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Anopheles gambiae
cluster # 3173 cluster # 3173       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3173#0 length = 1052 sequences # 2  
consensus_3173#1 length = 493 sequences # 1  

consensusID : consensus_3173#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1052
fasta sequence
                              [TCGGCGCCGACCATCGACGGAGTGTTCATGACAGCCGATCCGATGACCATGCTGCGTGAGGCAAACCTCGAAGGAATTGACATACTGGTCGGCAGCAACCGGGACGAAGGCACCTACTTTCTGCTGTACGACTTTATCGACTACTTTGAGAAGGATGCGGCCACCTCGCTGCCGAGGGACAAGTTTTTGGAAATCATGAACACCATCTTCAACAAAGCGTCCGAGCCGGAACGCGAGGCAATCATCTTTCAGTACACGGGATGGGAGAGTGGCAACGATGGGTACCAGAACCAGCATCAGGTCGGGCGGGCTGTCGGGGACCACTTCTTCATCTGTCCGACGAACGAGTTCGCGCTCGGGCTGACGGAGCGTGGCGCCTCGGTGCACTATTACTACTTCACTCACCGTACCAGCACCTCTCTGTGGGGCGAATGGATGGGCGTGCTGCACGGTGACGAGGTCGAGTACATCTTCGGCCAGCCGATGAACGCGTCGCTGCAGTACCGGCAGCGGGAGCGGGACCTGAGCCGCCGCATGGTACTGTCGGTGAGCGAGTTTGCACGCACCGGCAATCCGGCCCTCGAGGGCGAACACTGGCCACTGTACACGAGGGAGAACCCGATCTACTTTATCTTCAACGCGGAGGGCGAGGACGATCTGCGGGGCGAAAAGTATGGNCGCGGACCGATGGCGACCTCGTGCGCCTTCTGGAACGACTTCCTACCAAGACTGCGGGCCTGGTCGGTGCCCTTGAAGGATCCGTGCAAGCTCGACGACCACACCTCGATAGCCAGCACCGCCCGGGCAGCGCCCACCGTTGCGCTGCTGATCGCGCTCAGTCTGGCGGTGGCGAGATTGGTAGCAGCTTAAGCTGGCGCGCCCAGCACAGCATCCACCCATTATCCCCGTTCAACCCCCCGCCCAATACCCGTACACATCTTCCCCATCCATTCCCAAACTCTCTAGTTCGTTGCACCCCGGATGGAAACAGCCTATTTATCCATGCTTGACCCCGCGAATAGGCCGATCGGCATCATCCGCAAGACAGCGGA]

[+] EMBL BX621591             [TCGGCGCCGACCATCGACGGAGTGTTCATGACAGCCGATCCGATGACCATGCTGCGTGAGGCAAACCTCGAAGGAATTGACATACTGGTCGGCAGCAACCGGGACGAAGGCACCTACTTTCTGCTGTACGACTTTATCGACTACTTTGAGAAGGATGCGGCCACCTCGCTGCCGAGGGACAAGTTTTTGGAAATCATGAACACCATCTTCAACAAAGCGTCCGAGCCGGAACGCGAGGCAATCATCTTTCAGTACACGGGATGGGAGAGTGGCAACGATGGGTACCAGAACCAGCATCAGGTCGGGCGGGCTGTCGGGGACCACTTCTTCATCTGTCCGACGAACGAGTTCGCGCTCGGGCTGACGGAGCGTGGCGCCTCGGTGCACTATTACTACTTCACTCACCGTACCAGCACCTCTCTGTGGGGCGAATGGATGGGCGTGCTGCACGGTGACGAGGTCGAGTACATCTTCGGCCAGCCGATGAACGCGTCGCTGCAGTACCGGCAGCGGGAGCGGGACCTGAGCCGCCGCATGGTACTGTCGGTGAGCGAGTTTGCACGCACCGGCAATCCGGCCCTCGAGGGCGAACACTGGCCACTGTACACGAGGGAGAACCCGATCTACTTTATCTTCAACGCGGAGGGCGAGGACGATCTGCGGGGCGAAAAGTATGGNCGCGGACCGATGGCGACCTCGTGCGCCTTCTGGAACGACTTCCTACC                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BM632651             [                                                                                                                                                                                                                                                                                                                                                                                                                          ccGCACCTCTCTGTGGGGCGAATGGATGGGCGTGCTGCACGGTGACGAGGTCGAGTACATCTTCGGCCAGCCGATGAACGCGTCGCTGCAGTACCGGCAGCGGGAGCGGGACCTGAGCCGCCGCATGGTACTGTCGGTGAGCGAGTTTGCACGCACCGGCAATCCGGCCCTCGAGGGCGAACACTGGCCACTGTACACGAGGGAGAACCCGATCTACTTTATCTTCAACGCGGAGGGCGAGGACGATCTGCGGGGCGAAAAGTATGGCCGCGGACCGATGGCGACCTCGTGCGCCTTCTGGAACGACTTCCTACCAAGACTGCGGGCCTGGTCGGTGCCCTTGAAGGATCCGTGCAAGCTCGACGACCACACCTCGATAGCCAGCACCGCCCGGGCAGCGCCCACCGTTGCGCTGCTGATCGCGCTCAGTCTGGCGGTGGCGAGATTGGTAGCAGCTTAAGCTGGCGCGCCCAGCACAGCATCCACCCATTATCCCCGTTCAACCCCCCGCCCAATACCCGTACACATCTTCCCCATCCATTCCCAAACTCTCTAGTTCGTTGCACCCCGGATGGAAACAGCCTATTTATCCATGCTTGACCCCGCGAATAGGCCGATCGGCATCATCCGCAAGACAGCGGA]


