Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3178 cluster # 3178       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3178#0 length = 1114 sequences # 2  
consensus_3178#1 length = 697 sequences # 1  

consensusID : consensus_3178#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1114
fasta sequence
                              [CCGCGCTGATCAAGCACTCTGGCCCAAAGCAAACGAAGGAGGAAATGCAGCGAATACAGAACGCCGAACGATCGACGAGTAACTCGGAAAATCAAACCTTTCTAAAGGATCTGGTCAACCAGGTCCTAGCCGGGGAGGGCGTTGGATGGCTGAAGCTGAACCGACTCAAGAAACTGATGGAGGACGAATCGTATCGTATGCTGGTGCTGGGAAAGCTCAACAGGACGCTAGAGCGAAAGATTGGCCCAGACGACCATATCGACGACGTGTGCATATCGAAAGCAGTGTACAAAGGAACGCTCAAGTGTTTGTTGGCGATAACGCACGGGCTGGAGCACACGATAGGGAACTTTGGTCTCGGCGGGATGGCGTCCGTGTTTCAAATGATGGAAATCGCTCACACGCACTACTGGAGCAAGGATTTAAGTGAAGGTGCGGGTTCCGAGATGTCTGCCAGCTTGCTGTCCAGCCAGAGCGTAAGTCCGATGGGCAGTCGGGAGAACCTAAGGTCACCCCAAAGCCCCACGGAGCTGTCGGATTGGATGCTGGGTGGCTCTCGCAAAAGCTCCAGTGCTAACAACGACCATATCGCCCTCTCGCGTCACCCGTCGGAGAACGAGCAGGAGAACCAATCTACGTCGGAAATGTTCAAGGACATGCTGTCCCTGAAACGGAATGTGTTGTTCAACAAGCTGACATCCTTTGAGTCGGAGGGTAGCATTGCGATGCAAGATTCATCTGGGACATTATCTGTCGCTAGTGACGTTTTGCCGCAACAGCAATCCGGTGACTTTTTGGCTACCTCTATCCCTTGCCGTTCGACGGTGTCGGATACCGAGTATGAGAAATTTCCGAAAAGCTCCACCCTGAAGGACGCAAAAAAGATGGCGGGTGGTATATTTTCCGGCAAGTCATCACTAAGTGCGGGCTTTCGCTACACTGGCGGCAGCCTAATTCCGTCGTCCGGGTCGCCTTCGCCGGATGCGCCCCGGGTGTATCTGTTCGAGGGGCTGCTAGGTAAGGATCGGTCCAGCATCTGGGACCAGATGCAGTTCTGGGAAGACGCGTTCCTGGACGCGGTCAGCCAGGAGCGGGACATGATCGGCATGGATCA]

[+] EMBL BM636574             [CCGCGCTGATCAAGCACTCTGGCCCAAAGCAAACGAAGGAGGAAATGCAGCGAATACAGAACGCCGAACGATCGACGAGTAACTCGGAAAATCAAACCTTTCTAAAGGATCTGGTCAACCAGGTCCTAGCCGGGGAGGGCGTTGGATGGCTGAAGCTGAACCGACTCAAGAAACTGATGGAGGACGAATCGTATCGTATGCTGGTGCTGGGAAAGCTCAACAGGACGCTAGAGCGAAAGATTGGCCCAGACGACCATATCGACGACGTGTGCATATCGAAAGCAGTGTACAAAGGAACGCTCAAGTGTTTGTTGGCGATAACGCACGGGCTGGAGCACACGATAGGGAACTTTGGTCTCGGCGGGATGGCGTCCGTGTTTCAAATGATGGAAATCGCTCACACGCACTACTGGAGCAAGGATTTAAGTGAAGGTGCGGGTTCCGAGATGTCTGCCAGCTTGCTGTCCAGCCAGAGCGTAAGTCCGATGGGCAGTCGGGAGAACCTAAGGTCACCCCAAAGCCCCACGGAGCTGTCGGATTGGATGCTGGGTGGCTCTCGCAAAAGCTCCAGTGCTAACAACGACCATATCGCCCTCTCGCGTCACCCGTCGGAGAACGAGCAGGAGAACCAATCTACGTCGGAAATGTTCAAGGACATGCTGTCCCTGAAACGGAATGTGTTGTTCAACAA                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BM586247             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            cCGGAGCTGTCGGATTGGATGCTGGGTGGCTCTCGCAAAAGCTCCAGTGCTAACAACGACCATATCGCCCTCTCGCGTCACCCGTCGGAGAACGAGCAGGAGAACCAATCTACGTCGGAAATGTTCAAGGACATGCTGTCCCTGAAACGGAATGTGTTGTTCAACAAGCTGACATCCTTTGAGTCGGAGGGTAGCATTGCGATGCAAGATTCATCTGGGACATTATCTGTCGCTAGTGACGTTTTGCCGCAACAGCAATCCGGTGACTTTTTGGCTACCTCTATCCCTTGCCGTTCGACGGTGTCGGATACCGAGTATGAGAAATTTCCGAAAAGCTCCACCCTGAAGGACGCAAAAAAGATGGCGGGTGGTATATTTTCCGGCAAGTCATCACTAAGTGCGGGCTTTCGCTACACTGGCGGCAGCCTAATTCCGTCGTCCGGGTCGCCTTCGCCGGATGCGCCCCGGGTGTATCTGTTCGAGGGGCTGCTAGGTAAGGATCGGTCCAGCATCTGGGACCAGATGCAGTTCTGGGAAGACGCGTTCCTGGACGCGGTCAGCCAGGAGCGGGACATGATCGGCATGGATCA]


