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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3178#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1114 fasta sequence
[CCGCGCTGATCAAGCACTCTGGCCCAAAGCAAACGAAGGAGGAAATGCAGCGAATACAGAACGCCGAACGATCGACGAGTAACTCGGAAAATCAAACCTTTCTAAAGGATCTGGTCAACCAGGTCCTAGCCGGGGAGGGCGTTGGATGGCTGAAGCTGAACCGACTCAAGAAACTGATGGAGGACGAATCGTATCGTATGCTGGTGCTGGGAAAGCTCAACAGGACGCTAGAGCGAAAGATTGGCCCAGACGACCATATCGACGACGTGTGCATATCGAAAGCAGTGTACAAAGGAACGCTCAAGTGTTTGTTGGCGATAACGCACGGGCTGGAGCACACGATAGGGAACTTTGGTCTCGGCGGGATGGCGTCCGTGTTTCAAATGATGGAAATCGCTCACACGCACTACTGGAGCAAGGATTTAAGTGAAGGTGCGGGTTCCGAGATGTCTGCCAGCTTGCTGTCCAGCCAGAGCGTAAGTCCGATGGGCAGTCGGGAGAACCTAAGGTCACCCCAAAGCCCCACGGAGCTGTCGGATTGGATGCTGGGTGGCTCTCGCAAAAGCTCCAGTGCTAACAACGACCATATCGCCCTCTCGCGTCACCCGTCGGAGAACGAGCAGGAGAACCAATCTACGTCGGAAATGTTCAAGGACATGCTGTCCCTGAAACGGAATGTGTTGTTCAACAAGCTGACATCCTTTGAGTCGGAGGGTAGCATTGCGATGCAAGATTCATCTGGGACATTATCTGTCGCTAGTGACGTTTTGCCGCAACAGCAATCCGGTGACTTTTTGGCTACCTCTATCCCTTGCCGTTCGACGGTGTCGGATACCGAGTATGAGAAATTTCCGAAAAGCTCCACCCTGAAGGACGCAAAAAAGATGGCGGGTGGTATATTTTCCGGCAAGTCATCACTAAGTGCGGGCTTTCGCTACACTGGCGGCAGCCTAATTCCGTCGTCCGGGTCGCCTTCGCCGGATGCGCCCCGGGTGTATCTGTTCGAGGGGCTGCTAGGTAAGGATCGGTCCAGCATCTGGGACCAGATGCAGTTCTGGGAAGACGCGTTCCTGGACGCGGTCAGCCAGGAGCGGGACATGATCGGCATGGATCA]
[+] EMBL BM636574 [CCGCGCTGATCAAGCACTCTGGCCCAAAGCAAACGAAGGAGGAAATGCAGCGAATACAGAACGCCGAACGATCGACGAGTAACTCGGAAAATCAAACCTTTCTAAAGGATCTGGTCAACCAGGTCCTAGCCGGGGAGGGCGTTGGATGGCTGAAGCTGAACCGACTCAAGAAACTGATGGAGGACGAATCGTATCGTATGCTGGTGCTGGGAAAGCTCAACAGGACGCTAGAGCGAAAGATTGGCCCAGACGACCATATCGACGACGTGTGCATATCGAAAGCAGTGTACAAAGGAACGCTCAAGTGTTTGTTGGCGATAACGCACGGGCTGGAGCACACGATAGGGAACTTTGGTCTCGGCGGGATGGCGTCCGTGTTTCAAATGATGGAAATCGCTCACACGCACTACTGGAGCAAGGATTTAAGTGAAGGTGCGGGTTCCGAGATGTCTGCCAGCTTGCTGTCCAGCCAGAGCGTAAGTCCGATGGGCAGTCGGGAGAACCTAAGGTCACCCCAAAGCCCCACGGAGCTGTCGGATTGGATGCTGGGTGGCTCTCGCAAAAGCTCCAGTGCTAACAACGACCATATCGCCCTCTCGCGTCACCCGTCGGAGAACGAGCAGGAGAACCAATCTACGTCGGAAATGTTCAAGGACATGCTGTCCCTGAAACGGAATGTGTTGTTCAACAA ]
[+] EMBL BM586247 [ cCGGAGCTGTCGGATTGGATGCTGGGTGGCTCTCGCAAAAGCTCCAGTGCTAACAACGACCATATCGCCCTCTCGCGTCACCCGTCGGAGAACGAGCAGGAGAACCAATCTACGTCGGAAATGTTCAAGGACATGCTGTCCCTGAAACGGAATGTGTTGTTCAACAAGCTGACATCCTTTGAGTCGGAGGGTAGCATTGCGATGCAAGATTCATCTGGGACATTATCTGTCGCTAGTGACGTTTTGCCGCAACAGCAATCCGGTGACTTTTTGGCTACCTCTATCCCTTGCCGTTCGACGGTGTCGGATACCGAGTATGAGAAATTTCCGAAAAGCTCCACCCTGAAGGACGCAAAAAAGATGGCGGGTGGTATATTTTCCGGCAAGTCATCACTAAGTGCGGGCTTTCGCTACACTGGCGGCAGCCTAATTCCGTCGTCCGGGTCGCCTTCGCCGGATGCGCCCCGGGTGTATCTGTTCGAGGGGCTGCTAGGTAAGGATCGGTCCAGCATCTGGGACCAGATGCAGTTCTGGGAAGACGCGTTCCTGGACGCGGTCAGCCAGGAGCGGGACATGATCGGCATGGATCA]