>consensus_3173#0 TCGGCGCCGACCATCGACGGAGTGTTCATGACAGCCGATCCGATGACCATGCTGCGTGAG GCAAACCTCGAAGGAATTGACATACTGGTCGGCAGCAACCGGGACGAAGGCACCTACTTT CTGCTGTACGACTTTATCGACTACTTTGAGAAGGATGCGGCCACCTCGCTGCCGAGGGAC AAGTTTTTGGAAATCATGAACACCATCTTCAACAAAGCGTCCGAGCCGGAACGCGAGGCA ATCATCTTTCAGTACACGGGATGGGAGAGTGGCAACGATGGGTACCAGAACCAGCATCAG GTCGGGCGGGCTGTCGGGGACCACTTCTTCATCTGTCCGACGAACGAGTTCGCGCTCGGG CTGACGGAGCGTGGCGCCTCGGTGCACTATTACTACTTCACTCACCGTACCAGCACCTCT CTGTGGGGCGAATGGATGGGCGTGCTGCACGGTGACGAGGTCGAGTACATCTTCGGCCAG CCGATGAACGCGTCGCTGCAGTACCGGCAGCGGGAGCGGGACCTGAGCCGCCGCATGGTA CTGTCGGTGAGCGAGTTTGCACGCACCGGCAATCCGGCCCTCGAGGGCGAACACTGGCCA CTGTACACGAGGGAGAACCCGATCTACTTTATCTTCAACGCGGAGGGCGAGGACGATCTG CGGGGCGAAAAGTATGGNCGCGGACCGATGGCGACCTCGTGCGCCTTCTGGAACGACTTC CTACCAAGACTGCGGGCCTGGTCGGTGCCCTTGAAGGATCCGTGCAAGCTCGACGACCAC ACCTCGATAGCCAGCACCGCCCGGGCAGCGCCCACCGTTGCGCTGCTGATCGCGCTCAGT CTGGCGGTGGCGAGATTGGTAGCAGCTTAAGCTGGCGCGCCCAGCACAGCATCCACCCAT TATCCCCGTTCAACCCCCCGCCCAATACCCGTACACATCTTCCCCATCCATTCCCAAACT CTCTAGTTCGTTGCACCCCGGATGGAAACAGCCTATTTATCCATGCTTGACCCCGCGAAT AGGCCGATCGGCATCATCCGCAAGACAGCGGA