>consensus_3178#0 CCGCGCTGATCAAGCACTCTGGCCCAAAGCAAACGAAGGAGGAAATGCAGCGAATACAGA ACGCCGAACGATCGACGAGTAACTCGGAAAATCAAACCTTTCTAAAGGATCTGGTCAACC AGGTCCTAGCCGGGGAGGGCGTTGGATGGCTGAAGCTGAACCGACTCAAGAAACTGATGG AGGACGAATCGTATCGTATGCTGGTGCTGGGAAAGCTCAACAGGACGCTAGAGCGAAAGA TTGGCCCAGACGACCATATCGACGACGTGTGCATATCGAAAGCAGTGTACAAAGGAACGC TCAAGTGTTTGTTGGCGATAACGCACGGGCTGGAGCACACGATAGGGAACTTTGGTCTCG GCGGGATGGCGTCCGTGTTTCAAATGATGGAAATCGCTCACACGCACTACTGGAGCAAGG ATTTAAGTGAAGGTGCGGGTTCCGAGATGTCTGCCAGCTTGCTGTCCAGCCAGAGCGTAA GTCCGATGGGCAGTCGGGAGAACCTAAGGTCACCCCAAAGCCCCACGGAGCTGTCGGATT GGATGCTGGGTGGCTCTCGCAAAAGCTCCAGTGCTAACAACGACCATATCGCCCTCTCGC GTCACCCGTCGGAGAACGAGCAGGAGAACCAATCTACGTCGGAAATGTTCAAGGACATGC TGTCCCTGAAACGGAATGTGTTGTTCAACAAGCTGACATCCTTTGAGTCGGAGGGTAGCA TTGCGATGCAAGATTCATCTGGGACATTATCTGTCGCTAGTGACGTTTTGCCGCAACAGC AATCCGGTGACTTTTTGGCTACCTCTATCCCTTGCCGTTCGACGGTGTCGGATACCGAGT ATGAGAAATTTCCGAAAAGCTCCACCCTGAAGGACGCAAAAAAGATGGCGGGTGGTATAT TTTCCGGCAAGTCATCACTAAGTGCGGGCTTTCGCTACACTGGCGGCAGCCTAATTCCGT CGTCCGGGTCGCCTTCGCCGGATGCGCCCCGGGTGTATCTGTTCGAGGGGCTGCTAGGTA AGGATCGGTCCAGCATCTGGGACCAGATGCAGTTCTGGGAAGACGCGTTCCTGGACGCGG TCAGCCAGGAGCGGGACATGATCGGCATGGATCA



consensusID : consensus_3178#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 697
fasta sequence
                              [CCGGCTCGACGCCTTAGTCGCCAATACCGTACCCAGTAGGAAAATTTGATCCTCAAGCCACGTTCACTGTTGTTCGACTTTTTGTTTTCGTTTTGTTGTATTATAGTACAATCTGATCCTAATCGGAATGCCCTGAAACGTACCTTTATGTGTGTTCGATAGTTATGTTTGTGTTTTGTTTGGCTCTGTGTTAGTTTGGATTTGTTTTCGACCAGAAAAAAAAATGCGATACCATTTCGGTCCGATCTGTCCTTGCCGCTCACCATCCATTAACTTATCCTCAGATCCCTTTCGAGCAGTATATTCGCTTCTCTACATCTCTATGTGTACGCTTGAAATTTGTGTCTCCTCGCCTTTTACAACACAGGGTAGCATTGCGATGCAAGATTCATCTGGGACATTATCTGTCGCTAGTGACGTTTTGCCGCAACAGCAATCCGGTGACTTTTTGGCTACCTCTATCTCTTGCCGTTCGACGGTGTCGGATACCGAGTATGAGAAATTTCCGAAAAGCTCCACCCTGAAGGACGCAAAAAAGATGGCGGGTGGTATATTTTCCGGCAAGTCATCACTAAGTGCGGGCTTTCGCTACACTGGCGGCAGCCTAATTCCGTCGTCCGGGTCGCCTTCGCCGGATGCGCCCCGGGTGTATCTGTTCGAGGGGCTGCTAGGTAAGGATCGGTCCAGCATCTGGGAC]

