These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3170#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 944 fasta sequence [TTCCAGGGCTTCACCAAGGACATCGAGGAAATCTACTGGAAGTGCAAAAGCAACGCCGACGGTAAGGTGGCCAACTACATCCCCCAGCTGTCGCGCGTCAATCCCGACTACTGGGGCGTGAGCGTGTGCACGATCGATGGGCAGCGCTTCTCGATCGGTGACACCTCGGTACCGTTCACGCTGCAAAGCTGCAGCAAGCCGCTAACGTACGCGATCGCGCTCGAGAAGCTGGGAGCGCAGGTGGTCCACCAGTACATTGGGCAGGAGCCGAGCGGCCGCAACTTCAACGAGCTGGTGCTGGACTACGAAAAGAAACCGCACAACCCAATGATCAATGCCGGGGCGATCCTCACCTGCTCCCTGCTCAAGACGCTCGTCCATCCGGAGATGACGCTGGCGGAAACGTTCGCACACGAGGACGTTGTAACGCTGCTGCGCCAGTTGGAGGAGAAGGTACAGAAGGCGCAAACGTGCGAACTAGCGAAACCGGATACAACTCCGACCAGGACAGCGATGCGTCCAGTGGCAAAGGGACGAAAGGTCCGGCCGGTTCACCGATGTTGCCCTAAAAACTACGCCCCAAATCACCTGCCCGTGAGGCAAAACGAAACCTACGACAATAATTACTGCACTGCGATACGGGGAAGGGAGTATCATCCGCCTCATGTGTGTACGGTTTGTTTTTAATGTATCCATCAGCAATTAGGAATATTCGATCGTTCGTGTACTCTTTCCAGCGTCATCATACTATATCATACTGTGCTTGCGTGTCTGTGTATAGTATGCATCGGTTTAATTAATGCATGTCAATTATTCTGTATCGATAGCTGTAACAAAACCAGTCAACTAAATAACTAACGTTTAATTCCTGCCAATCGAATCGAAACCAATAAAGCAAGCGACTTCGAAAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CNS09IFE [TTCCAGGGCTTCACCAAGGACATCGAGGAAATCTACTGGAAGTGCAAAAGCAACGCCGACGGTAAGGTGGCCAACTACATCCCCCAGCTGTCGCGCGTCAATCCCGACTACTGGGGCGTGAGCGTGTGCACGATCGATGGGCAGCGCTTCTCGATCGGTGACACCTCGGTACCGTTCACGCTGCAAAGCTGCAGCAAGCCGCTAACGTACGCGATCGCGCTCGAGAAGCTGGGAGCGCAGGTGGTCCACCAGTACATTGGGCAGGAGCCGAGCGGCCGCAACTTCAACGAGCTGGTGCTGGACTACGAAAAGAAACCGCACAACCCAATGATCAATGCCGGGGCGATCCTCACCTGCTCCCTGCTCAAGACGCTCGTCCATCCGGAGATGACGCTGGCGGAAACGTTCGCACACGAGGACGTTGTAACGCTGCTGCGCCAGTTGGAGGAGAAGGTACAGAAGGCGCAAACGTGCGAACTAGCGAAACCGGATACAACTCCGACCAGGACAGCGATGCGTCCAGTGGCAAAGGGACGAAAGGTCCGGCCGGTTCACCGATGTTGCCCTAAAAACTACGCCCCAAATCACCTGCCCGTGAGGCAAAACGAAACCTACGACAATAATTACTGCACTGCGATACGGGGAAGGGAGTATCATCCGCCTCATGTGTGTACGGTTTGTTTTTAATGTATCCATCAGCAATTAGGAATATTCGATCGTTCGTGTACTCTTTCCAGCGTCATCATACTATATCATACTGTGCTTGCGTGTCTGTGTATAGTATGCATCGGTTTAATTAATGCATGTCAATTATTCTGTATCGATAGCTGTAACAAAACCAGTCAACTAAATAACTAACGTTTAATTCCTGCCAATCGAATCGAAACCAATAAAGCAAGCGACTTCGAAAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_3170#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 783 fasta sequence [CCCGCATCCAGGAGCTGATGGACAATCTGAAGCGTGTGCACAAGCTGAACAACTACGAACACGGCTCACCGCACACCCAGCACCTGAACGAGGAAACCTTCAAAGCCGTTATCGCACCGAACATTGTGCTGATCGCGCGCGCATTCCGCCACCAATTCGTCATACCCGACTTCCAGGGCTTCACCAAGGACATCGAGGAAATCTACTGGAAGTGCAAAAGCAACGCCGACGGTAAGGTGGCCAACTACATCCCCCAGCTGTCGCGCGTCAATCCCGACTACTGGGGCGTGAGCGTATGCACGATCGATGGGCAGCGCTTCTCGATCGGTGACACCTCGGTACCGTTCACGCTGCAAAGCTGCAGCAAGCCGCTAACGTACGCGATCGCGCTCGAGAAGCTGGGAGCGCAGGTGGTCCACCAGTACATTGGGCAGGAGCCGAGCGGCCGCAACTTCAACGAGCTGGTGCTGGACTACGAAAAGAAACCGCACAACCCAATGATCAATGCCGGGGCGATCCTCACCTGCTCCCTGCTCAAGACGCTCGTCCATCCGGAGATGACGCTGGCGGAGAAGTTCGACTACGCGCAGACCTGGTTCAGCCGGATGGCGGGCAACGAGCCGCTCGGCTTCAACAATGCCGTGTTCCTGTCCGAGCGGGAGGCGGCCGATCGGAACTACGCGCTCGGGTTTTACATGCGCGAGCACNAATGCTACCCGGAGAANGCGAACCTGCGCGAGTGCATGGACTTTTACTTTCAGATCTGCTCGATGGANGGCACCT] [+] EMBL BX627073 [CCCGCATCCAGGAGCTGATGGACAATCTGAAGCGTGTGCACAAGCTGAACAACTACGAACACGGCTCACCGCACACCCAGCACCTGAACGAGGAAACCTTCAAAGCCGTTATCGCACCGAACATTGTGCTGATCGCGCGCGCATTCCGCCACCAATTCGTCATACCCGACTTCCAGGGCTTCACCAAGGACATCGAGGAAATCTACTGGAAGTGCAAAAGCAACGCCGACGGTAAGGTGGCCAACTACATCCCCCAGCTGTCGCGCGTCAATCCCGACTACTGGGGCGTGAGCGTATGCACGATCGATGGGCAGCGCTTCTCGATCGGTGACACCTCGGTACCGTTCACGCTGCAAAGCTGCAGCAAGCCGCTAACGTACGCGATCGCGCTCGAGAAGCTGGGAGCGCAGGTGGTCCACCAGTACATTGGGCAGGAGCCGAGCGGCCGCAACTTCAACGAGCTGGTGCTGGACTACGAAAAGAAACCGCACAACCCAATGATCAATGCCGGGGCGATCCTCACCTGCTCCCTGCTCAAGACGCTCGTCCATCCGGAGATGACGCTGGCGGAGAAGTTCGACTACGCGCAGACCTGGTTCAGCCGGATGGCGGGCAACGAGCCGCTCGGCTTCAACAATGCCGTGTTCCTGTCCGAGCGGGAGGCGGCCGATCGGAACTACGCGCTCGGGTTTTACATGCGCGAGCACNAATGCTACCCGGAGAANGCGAACCTGCGCGAGTGCATGGACTTTTACTTTCAGATCTGCTCGATGGANGGCACCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3170#0 ------------------------------------------------------------ consensus_3170#1 CCCGCATCCAGGAGCTGATGGACAATCTGAAGCGTGTGCACAAGCTGAACAACTACGAAC 60 consensus_3170#0 ------------------------------------------------------------ consensus_3170#1 ACGGCTCACCGCACACCCAGCACCTGAACGAGGAAACCTTCAAAGCCGTTATCGCACCGA 120 consensus_3170#0 --------------------------------------------------TTCCAGGGCT 10 consensus_3170#1 ACATTGTGCTGATCGCGCGCGCATTCCGCCACCAATTCGTCATACCCGACTTCCAGGGCT 180 ********** consensus_3170#0 TCACCAAGGACATCGAGGAAATCTACTGGAAGTGCAAAAGCAACGCCGACGGTAAGGTGG 70 consensus_3170#1 TCACCAAGGACATCGAGGAAATCTACTGGAAGTGCAAAAGCAACGCCGACGGTAAGGTGG 240 ************************************************************ consensus_3170#0 CCAACTACATCCCCCAGCTGTCGCGCGTCAATCCCGACTACTGGGGCGTGAGCGTGTGCA 130 consensus_3170#1 CCAACTACATCCCCCAGCTGTCGCGCGTCAATCCCGACTACTGGGGCGTGAGCGTATGCA 300 ******************************************************* **** consensus_3170#0 CGATCGATGGGCAGCGCTTCTCGATCGGTGACACCTCGGTACCGTTCACGCTGCAAAGCT 190 consensus_3170#1 CGATCGATGGGCAGCGCTTCTCGATCGGTGACACCTCGGTACCGTTCACGCTGCAAAGCT 360 ************************************************************ consensus_3170#0 