consensusID : consensus_3173#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 493
fasta sequence
                              [GCGAGATCGGCACGAGGCGAGGTGCGAACACTGGCCACTGTACACGAGGGAGAACCCGATCTACTTTATNGTTCAACGCGGAGGGCGAGGACGATCTGCGGGGCGAAAAGTATGGCCGCGGACCGATGGCGACCTCGTGCGCCTTCTGGAACGACTTCCTACCAAGACTGCGGGCCTGGTCGGTGCCCTTGAAGGATCCGTGCAAGCTCGACGACCACACCTCGATAGCCAGCACCGCCCGGGCAGCGCCCACCGTTGCGCTGCTGATCGCGCTCAGTCTGGCGGTGGCGAGATTGGTAGCAGCTTAAGCTGGCGCGCCCAGCACAGCATCCACCCATTATCCCGTTCAACCCCCCGCCCAATACCCGTACACATCTTCCCCATCCATTCCCCAAACTCTCTAGTTCGTTGCACCCCNGGATGGAAACAGCCTATTTATCCATGCTTGACCCCGCGATAGGCCGATCGGTATCATCCGTAAGACAGCGGAAAG]

[+] EMBL BX619729             [GCGAGATCGGCACGAGGCGAGGTGCGAACACTGGCCACTGTACACGAGGGAGAACCCGATCTACTTTATNGTTCAACGCGGAGGGCGAGGACGATCTGCGGGGCGAAAAGTATGGCCGCGGACCGATGGCGACCTCGTGCGCCTTCTGGAACGACTTCCTACCAAGACTGCGGGCCTGGTCGGTGCCCTTGAAGGATCCGTGCAAGCTCGACGACCACACCTCGATAGCCAGCACCGCCCGGGCAGCGCCCACCGTTGCGCTGCTGATCGCGCTCAGTCTGGCGGTGGCGAGATTGGTAGCAGCTTAAGCTGGCGCGCCCAGCACAGCATCCACCCATTATCCCGTTCAACCCCCCGCCCAATACCCGTACACATCTTCCCCATCCATTCCCCAAACTCTCTAGTTCGTTGCACCCCNGGATGGAAACAGCCTATTTATCCATGCTTGACCCCGCGATAGGCCGATCGGTATCATCCGTAAGACAGCGGAAAG]


>consensus_3173#1 GCGAGATCGGCACGAGGCGAGGTGCGAACACTGGCCACTGTACACGAGGGAGAACCCGAT CTACTTTATNGTTCAACGCGGAGGGCGAGGACGATCTGCGGGGCGAAAAGTATGGCCGCG GACCGATGGCGACCTCGTGCGCCTTCTGGAACGACTTCCTACCAAGACTGCGGGCCTGGT CGGTGCCCTTGAAGGATCCGTGCAAGCTCGACGACCACACCTCGATAGCCAGCACCGCCC GGGCAGCGCCCACCGTTGCGCTGCTGATCGCGCTCAGTCTGGCGGTGGCGAGATTGGTAG CAGCTTAAGCTGGCGCGCCCAGCACAGCATCCACCCATTATCCCGTTCAACCCCCCGCCC AATACCCGTACACATCTTCCCCATCCATTCCCCAAACTCTCTAGTTCGTTGCACCCCNGG ATGGAAACAGCCTATTTATCCATGCTTGACCCCGCGATAGGCCGATCGGTATCATCCGTA AGACAGCGGAAAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3173#0      TCGGCGCCGACCATCGACGGAGTGTTCATGACAGCCGATCCGATGACCATGCTGCGTGAG 60
consensus_3173#1      ------------------------------------------------------------
                                                                                  

consensus_3173#0      GCAAACCTCGAAGGAATTGACATACTGGTCGGCAGCAACCGGGACGAAGGCACCTACTTT 120
consensus_3173#1      ------------------------------------------------------------
                                                                                  

consensus_3173#0      CTGCTGTACGACTTTATCGACTACTTTGAGAAGGATGCGGCCACCTCGCTGCCGAGGGAC 180
consensus_3173#1      ------------------------------------------------------------
                                                                                  

consensus_3173#0      AAGTTTTTGGAAATCATGAACACCATCTTCAACAAAGCGTCCGAGCCGGAACGCGAGGCA 240
consensus_3173#1      ------------------------------------------------------------
                                                                                  