consensusID : consensus_3178#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence
[CCGGCTCGACGCCTTAGTCGCCAATACCGTACCCAGTAGGAAAATTTGATCCTCAAGCCACGTTCACTGTTGTTCGACTTTTTGTTTTCGTTTTGTTGTATTATAGTACAATCTGATCCTAATCGGAATGCCCTGAAACGTACCTTTATGTGTGTTCGATAGTTATGTTTGTGTTTTGTTTGGCTCTGTGTTAGTTTGGATTTGTTTTCGACCAGAAAAAAAAATGCGATACCATTTCGGTCCGATCTGTCCTTGCCGCTCACCATCCATTAACTTATCCTCAGATCCCTTTCGAGCAGTATATTCGCTTCTCTACATCTCTATGTGTACGCTTGAAATTTGTGTCTCCTCGCCTTTTACAACACAGGGTAGCATTGCGATGCAAGATTCATCTGGGACATTATCTGTCGCTAGTGACGTTTTGCCGCAACAGCAATCCGGTGACTTTTTGGCTACCTCTATCTCTTGCCGTTCGACGGTGTCGGATACCGAGTATGAGAAATTTCCGAAAAGCTCCACCCTGAAGGACGCAAAAAAGATGGCGGGTGGTATATTTTCCGGCAAGTCATCACTAAGTGCGGGCTTTCGCTACACTGGCGGCAGCCTAATTCCGTCGTCCGGGTCGCCTTCGCCGGATGCGCCCCGGGTGTATCTGTTCGAGGGGCTGCTAGGTAAGGATCGGTCCAGCATCTGGGAC]
[+] EMBL BM600200 [CCGGCTCGACGCCTTAGTCGCCAATACCGTACCCAGTAGGAAAATTTGATCCTCAAGCCACGTTCACTGTTGTTCGACTTTTTGTTTTCGTTTTGTTGTATTATAGTACAATCTGATCCTAATCGGAATGCCCTGAAACGTACCTTTATGTGTGTTCGATAGTTATGTTTGTGTTTTGTTTGGCTCTGTGTTAGTTTGGATTTGTTTTCGACCAGAAAAAAAAATGCGATACCATTTCGGTCCGATCTGTCCTTGCCGCTCACCATCCATTAACTTATCCTCAGATCCCTTTCGAGCAGTATATTCGCTTCTCTACATCTCTATGTGTACGCTTGAAATTTGTGTCTCCTCGCCTTTTACAACACAGGGTAGCATTGCGATGCAAGATTCATCTGGGACATTATCTGTCGCTAGTGACGTTTTGCCGCAACAGCAATCCGGTGACTTTTTGGCTACCTCTATCTCTTGCCGTTCGACGGTGTCGGATACCGAGTATGAGAAATTTCCGAAAAGCTCCACCCTGAAGGACGCAAAAAAGATGGCGGGTGGTATATTTTCCGGCAAGTCATCACTAAGTGCGGGCTTTCGCTACACTGGCGGCAGCCTAATTCCGTCGTCCGGGTCGCCTTCGCCGGATGCGCCCCGGGTGTATCTGTTCGAGGGGCTGCTAGGTAAGGATCGGTCCAGCATCTGGGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3178#0 CCGCGCTGATCAAGCACTCTGGCCCAAAGCAAACGAAGGAGGAAATGCAGCGAATACAGA 60
consensus_3178#1 ------------------------------------------------------------
consensus_3178#0 ACGCCGAACGATCGACGAGTAACTCGGAAAATCAAACCTTTCTAAAGGATCTGGTCAACC 120
consensus_3178#1 ------------------------------------------------------------
consensus_3178#0 AGGTCCTAGCCGGGGAGGGCGTTGGATGGCTGAAGCTGAACCGACTCAAGAAACTGATGG 180
consensus_3178#1 ------------------------------------------------------------
consensus_3178#0 AGGACGAATCGTATCGTATGCTGGTGCTGGGAAAGCTCAACAGGACGCTAGAGCGAAAGA 240
consensus_3178#1 ------------------------------------------------------------
consensus_3178#0 TTGGCCCAGACGACCATATCGACGACGTGTGCATATCGAAAGCAGTGTACAAAGGAACGC 300
consensus_3178#1 -------------------------------------------------------CCGGC 5
**
consensus_3178#0 TCAA-GTGTTTGTTGGCGATAACGCACGGGCTGGAGCACACGATAGGGAACTTTGGTCTC 359
consensus_3178#1 TCGACGCCTTAGTCGCCAATACCGTACC------------CAGTAGGAAAATTTGATCCT 53
** * * ** ** * * *** ** ** * **** ** **** **
consensus_3178#0 GGCGGGATGGCGTCCGTGTTTCAAATGATGGAAATCGCTCACACGCACTACTGGAGCAAG 419