GCAGCAAGCCGCTAACGTACGCGATCGCGCTCGAGAAGCTGGGAGCGCAGGTGGTCCACC 250 consensus_3170#1 GCAGCAAGCCGCTAACGTACGCGATCGCGCTCGAGAAGCTGGGAGCGCAGGTGGTCCACC 420 ************************************************************ consensus_3170#0 AGTACATTGGGCAGGAGCCGAGCGGCCGCAACTTCAACGAGCTGGTGCTGGACTACGAAA 310 consensus_3170#1 AGTACATTGGGCAGGAGCCGAGCGGCCGCAACTTCAACGAGCTGGTGCTGGACTACGAAA 480 ************************************************************ consensus_3170#0 AGAAACCGCACAACCCAATGATCAATGCCGGGGCGATCCTCACCTGCTCCCTGCTCAAGA 370 consensus_3170#1 AGAAACCGCACAACCCAATGATCAATGCCGGGGCGATCCTCACCTGCTCCCTGCTCAAGA 540 ************************************************************ consensus_3170#0 CGCTCGTCCATCCGGAGATGACGCTGGCGGAAACGTTCGCACACGAGGACGTTGTAACGC 430 consensus_3170#1 CGCTCGTCCATCCGGAGATGACGCTGGCGGAGAAGTTCGACTACGCGCA------GACCT 594 ******************************* * ***** *** * * ** consensus_3170#0 TGCTGCGCCAGTTGGAGGAGAAGGTACAGAAGGCGCAAACGTGCGAACTAGCGAAACCGG 490 consensus_3170#1 GGTTCAGCCGGATGGCGGGCAACG------AGCCGC-----TCGGCTTCAACAATGCCGT 643 * * *** * *** ** ** * ** *** * * * * * *** consensus_3170#0 ATACAACTCCGACCAGGACAGCGATGCGTCCAGTGGCAAAGGGACGAAAGGTCCGGCCGG 550 consensus_3170#1 GTTCCTGTCCGAGCGGGAG------GCGGCCGATCG-----GAACTACGCGCTCGG--GT 690 * * ***** * *** *** ** * * * ** * * *** * consensus_3170#0 TTCACCGATGTTGCCCTAAAAACTACGCCCCAAATCACCTGCCCGTGAGGCAAAACGAAA 610 consensus_3170#1 TTTACATGCGCGAGCACNAATGCTAC-CCGGAGAANGCGAACCTGCGCGAGTGCATGGAC 749 ** ** * * ** **** ** * * * ** * * * * * * consensus_3170#0 CCTACGACAATAATTACTGCACTGCGATACGGGGAAGGGAGTATCATCCGCCTCATGTGT 670 consensus_3170#1 TTT-------TACTTTCAGATCTGCT---CGATGGANGGCACCT---------------- 783 * ** ** * * **** ** * * ** * consensus_3170#0 GTACGGTTTGTTTTTAATGTATCCATCAGCAATTAGGAATATTCGATCGTTCGTGTACTC 730 consensus_3170#1 ------------------------------------------------------------ consensus_3170#0 TTTCCAGCGTCATCATACTATATCATACTGTGCTTGCGTGTCTGTGTATAGTATGCATCG 790 consensus_3170#1 ------------------------------------------------------------ consensus_3170#0 GTTTAATTAATGCATGTCAATTATTCTGTATCGATAGCTGTAACAAAACCAGTCAACTAA 850 consensus_3170#1 ------------------------------------------------------------ consensus_3170#0 ATAACTAACGTTTAATTCCTGCCAATCGAATCGAAACCAATAAAGCAAGCGACTTCGAAA 910 consensus_3170#1 ------------------------------------------------------------ consensus_3170#0 GGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 944 consensus_3170#1 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||