[+] EMBL BM600200             [CCGGCTCGACGCCTTAGTCGCCAATACCGTACCCAGTAGGAAAATTTGATCCTCAAGCCACGTTCACTGTTGTTCGACTTTTTGTTTTCGTTTTGTTGTATTATAGTACAATCTGATCCTAATCGGAATGCCCTGAAACGTACCTTTATGTGTGTTCGATAGTTATGTTTGTGTTTTGTTTGGCTCTGTGTTAGTTTGGATTTGTTTTCGACCAGAAAAAAAAATGCGATACCATTTCGGTCCGATCTGTCCTTGCCGCTCACCATCCATTAACTTATCCTCAGATCCCTTTCGAGCAGTATATTCGCTTCTCTACATCTCTATGTGTACGCTTGAAATTTGTGTCTCCTCGCCTTTTACAACACAGGGTAGCATTGCGATGCAAGATTCATCTGGGACATTATCTGTCGCTAGTGACGTTTTGCCGCAACAGCAATCCGGTGACTTTTTGGCTACCTCTATCTCTTGCCGTTCGACGGTGTCGGATACCGAGTATGAGAAATTTCCGAAAAGCTCCACCCTGAAGGACGCAAAAAAGATGGCGGGTGGTATATTTTCCGGCAAGTCATCACTAAGTGCGGGCTTTCGCTACACTGGCGGCAGCCTAATTCCGTCGTCCGGGTCGCCTTCGCCGGATGCGCCCCGGGTGTATCTGTTCGAGGGGCTGCTAGGTAAGGATCGGTCCAGCATCTGGGAC]


>consensus_3178#1 CCGGCTCGACGCCTTAGTCGCCAATACCGTACCCAGTAGGAAAATTTGATCCTCAAGCCA CGTTCACTGTTGTTCGACTTTTTGTTTTCGTTTTGTTGTATTATAGTACAATCTGATCCT AATCGGAATGCCCTGAAACGTACCTTTATGTGTGTTCGATAGTTATGTTTGTGTTTTGTT TGGCTCTGTGTTAGTTTGGATTTGTTTTCGACCAGAAAAAAAAATGCGATACCATTTCGG TCCGATCTGTCCTTGCCGCTCACCATCCATTAACTTATCCTCAGATCCCTTTCGAGCAGT ATATTCGCTTCTCTACATCTCTATGTGTACGCTTGAAATTTGTGTCTCCTCGCCTTTTAC AACACAGGGTAGCATTGCGATGCAAGATTCATCTGGGACATTATCTGTCGCTAGTGACGT TTTGCCGCAACAGCAATCCGGTGACTTTTTGGCTACCTCTATCTCTTGCCGTTCGACGGT GTCGGATACCGAGTATGAGAAATTTCCGAAAAGCTCCACCCTGAAGGACGCAAAAAAGAT GGCGGGTGGTATATTTTCCGGCAAGTCATCACTAAGTGCGGGCTTTCGCTACACTGGCGG CAGCCTAATTCCGTCGTCCGGGTCGCCTTCGCCGGATGCGCCCCGGGTGTATCTGTTCGA GGGGCTGCTAGGTAAGGATCGGTCCAGCATCTGGGAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3178#0      CCGCGCTGATCAAGCACTCTGGCCCAAAGCAAACGAAGGAGGAAATGCAGCGAATACAGA 60
consensus_3178#1      ------------------------------------------------------------
                                                                                  

consensus_3178#0      ACGCCGAACGATCGACGAGTAACTCGGAAAATCAAACCTTTCTAAAGGATCTGGTCAACC 120
consensus_3178#1      ------------------------------------------------------------
                                                                                  

consensus_3178#0      AGGTCCTAGCCGGGGAGGGCGTTGGATGGCTGAAGCTGAACCGACTCAAGAAACTGATGG 180
consensus_3178#1      ------------------------------------------------------------
                                                                                  

consensus_3178#0      AGGACGAATCGTATCGTATGCTGGTGCTGGGAAAGCTCAACAGGACGCTAGAGCGAAAGA 240
consensus_3178#1      ------------------------------------------------------------
                                                                                  

consensus_3178#0      TTGGCCCAGACGACCATATCGACGACGTGTGCATATCGAAAGCAGTGTACAAAGGAACGC 300
consensus_3178#1      -------------------------------------------------------CCGGC 5
                                                                                **

consensus_3178#0      TCAA-GTGTTTGTTGGCGATAACGCACGGGCTGGAGCACACGATAGGGAACTTTGGTCTC 359
consensus_3178#1      TCGACGCCTTAGTCGCCAATACCGTACC------------CAGTAGGAAAATTTGATCCT 53
                      ** * *  ** ** * * *** ** **             *  **** ** **** **  