consensus_3178#1 CAAGCCACGTTCACTGTTGTTCGACTTTTTGTTTTCGTTT---TGTTGTATTATAGTACA 110
* * * * ** *** * * * * *** * * ** * ** *
consensus_3178#0 GATTTAAGTGAAGGTGCGGGTTCCGAGATGTCTGCCAGCTTGCTGTCCAGCCAGAGCGTA 479
consensus_3178#1 ATCTGATCCTAATCGGAATGCCCTGAAACGT-----ACCTTTATGTGTGTTCGATAGTTA 165
* * ** * * * ** * ** * *** *** * **
consensus_3178#0 AGTCCGATGGGCAGTCGGGAGAACCTAAGGTCACCCCAAAGCCCCACGGAGCTGTCGGAT 539
consensus_3178#1 TGTTTG-TGTTTTGTTTGG----CTCTGTGTTAGTTTGGATTTGTTTTCGACCAGAAAAA 220
** * ** ** ** * ** * * * *
consensus_3178#0 TGGATGCTGGGTGGCTCTCGCAAAAGCT-CCAGTGCTAACAACGACCATATCGCCCTCTC 598
consensus_3178#1 AAAATGCGATACCATTTCGGTCCGATCTGTCCTTGCCGCTCACCATC-CATTAACTTATC 279
**** * * * ** * *** ** * * ** * * **
consensus_3178#0 GCGTCACCCGTCGGAGAACGAGCAGGAGAACCAATCTACGTCGGAAATGTTCAAGGACAT 658
consensus_3178#1 CTCAGATCCCTTT-----CGAGCAGTATATTCGCTTCTCT----ACATCTCTATGTGTAC 330
* ** * ******* * * * * * * ** * * * *
consensus_3178#0 GCTGTCCCTGAAACGGAATGTGTTGTTCAACAAGCTGACATCCTTTGAGTCGGAGGGTAG 718
consensus_3178#1 GCT----------TGAAATTTGTGTCTC------CT--CGCCTTTTACAACACAGGGTAG 372
*** * *** *** ** ** * * *** * *******
consensus_3178#0 CATTGCGATGCAAGATTCATCTGGGACATTATCTGTCGCTAGTGACGTTTTGCCGCAACA 778
consensus_3178#1 CATTGCGATGCAAGATTCATCTGGGACATTATCTGTCGCTAGTGACGTTTTGCCGCAACA 432
************************************************************
consensus_3178#0 GCAATCCGGTGACTTTTTGGCTACCTCTATCCCTTGCCGTTCGACGGTGTCGGATACCGA 838
consensus_3178#1 GCAATCCGGTGACTTTTTGGCTACCTCTATCTCTTGCCGTTCGACGGTGTCGGATACCGA 492
******************************* ****************************
consensus_3178#0 GTATGAGAAATTTCCGAAAAGCTCCACCCTGAAGGACGCAAAAAAGATGGCGGGTGGTAT 898
consensus_3178#1 GTATGAGAAATTTCCGAAAAGCTCCACCCTGAAGGACGCAAAAAAGATGGCGGGTGGTAT 552
************************************************************
consensus_3178#0 ATTTTCCGGCAAGTCATCACTAAGTGCGGGCTTTCGCTACACTGGCGGCAGCCTAATTCC 958
consensus_3178#1 ATTTTCCGGCAAGTCATCACTAAGTGCGGGCTTTCGCTACACTGGCGGCAGCCTAATTCC 612
************************************************************
consensus_3178#0 GTCGTCCGGGTCGCCTTCGCCGGATGCGCCCCGGGTGTATCTGTTCGAGGGGCTGCTAGG 1018
consensus_3178#1 GTCGTCCGGGTCGCCTTCGCCGGATGCGCCCCGGGTGTATCTGTTCGAGGGGCTGCTAGG 672
************************************************************
consensus_3178#0 TAAGGATCGGTCCAGCATCTGGGACCAGATGCAGTTCTGGGAAGACGCGTTCCTGGACGC 1078
consensus_3178#1 TAAGGATCGGTCCAGCATCTGGGAC----------------------------------- 697
*************************
consensus_3178#0 GGTCAGCCAGGAGCGGGACATGATCGGCATGGATCA 1114
consensus_3178#1 ------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||