These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3174#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 793 fasta sequence [GAATCGGCNACGAGGCATTTAGTTAGACCGTTCGCATTCATCCCAGTTTCTACACTTGTTATCACCTAGGCATAGCGGTAGCACCATCGTCCTAGCAACCTTTAATTACAAACGCTAACACAAGCACAAAGCATGGCGGTTGGAGGGCGTGTTACAGGTCGTCTTGGTTACGGGAACGGGTACTCCGATGGGCGTTCTTACGCAGGAATCAACGAAGAAATTATTGTACGTGAGCATAGGGAATGGGAATCATCATTGCCATTCTGATTTGCATCGCGCTGTGCTACATTGCTCGGGAGAATTGTAAAAATAAGCGCGAATATTACATTACGGCCTAAACATGGGGTGATTCTGCCCAGGCGGGGCGGCGGAGTTTACCCCGATCATGTGTNNGTTTACAGTTAACTTTTATCTATTGCTTTATATTCTGCTGTTTTTACGCTCAATACATGGTCAACCACGGTTCCAGGCTCGGTGCAGGGCTCGAGCTACACACAAAGAAAGTAATACCGGTCCGGAACTCCGTTCCGGTCGGAAAGTAAACTCGTGTTAACGGAAAAGTCTGTTTGTTGCAAAACAATAAGTACATAATACGTATATGTTCCTTTTATACATTATACACAGTTTGTGAAATGTAGACGTCTATTTTGAAAGTTATAATGAATATATTAATGTATACAAACAGCTACGAGAAATGGCAATGGAAATGCAATGTTTGGAGTAGCTTAAACTCTCTAGTTTGTAAATCGATCGTCATGGATCGATGGCTGAAGGATTACCAAATGTACTGCGT] [+] EMBL BX468594 [GAATCGGCNACGAGGCATTTAGTTAGACCGTTCGCATTCATCCCAGTTTCTACACTTGTTATCACCTAGGCATAGCGGTAGCACCATCGTCCTAGCAACCTTTAATTACAAACGCTAACACAAGCACAAAGCATGGCGGTTGGAGGGCGTGTTACAGGTCGTCTTGGTTACGGGAACGGGTACTCCGATGGGCGTTCTTACGCAGGAATCAACGAAGAAATTATTGTACGTGAGCATAGGGAATGGGAATCATCATTGCCATTCTGATTTGCATCGCGCTGTGCTACATTGCTCGGGAGAATTGTAAAAATAAGCGCGAATATTACATTACGGCCTAAACATGGGGTGATTCTGCCCAGGCGGGGCGGCGGAGTTTACCCCGATCATGTGTNNGTTTACAGTTAACTTTTATCTATTGCTTTATATTCTGCTGTTTTTACGCTCAATACATGGTCAACCACGGTTCCAGGCTCGGTGCAGGGCTCGAGCTACACACAAAGAAAGTAATACCGGTCCGGAACTCCGTTCCGGTCGGAAAGTAAACTCGTGTTAACGGAAAAGTCTGTTTGTTGCAAAACAATAAGTACATAATACGTATATGTTCCTTTTATACATTATACACAGTTTGTGAAATGTAGACGTCTATTTTGAAAGTTATAATGAATATATTAATGTATACAAACAGCTACGAGAAATGGCAATGGAAATGCAATGTTTGGAGTAGCTTAAACTCTCTAGTTTGTAAATCGATCGTCATGGATCGATGGCTGAAGGATTACCAAATGTACTGCGT] consensusID : consensus_3174#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 749 fasta sequence [GCTGTAGTGTATTTGTTATGTAGTGCATTTGTTAGACCGTTCGCATTCATCCCAGTTTCTACACTTGTTATCACCTAGGCATAGCGGTAGCACCATCGTCCTAGCAACCTTTAATTACAAACGCTAACACAAGCACAAAGCATGGCGGTTGGAGGGCGTGTTACAGGTCGTCTTGGTTACGGGAACGGGTACTCCGATGGGCGTTCTTACGCAGGAATCAACGAAGAAATTATGTACGTGAGCATAGGAATGGGAATCATCATTGCCATTCTGATTTGCATCGCGCTGTGCTACATTGCTCGGGAGAATTGTAAAAATAAGCGCGAATATTACATTACGGCCTAAACATGGGGTGATTCCGGCCCAGGCAGGGCGGCGGAGTTTACCCTGATCATGTGTTGTTTACAGTTAACTTTTATCTATTGCTTTATATTCTGCTGTTTTACGCTCAATACATGGTCAACCACGGTCCAGGCTCGGTGCAGGACTCGAGCTACACACAAAGAAAGTAATACCGGTCCGGAACTCCGTTCTGATCGGAAAGTAAACTCGTGTTAACGGAAAAGTCTGTTTGTTGCAAAACAATAAGTACATAATACGTATATGTTCCTTTTATACATTATACACAGTTTGTGGAAATGTAGACGTCTATTTTGAAAGTTATAATGAATATATTAATGTATACAAACAGCTACGAGAAATGGATGGAAATGCAATGTTTGGAGTAGCTAAACTCTCTAGTTTGTAAA] [+] EMBL