consensus_3178#0      GGCGGGATGGCGTCCGTGTTTCAAATGATGGAAATCGCTCACACGCACTACTGGAGCAAG 419
consensus_3178#1      CAAGCCACGTTCACTGTTGTTCGACTTTTTGTTTTCGTTT---TGTTGTATTATAGTACA 110
                         *  * *    * **  *** * *  * *   *** *     *   ** *  ** *  

consensus_3178#0      GATTTAAGTGAAGGTGCGGGTTCCGAGATGTCTGCCAGCTTGCTGTCCAGCCAGAGCGTA 479
consensus_3178#1      ATCTGATCCTAATCGGAATGCCCTGAAACGT-----ACCTTTATGTGTGTTCGATAGTTA 165
                         * *    **   *   *  * ** * **     * ***  ***     *      **

consensus_3178#0      AGTCCGATGGGCAGTCGGGAGAACCTAAGGTCACCCCAAAGCCCCACGGAGCTGTCGGAT 539
consensus_3178#1      TGTTTG-TGTTTTGTTTGG----CTCTGTGTTAGTTTGGATTTGTTTTCGACCAGAAAAA 220
                       **  * **    **  **    *     ** *      *           *      * 

consensus_3178#0      TGGATGCTGGGTGGCTCTCGCAAAAGCT-CCAGTGCTAACAACGACCATATCGCCCTCTC 598
consensus_3178#1      AAAATGCGATACCATTTCGGTCCGATCTGTCCTTGCCGCTCACCATC-CATTAACTTATC 279
                         ****        *   *    * **  *  ***     ** * *  **   * * **

consensus_3178#0      GCGTCACCCGTCGGAGAACGAGCAGGAGAACCAATCTACGTCGGAAATGTTCAAGGACAT 658
consensus_3178#1      CTCAGATCCCTTT-----CGAGCAGTATATTCGCTTCTCT----ACATCTCTATGTGTAC 330
                           * ** *       ******* * *  *  *   *     * ** *  * *   * 

consensus_3178#0      GCTGTCCCTGAAACGGAATGTGTTGTTCAACAAGCTGACATCCTTTGAGTCGGAGGGTAG 718
consensus_3178#1      GCT----------TGAAATTTGTGTCTC------CT--CGCCTTTTACAACACAGGGTAG 372
                      ***           * *** ***   **      **  *  * ***    *  *******

consensus_3178#0      CATTGCGATGCAAGATTCATCTGGGACATTATCTGTCGCTAGTGACGTTTTGCCGCAACA 778
consensus_3178#1      CATTGCGATGCAAGATTCATCTGGGACATTATCTGTCGCTAGTGACGTTTTGCCGCAACA 432
                      ************************************************************

consensus_3178#0      GCAATCCGGTGACTTTTTGGCTACCTCTATCCCTTGCCGTTCGACGGTGTCGGATACCGA 838
consensus_3178#1      GCAATCCGGTGACTTTTTGGCTACCTCTATCTCTTGCCGTTCGACGGTGTCGGATACCGA 492
                      ******************************* ****************************

consensus_3178#0      GTATGAGAAATTTCCGAAAAGCTCCACCCTGAAGGACGCAAAAAAGATGGCGGGTGGTAT 898
consensus_3178#1      GTATGAGAAATTTCCGAAAAGCTCCACCCTGAAGGACGCAAAAAAGATGGCGGGTGGTAT 552
                      ************************************************************

consensus_3178#0      ATTTTCCGGCAAGTCATCACTAAGTGCGGGCTTTCGCTACACTGGCGGCAGCCTAATTCC 958
consensus_3178#1      ATTTTCCGGCAAGTCATCACTAAGTGCGGGCTTTCGCTACACTGGCGGCAGCCTAATTCC 612
                      ************************************************************

consensus_3178#0      GTCGTCCGGGTCGCCTTCGCCGGATGCGCCCCGGGTGTATCTGTTCGAGGGGCTGCTAGG 1018
consensus_3178#1      GTCGTCCGGGTCGCCTTCGCCGGATGCGCCCCGGGTGTATCTGTTCGAGGGGCTGCTAGG 672
                      ************************************************************

consensus_3178#0      TAAGGATCGGTCCAGCATCTGGGACCAGATGCAGTTCTGGGAAGACGCGTTCCTGGACGC 1078
consensus_3178#1      TAAGGATCGGTCCAGCATCTGGGAC----------------------------------- 697
                      *************************                                   

consensus_3178#0      GGTCAGCCAGGAGCGGGACATGATCGGCATGGATCA 1114
consensus_3178#1      ------------------------------------
                                                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)