These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3175#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [AACTCAAAACTGAAATGTCTTGCTCATTACCGCGGTTCGATGATCCGGACGATTTGTTCGATGCGTTTGCGATCGTCATCTGGTTGGTCTGCTGTATGACGGCTGCCAGGTCGCTCTGCGAGGCCGACGTGTCCTTGCTGGTAAGAATGTCGGAGCTGCTCGACCCGGACGACGGATGCCGCTCCCCGGTGCATCCGTACTGGATCGGTTGGTAGCCATGCGACGGGTTGTAGTTGCCAGAGTACGTCATGTAGATCGGCGGATTGGGCAGTGGCGCGATGTCGCTCAGCATGCTTTCCGTGTCCTCGAGCGACATGTTCGAGATGTCCTGGCGGATGCCATTGCCGACGACGTAGTAGCACTGCTCCGAGAACGTTAGCTTGTTGACGGTGTGCTTGATGTAGCCGCGCCTCAGCATTAGCGAGACGTACTTGCGGGCCTCCCTGCGGTCTCCGATACCGTCCACGTGTTCCAGTATCCAGTTGACAACGTCCGCGCCGATAAACGCATTCGGAATGGTGATCTTGAGCCACATCCGGTCACGAATCTCGAGCCCACTGTCGGGCTTTGTCATTGCACGTACAATATCCTTCATGTCCATATCGGCGTGCAGGCGCTCAAGCACCGATTCCGGCAGATCGGTGTTGATCGTGTCCTGCGAGCGCAGCTTGCCGGTATGTG] [+] EMBL CNS09EOQ [AACTCAAAACTGAAATGTCTTGCTCATTACCGCGGTTCGATGATCCGGACGATTTGTTCGATGCGTTTGCGATCGTCATCTGGTTGGTCTGCTGTATGACGGCTGCCAGGTCGCTCTGCGAGGCCGACGTGTCCTTGCTGGTAAGAATGTCGGAGCTGCTCGACCCGGACGACGGATGCCGCTCCCCGGTGCATCCGTACTGGATCGGTTGGTAGCCATGCGACGGGTTGTAGTTGCCAGAGTACGTCATGTAGATCGGCGGATTGGGCAGTGGCGCGATGTCGCTCAGCATGCTTTCCGTGTCCTCGAGCGACATGTTCGAGATGTCCTGGCGGATGCCATTGCCGACGACGTAGTAGCACTGCTCCGAGAACGTTAGCTTGTTGACGGTGTGCTTGATGTAGCCGCGCCTCAGCATTAGCGAGACGTACTTGCGGGCCTCCCTGCGGTCTCCGATACCGTCCACGTGTTCCAGTATCCAGTTGACAACGTCCGCGCCGATAAACGCATTCGGAATGGTGATCTTGAGCCACATCCGGTCACGAATCTCGAGCCCACTGTCGGGCTTTGTCATTGCACGTACAATATCCTTCATGTCCATATCGGCGTGCAGGCGCTCAAGCACCGATTCCGGCAGATCGGTGTTGATCGTGTCCTGCGAGCGCAGCTTGCCGGTATGTG] consensusID : consensus_3175#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence [GTGGTGGTGGGACATACGTGTGTTCCGTTTGTTTTTCGTTTTGTTTCGCGTTTGTTAAATTATTTGAAAAAGAATCGAAATGAAAGCAAATCATAAATAGCTCAAAACGCGGTTCGATGATCCGGACGATTTGTTCGATGCGTTTGCGATCGTCATCTGGTTGGTCTGCTGTATGACGGCTGCCAGGTCGCTCTGCGAGGCCGACGTGTCCTTGCTGGTAAGAATGTCGGAGCTGCTCGACCCGGACGACGGATGCCGCTCCCCGGTGCATCCGTACTGGATCGGTTGGTAGCCATGCGACGGGTTGTAGTTGCCAGAGTACGTCATGTAGATCGGCGGATTGGGCAGTGGCGCGATGTCGCTCAGCATGCTTTCCGTGTCCTCGAGCGACATGTTCGAGATGTCCTGGCGGATGCCATTGCCGACGACGTAGTAGCACTGCTCCGAGAACGTTAGCTTGTTGACGGTGTGCTTGATGTAGCCGCGCCTCAGCATTAGCGAGACGTACTTGCGGGCCTCCCTGCGGTCTCCGATACCGTCCACGTGTTCCAGTATCCAGTTGACAACGTCCGCGCCGATAAACGCATTCGGAATGGTGATCTTGAGCCACATCCGGTCACGAATCTCGAGCCCACTGTCGGGCTTTGTCATTGCACGTACAATATCCTTCATGTCCATA] [-] EMBL BX609252 [GTGGTGGTGGGACATACGTGTGTTCCGTTTGTTTTTCGTTTTGTTTCGCGTTTGTTAAATTATTTGAAAAAGAATCGAAATGAAAGCAAATCATAAATAGCTCAAAACGCGGTTCGATGATCCGGACGATTTGTTCGATGCGTTTGCGATCGTCATCTGGTTGGTCTGCTGTATGACGGCTGCCAGGTCGCTCTGCGAGGCCGACGTGTCCTTGCTGGTAAGAATGTCGGAGCTGCTCGACCCGGACGACGGATGCCGCTCCCCGGTGCATCCGTACTGGATCGGTTGGTAGCCATGCGACGGGTTGTAGTTGCCAGAGTACGTCATGTAGATCGGCGGATTGGGCAGTGGCGCGATGTCGCTCAGCATGCTTTCCGTGTCCTCGAGCGACATGTTCGAGATGTCCTGGCGGATGCCATTGCCGACGACGTAGTAGCACTGCTCCGAGAACGTTAGCTTGTTGACGGTGTGCTTGATGTAGCCGCGCCTCAGCATTAGCGAGACGTACTTGCGGGCCTCCCTGCGGTCTCCGATACCGTCCACGTGTTCCAGTATCCAGTTGACAACGTCCGCGCCGATAAACGCATTCGGAATGGTGATCTTGAGCCACATCCGGTCACGAATCTCGAGCCCACTGTCGGGCTTTGTCATTGCACGTACAATATCCTTCATGTCCATA] consensusID : consensus_3175#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 458 fasta sequence [TCTCATCACTGCTGCTGCTCTATATATGCCCTACTGATTGTTATATATGTGTCCCGATTCCTTTCGGCCACTACCGTTTCGACCGAACGATTGCTGATGCTGAAGTTGATGCTGTTGCTGCTGCAAAGTGGGCTGCATCGGCTGATGCTGGAAGTAGATGCTGTCCTCGTACCCCTCGTCGTCCTTCGTGCTGATCAGCTTGCCGCCGATGCCTCCGCTGCCTAATCTCGTTGTCTTAAAGTCGCGGTTCGATGATCCGGACGATTTGTTCGATGCGTTTGCGATCGTCATCTGGTTGGTCTGCTGTATGACGGCTGCCAGGTCGCTCTGCGAGGCCGACGTGTCCTTGCTGGTAAGAATGTCGGAGCTGCTCGACCCGGACGACGGATGCCGCTCCCCGGTGCATCCGTACTGGATCGGTTGGTAGCCATGCGACGGGTTGTAGTTGCCAGAGTCGG] [-] EMBL BM632446 [TCTCATCACTGCTGCTGCTCTATATATGCCCTACTGATTGTTATATATGTGTCCCGATTCCTTTCGGCCACTACCGTTTCGACCGAACGATTGCTGATGCTGAAGTTGATGCTGTTGCTGCTGCAAAGTGGGCTGCATCGGCTGATGCTGGAAGTAGATGCTGTCCTCGTACCCCTCGTCGTCCTTCGTGCTGATCAGCTTGCCGCCGATGCCTCCGCTGCCTAATCTCGTTGTCTTAAAGTCGCGGTTCGATGATCCGGACGATTTGTTCGATGCGTTTGCGATCGTCATCTGGTTGGTCTGCTGTATGACGGCTGCCAGGTCGCTCTGCGAGGCCGACGTGTCCTTGCTGGTAAGAATGTCGGAGCTGCTCGACCCGGACGACGGATGCCGCTCCCCGGTGCATCCGTACTGGATCGGTTGGTAGCCATGCGACGGGTTGTAGTTGCCAGAGTCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3175#0 ------------------------------------------------------------ consensus_3175#1 ------------------------------------------------------------ consensus_3175#2 TCTCATCACTGCTGCTGCTCTATATATGCCCTACTGATTGTTATATATGTGTCCCGATTC 60 consensus_3175#0 ------------------------------------------------------------ consensus_3175#1 ------------------------------------------------------------ consensus_3175#2 CTTTCGGCCACTACCGTTTCGACCGAACGATTGCTGATGCTGAAGTTGATGCTGTTGCTG 120 consensus_3175#0 ------------------------------------------------------------ consensus_3175#1 --------------------GTGGTGGTGGGACATACGTGTGTTCCGTTTGTTTTTCGTT 40 consensus_3175#2 CTGCAAAGTGGGCTGCATCGGCTGATGCTGGAAGTAGATGCTGTCCTCGTACCCCTCGTC 180 consensus_3175#0 -------------------------------------AACTCAAAACTGAA-ATGTCTTG 22 consensus_3175#1 TTGTTTCGCGTTTGTTAAATTATTTGAAAAAGAATCGAAATGAAAGCAAATCATAAATAG 100 consensus_3175#2 GTCCTTCGTGCTGATCAGCTTGCCGCCGATGCCTCCGCTGCCTAATCTCGT------TGT 234 ** * * consensus_3175#0 CTCATTACCGCGGTTCGATGATCCGGACGATTTGTTCGATGCGTTTGCGATCGTCATCTG 82 consensus_3175#1 CTCAA-AACGCGGTTCGATGATCCGGACGATTTGTTCGATGCGTTTGCGATCGTCATCTG 159 consensus_3175#2 CTTAAAGTCGCGGTTCGATGATCCGGACGATTTGTTCGATGCGTTTGCGATCGTCATCTG 294 ** * **************************************************** consensus_3175#0 GTTGGTCTGCTGTATGACGGCTGCCAGGTCGCTCTGCGAGGCCGACGTGTCCTTGCTGGT 142 consensus_3175#1 GTTGGTCTGCTGTATGACGGCTGCCAGGTCGCTCTGCGAGGCCGACGTGTCCTTGCTGGT 219 consensus_3175#2 GTTGGTCTGCTGTATGACGGCTGCCAGGTCGCTCTGCGAGGCCGACGTGTCCTTGCTGGT 354 ************************************************************ consensus_3175#0 AAGAATGTCGGAGCTGCTCGACCCGGACGACGGATGCCGCTCCCCGGTGCATCCGTACTG 202 consensus_3175#1 AAGAATGTCGGAGCTGCTCGACCCGGACGACGGATGCCGCTCCCCGGTGCATCCGTACTG 279 consensus_3175#2 AAGAATGTCGGAGCTGCTCGACCCGGACGACGGATGCCGCTCCCCGGTGCATCCGTACTG 414 ************************************************************ consensus_3175#0 GATCGGTTGGTAGCCATGCGACGGGTTGTAGTTGCCAGAGTACGTCATGTAGATCGGCGG 262 consensus_3175#1 GATCGGTTGGTAGCCATGCGACGGGTTGTAGTTGCCAGAGTACGTCATGTAGATCGGCGG 339 consensus_3175#2 GATCGGTTGGTAGCCATGCGACGGGTTGTAGTTGCCAGAGTCGG---------------- 458 ***************************************** * consensus_3175#0 ATTGGGCAGTGGCGCGATGTCGCTCAGCATGCTTTCCGTGTCCTCGAGCGACATGTTCGA 322 consensus_3175#1 ATTGGGCAGTGGCGCGATGTCGCTCAGCATGCTTTCCGTGTCCTCGAGCGACATGTTCGA 399 consensus_3175#2 ------------------------------------------------------------ consensus_3175#0 GATGTCCTGGCGGATGCCATTGCCGACGACGTAGTAGCACTGCTCCGAGAACGTTAGCTT 382 consensus_3175#1 GATGTCCTGGCGGATGCCATTGCCGACGACGTAGTAGCACTGCTCCGAGAACGTTAGCTT 459 consensus_3175#2 ------------------------------------------------------------ consensus_3175#0 GTTGACGGTGTGCTTGATGTAGCCGCGCCTCAGCATTAGCGAGACGTACTTGCGGGCCTC 442 consensus_3175#1 GTTGACGGTGTGCTTGATGTAGCCGCGCCTCAGCATTAGCGAGACGTACTTGCGGGCCTC 519 consensus_3175#2 ------------------------------------------------------------ consensus_3175#0 CCTGCGGTCTCCGATACCGTCCACGTGTTCCAGTATCCAGTTGACAACGTCCGCGCCGAT 502 consensus_3175#1 CCTGCGGTCTCCGATACCGTCCACGTGTTCCAGTATCCAGTTGACAACGTCCGCGCCGAT 579 consensus_3175#2 ------------------------------------------------------------ consensus_3175#0 AAACGCATTCGGAATGGTGATCTTGAGCCACATCCGGTCACGAATCTCGAGCCCACTGTC 562 consensus_3175#1 AAACGCATTCGGAATGGTGATCTTGAGCCACATCCGGTCACGAATCTCGAGCCCACTGTC 639 consensus_3175#2 ------------------------------------------------------------ consensus_3175#0 GGGCTTTGTCATTGCACGTACAATATCCTTCATGTCCATATCGGCGTGCAGGCGCTCAAG 622 consensus_3175#1 GGGCTTTGTCATTGCACGTACAATATCCTTCATGTCCATA-------------------- 679 consensus_3175#2 ------------------------------------------------------------ consensus_3175#0 CACCGATTCCGGCAGATCGGTGTTGATCGTGTCCTGCGAGCGCAGCTTGCCGGTATGTG 681 consensus_3175#1 ----------------------------------------------------------- consensus_3175#2 ----------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||