGTGGACGCTGAAGCTGAGACGGACGCGCCGGAAGGACACCGGCATCTACGAGGTGCCAGATATCGACCATGCCGGTAAAGAGCCTGCAGCTCTACCGTGATTGTGCTCGATGAGTCGC] consensusID : consensus_3149#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 509 fasta sequence [AAACCGCGACAGTAGCGACAAGAGAGTGGGCCATTTTCACAGCATTTAATACCAATTTAACGTGTGTAAGCGTGTGCGTGTGTCTGTGCTTTTGGATGGAAATTCAACGTGAAAATTATGTGACCATGTGAAATAATTGCTCACGGGCCAGTGCCACGGGATCAACGATAATCACCAAAGCGGATCGTACGTTGACGCAACCACTCTTTCATATGATCTGTGGCGACTGTGGGAGTGCTGTGTGTGTGTATGTGCGGGACCGAAAAAGAGACCTAGGAAGCTTCTCGTTTTATTATATTTAACACCTGCCGCACTAAATGAGCACGTGATGCTTATNNATACTGCTCTGCATTTTCGGCACCACCAATGCCTGGTACGAAACGGGCCCCTGGAGCACGTCCACCCGGCGCTACTACGCCACCGCGGACCACCAGTGGGCCGAACCGCAGTTCGATCTGAGCGTNTCCCGCAACGTGACGGTGCGGGAAGGCGAAACCGCATTCCTTACG] [+] EMBL BX619791 [AAACCGCGACAGTAGCGACAAGAGAGTGGGCCATTTTCACAGCATTTAATACCAATTTAACGTGTGTAAGCGTGTGCGTGTGTCTGTGCTTTTGGATGGAAATTCAACGTGAAAATTATGTGACCATGTGAAATAATTGCTCACGGGCCAGTGCCACGGGATCAACGATAATCACCAAAGCGGATCGTACGTTGACGCAACCACTCTTTCATATGATCTGTGGCGACTGTGGGAGTGCTGTGTGTGTGTATGTGCGGGACCGAAAAAGAGACCTAGGAAGCTTCTCGTTTTATTATATTTAACACCTGCCGCACTAAATGAGCACGTGATGCTTATNNATACTGCTCTGCATTTTCGGCACCACCAATGCCTGGTACGAAACGGGCCCCTGGAGCACGTCCACCCGGCGCTACTACGCCACCGCGGACCACCAGTGGGCCGAACCGCAGTTCGATCTGAGCGTNTCCCGCAACGTGACGGTGCGGGAAGGCGAAACCGCATTCCTTACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3149#0 ------------------------------------------------------------ consensus_3149#1 AAACCGCGACAGTAGCGACAAGAGAGTGGGCCATTTTCACAGCATTTAATACCAATTTAA 60 consensus_3149#0 ------------------------------------------------------------ consensus_3149#1 CGTGTGTAAGCGTGTGCGTGTGTCTGTGCTTTTGGATGGAAATTCAACGTGAAAATTATG 120 consensus_3149#0 -------------------------------------------------------CAGAA 5 consensus_3149#1 TGACCATGTGAAATAATTGCTCACGGGCCAGTGCCACGGGATCAACGATAATCACCAAAG 180 ** * consensus_3149#0 TGG-CCGAGGGTT-ACGCAACCACTCTTTCATATGATCTCTGTGGCGACTGTGGGAGCGC 63 consensus_3149#1 CGGATCGTACGTTGACGCAACCACTCTTTCATATGATCT--GTGGCGACTGTGGGAGTGC 238 ** ** *** ************************* **************** ** consensus_3149#0 GCTGTGTGTGT----GCGGGACCGAAA--GAGACCTAGGAAGCTTCTCGTTTTATTATAT 117 consensus_3149#1 TGTGTGTGTGTATGTGCGGGACCGAAAAAGAGACCTAGGAAGCTTCTCGTTTTATTATAT 298 ********* ************ ******************************* consensus_3149#0 TTAACACCTGCCGCACTAAATGAGCACGTGATGCTGATTA-TACTGCTCTGCATTTTCGG 176 consensus_3149#1 TTAACACCTGCCGCACTAAATGAGCACGTGATGCTTATNNATACTGCTCTGCATTTTCGG 358 *********************************** ** ******************* consensus_3149#0 CACCACCAATGCCTGGTACGAAACGGGCCCCTGGAGCACGTCCACCCGGCGCTACTACGC 236 consensus_3149#1 CACCACCAATGCCTGGTACGAAACGGGCCCCTGGAGCACGTCCACCCGGCGCTACTACGC 418 ************************************************************ consensus_3149#0 CACGCCGGACCACCAGTGGGCCGAACCGCAGTTCGATCTGAGCGTTTCCCGCAACGTGAC 296 consensus_3149#1 CACCGCGGACCACCAGTGGGCCGAACCGCAGTTCGATCTGAGCGTNTCCCGCAACGTGAC 478 *** **************************************** ************** consensus_3149#0 GGTGCGGGAAGGCGAAACCGCATTCCTTACGTGCCGGGTGGAAAATCTGGCCAAGTACAG 356 consensus_3149#1 GGTGCGGGAAGGCGAAACCGCATTCCTTACG----------------------------- 509 ******************************* consensus_3149#0 CATCTCCTGGGTGCGGCACCACGATCTGCACATACTGGCCATCAACGCGGACACGGTTCA 416 consensus_3149#1 ------------------------------------------------------------ consensus_3149#0 CGTCGGACGAGCGGTTTCAGGCGCTGTACAACGACCAGACGGCCGAGTGGACGCTGAAGC 476 consensus_3149#1 ------------------------------------------------------------ consensus_3149#0 TGAGACGGACGCGCCGGAAGGACACCGGCATCTACGAGGTGCCAGATATCGACCATGCCG 536 consensus_3149#1 ------------------------------------------------------------ consensus_3149#0 GTAAAGAGCCTGCAGCTCTACCGTGATTGTGCTCGATGAGTCGC 580 consensus_3149#1 -------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||