consensus_3173#0      ATCATCTTTCAGTACACGGGATGGGAGAGTGGCAACGATGGGTACCAGAACCAGCATCAG 300
consensus_3173#1      ------------------------------------------------------------
                                                                                  

consensus_3173#0      GTCGGGCGGGCTGTCGGGGACCACTTCTTCATCTGTCCGACGAACGAGTTCGCGCTCGGG 360
consensus_3173#1      ------------------------------------------------------------
                                                                                  

consensus_3173#0      CTGACGGAGCGTGGCGCCTCGGTGCACTATTACTACTTCACTCACCGTACCAGCACCTCT 420
consensus_3173#1      ------------------------------------------------------------
                                                                                  

consensus_3173#0      CTGTGGGGCGAATGGATGGGCGTGCTGCACGGTGACGAGGTCGAGTACATCTTCGGCCAG 480
consensus_3173#1      ------------------------------------------------------------
                                                                                  

consensus_3173#0      CCGATGAACGCGTCGCTGCAGTACCGGCAGCGGGAGCGGGACCTGAGCCGCCGCATGGTA 540
consensus_3173#1      ------------------------------------------------------------
                                                                                  

consensus_3173#0      CTGTCGGTGAGCGAGTTTGCACGCACCGGCAATCCGGCCCTCGAGGGCGAACACTGGCCA 600
consensus_3173#1      ----------------------GCGAGATCGGCACGAGGCG-AGGTGCGAACACTGGCCA 37
                                            **     *    **   *    * **************

consensus_3173#0      CTGTACACGAGGGAGAACCCGATCTACTTTATC-TTCAACGCGGAGGGCGAGGACGATCT 659
consensus_3173#1      CTGTACACGAGGGAGAACCCGATCTACTTTATNGTTCAACGCGGAGGGCGAGGACGATCT 97
                      ********************************  **************************

consensus_3173#0      GCGGGGCGAAAAGTATGGNCGCGGACCGATGGCGACCTCGTGCGCCTTCTGGAACGACTT 719
consensus_3173#1      GCGGGGCGAAAAGTATGGCCGCGGACCGATGGCGACCTCGTGCGCCTTCTGGAACGACTT 157
                      ****************** *****************************************

consensus_3173#0      CCTACCAAGACTGCGGGCCTGGTCGGTGCCCTTGAAGGATCCGTGCAAGCTCGACGACCA 779
consensus_3173#1      CCTACCAAGACTGCGGGCCTGGTCGGTGCCCTTGAAGGATCCGTGCAAGCTCGACGACCA 217
                      ************************************************************

consensus_3173#0      CACCTCGATAGCCAGCACCGCCCGGGCAGCGCCCACCGTTGCGCTGCTGATCGCGCTCAG 839
consensus_3173#1      CACCTCGATAGCCAGCACCGCCCGGGCAGCGCCCACCGTTGCGCTGCTGATCGCGCTCAG 277
                      ************************************************************

consensus_3173#0      TCTGGCGGTGGCGAGATTGGTAGCAGCTTAAGCTGGCGCGCCCAGCACAGCATCCACCCA 899
consensus_3173#1      TCTGGCGGTGGCGAGATTGGTAGCAGCTTAAGCTGGCGCGCCCAGCACAGCATCCACCCA 337
                      ************************************************************

consensus_3173#0      TTATCCCCGTTCAACCCCCCGCCCAATACCCGTACACATCTTCCCCATCCATTCCC-AAA 958
consensus_3173#1      TTATCCC-GTTCAACCCCCCGCCCAATACCCGTACACATCTTCCCCATCCATTCCCCAAA 396
                      ******* ************************************************ ***

consensus_3173#0      CTCTCTAGTTCGTTGCACCCCGG-ATGGAAACAGCCTATTTATCCATGCTTGACCCCGCG 1017
consensus_3173#1      CTCTCTAGTTCGTTGCACCCCNGGATGGAAACAGCCTATTTATCCATGCTTGACCCCGCG 456
                      ********************* * ************************************

consensus_3173#0      AATAGGCCGATCGGCATCATCCGCAAGACAGCGGA--- 1052
consensus_3173#1      A-TAGGCCGATCGGTATCATCCGTAAGACAGCGGAAAG 493
                      * ************ ******** ***********   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)