BX615117 [GCTGTAGTGTATTTGTTATGTAGTGCATTTGTTAGACCGTTCGCATTCATCCCAGTTTCTACACTTGTTATCACCTAGGCATAGCGGTAGCACCATCGTCCTAGCAACCTTTAATTACAAACGCTAACACAAGCACAAAGCATGGCGGTTGGAGGGCGTGTTACAGGTCGTCTTGGTTACGGGAACGGGTACTCCGATGGGCGTTCTTACGCAGGAATCAACGAAGAAATTATGTACGTGAGCATAGGAATGGGAATCATCATTGCCATTCTGATTTGCATCGCGCTGTGCTACATTGCTCGGGAGAATTGTAAAAATAAGCGCGAATATTACATTACGGCCTAAACATGGGGTGATTCCGGCCCAGGCAGGGCGGCGGAGTTTACCCTGATCATGTGTTGTTTACAGTTAACTTTTATCTATTGCTTTATATTCTGCTGTTTTACGCTCAATACATGGTCAACCACGGTCCAGGCTCGGTGCAGGACTCGAGCTACACACAAAGAAAGTAATACCGGTCCGGAACTCCGTTCTGATCGGAAAGTAAACTCGTGTTAACGGAAAAGTCTGTTTGTTGCAAAACAATAAGTACATA ] [+] EMBL BM632646 [ ccgGTGCATTTGTTATGTAGTGCATTTGTTAGACCGTTCGCATTCATCCCAGTTTCTACACTTGTTATCACCTAGGCATAGCGGTAGCACCATCGTCCTAGCAACCTTTAATTACAAACGCTAACACAAGCACAAAGCATGGCGGTTGGAGGGCGTGTTACAGGTCGTCTTGGTTACGGGAACGGGTACTCCGATGGGCGTTCTTACGCAGGAATCAACGAAGAAATTATGTACGTGAGCATAGGAATGGGAATCATCATTGCCATTCTGATTTGCATCGCGCTGTGCTACATTGCTCGGGAGAATTGTAAAAATAAGCGCGAATATTACATTACGGCCTAAACATGGGGTGATTCCGGCCCAGGCAGGGCGGCGGAGTTTACCCTGATCATGTGTTGTTTACAGTTAACTTTTATCTATTGCTTTATATTCTGCTGTTTTACGCTCAATACATGGTCAACCACGGTCCAGGCTCGGTGCAGGACTCGAGCTACACACAAAGAAAGTAATACCGGTCCGGAACTCCGTTCTGATCGGAAAGTAAACTCGTGTTAACGGAAAAGTCTGTTTGTTGCAAAACAATAAGTACATAATACGTATATGTTCCTTTTATACATTATACACAGTTTGTGGAAATGTAGACGTCTATTTTGAAAGTTATAATGAATATATTAATGTATACAAACAGCTACGAGAAATGGATGGAAATGCAATGTTTGGAGTAGCTAAACTCTCTAGTTTGTAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3174#0 --------GAATCGGCNACGAGGCAT-TTAGTTAGACCGTTCGCATTCATCCCAGTTTCT 51 consensus_3174#1 GCTGTAGTGTATTTGTTATGTAGTGCATTTGTTAGACCGTTCGCATTCATCCCAGTTTCT 60 * ** * * * * ** ****************************** consensus_3174#0 ACACTTGTTATCACCTAGGCATAGCGGTAGCACCATCGTCCTAGCAACCTTTAATTACAA 111 consensus_3174#1 ACACTTGTTATCACCTAGGCATAGCGGTAGCACCATCGTCCTAGCAACCTTTAATTACAA 120 ************************************************************ consensus_3174#0 ACGCTAACACAAGCACAAAGCATGGCGGTTGGAGGGCGTGTTACAGGTCGTCTTGGTTAC 171 consensus_3174#1 ACGCTAACACAAGCACAAAGCATGGCGGTTGGAGGGCGTGTTACAGGTCGTCTTGGTTAC 180 ************************************************************ consensus_3174#0 GGGAACGGGTACTCCGATGGGCGTTCTTACGCAGGAATCAACGAAGAAATTATTGTACGT 231 consensus_3174#1 GGGAACGGGTACTCCGATGGGCGTTCTTACGCAGGAATCAACGAAGAAATTAT-GTACGT 239 ***************************************************** ****** consensus_3174#0 GAGCATAGGGAATGGGAATCATCATTGCCATTCTGATTTGCATCGCGCTGTGCTACATTG 291 consensus_3174#1 GAGCATAGG-AATGGGAATCATCATTGCCATTCTGATTTGCATCGCGCTGTGCTACATTG 298 ********* ************************************************** consensus_3174#0 CTCGGGAGAATTGTAAAAATAAGCGCGAATATTACATTACGGCCTAAACATGGGGTGATT 351 consensus_3174#1 CTCGGGAGAATTGTAAAAATAAGCGCGAATATTACATTACGGCCTAAACATGGGGTGATT 358 ************************************************************ consensus_3174#0 CTG-CCCAGGCGGGGCGGCGGAGTTTACCCCGATCATGTGTNNGTTTACAGTTAACTTTT 410 consensus_3174#1 CCGGCCCAGGCAGGGCGGCGGAGTTTACCCTGATCATGTGTTG-TTTACAGTTAACTTTT 417 * * ******* ****************** ********** **************** consensus_3174#0 ATCTATTGCTTTATATTCTGCTGTTTTTACGCTCAATACATGGTCAACCACGGTTCCAGG 470 consensus_3174#1 ATCTATTGCTTTATATTCTGCTGTTTT-ACGCTCAATACATGGTCAACCACGGT-CCAGG 475 *************************** ************************** ***** consensus_3174#0 CTCGGTGCAGGGCTCGAGCTACACACAAAGAAAGTAATACCGGTCCGGAACTCCGTTCCG 530 consensus_3174#1 CTCGGTGCAGGACTCGAGCTACACACAAAGAAAGTAATACCGGTCCGGAACTCCGTTCTG 535 *********** ********************************************** * consensus_3174#0 GTCGGAAAGTAAACTCGTGTTAACGGAAAAGTCTGTTTGTTGCAAAACAATAAGTACATA 590 consensus_3174#1 ATCGGAAAGTAAACTCGTGTTAACGGAAAAGTCTGTTTGTTGCAAAACAATAAGTACATA 595 *********************************************************** consensus_3174#0 ATACGTATATGTTCCTTTTATACATTATACACAGTTTGTG-AAATGTAGACGTCTATTTT 649 consensus_3174#1 ATACGTATATGTTCCTTTTATACATTATACACAGTTTGTGGAAATGTAGACGTCTATTTT 655 **************************************** ******************* consensus_3174#0 GAAAGTTATAATGAATATATTAATGTATACAAACAGCTACGAGAAATGGCAATGGAAATG 709 consensus_3174#1 GAAAGTTATAATGAATATATTAATGTATACAAACAGCTACGAGAAATGG--ATGGAAATG 713 ************************************************* ********* consensus_3174#0 CAATGTTTGGAGTAGCTTAAACTCTCTAGTTTGTAAATCGATCGTCATGGATCGATGGCT 769 consensus_3174#1 CAATGTTTGGAGTAGCT-AAACTCTCTAGTTTGTAAA----------------------- 749 ***************** ******************* consensus_3174#0 GAAGGATTACCAAATGTACTGCGT 793 consensus_3174#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||