cluster # 318

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 318 cluster # 318 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_318#0 length = 489 sequences # 1

consensus_318#1 length = 202 sequences # 1

consensusID : consensus_318#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 489
fasta sequence

                              [CCGGATCGGCGTGCCAAATGCGACATCGTTTCGTTTCGTGTGCCTGATGATCATCCACTGCTCGGTGTGTCTTGCAGCTGCTGTTGACCACGTCCGACAGTGTGTGCAGTGTTGATTGTGTGTGTGTGCGTATTGTTGTGTGTGTGTTGTAAGATGATCGGTGCGATCGTTGTTAAAGCGTTTCGATCGTACGGCAGCTAGGGTGGAATTGGGGCTTTGAGTTCCCAATTTTCCCTGTTTTCAAGCAACAAGCAGAAGCCTCCCAGGATTCGAAGGCGAGCACGCCTTGCTTCCGACCTTCCACCCCTCCCCAAAAAGTTGGCTGTGTTGGCGTGTACTACTACTACTACGATCAGAAGTTAATGTGTGTGGGAGTGTTATTACTACTAGCCAAAACGGTGAATTGTTGATCATATAGTGCATTAAGTTTGTTTTTTACTGTGGGAAAATAGAGTGAGAAAAGGAGTGAAACAAGAAAACACCCCACGT]

[+] EMBL BM625932             [CCGGATCGGCGTGCCAAATGCGACATCGTTTCGTTTCGTGTGCCTGATGATCATCCACTGCTCGGTGTGTCTTGCAGCTGCTGTTGACCACGTCCGACAGTGTGTGCAGTGTTGATTGTGTGTGTGTGCGTATTGTTGTGTGTGTGTTGTAAGATGATCGGTGCGATCGTTGTTAAAGCGTTTCGATCGTACGGCAGCTAGGGTGGAATTGGGGCTTTGAGTTCCCAATTTTCCCTGTTTTCAAGCAACAAGCAGAAGCCTCCCAGGATTCGAAGGCGAGCACGCCTTGCTTCCGACCTTCCACCCCTCCCCAAAAAGTTGGCTGTGTTGGCGTGTACTACTACTACTACGATCAGAAGTTAATGTGTGTGGGAGTGTTATTACTACTAGCCAAAACGGTGAATTGTTGATCATATAGTGCATTAAGTTTGTTTTTTACTGTGGGAAAATAGAGTGAGAAAAGGAGTGAAACAAGAAAACACCCCACGT]




>consensus_318#0
CCGGATCGGCGTGCCAAATGCGACATCGTTTCGTTTCGTGTGCCTGATGATCATCCACTG
CTCGGTGTGTCTTGCAGCTGCTGTTGACCACGTCCGACAGTGTGTGCAGTGTTGATTGTG
TGTGTGTGCGTATTGTTGTGTGTGTGTTGTAAGATGATCGGTGCGATCGTTGTTAAAGCG
TTTCGATCGTACGGCAGCTAGGGTGGAATTGGGGCTTTGAGTTCCCAATTTTCCCTGTTT
TCAAGCAACAAGCAGAAGCCTCCCAGGATTCGAAGGCGAGCACGCCTTGCTTCCGACCTT
CCACCCCTCCCCAAAAAGTTGGCTGTGTTGGCGTGTACTACTACTACTACGATCAGAAGT
TAATGTGTGTGGGAGTGTTATTACTACTAGCCAAAACGGTGAATTGTTGATCATATAGTG
CATTAAGTTTGTTTTTTACTGTGGGAAAATAGAGTGAGAAAAGGAGTGAAACAAGAAAAC
ACCCCACGT

consensusID : consensus_318#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 202
fasta sequence

                              [TTTATTGTTTTGATTTTACTGTAAAGCACACTCGCGTACAACAACAAAACACTCACATAAAACGCACTTGCACACACACACGCACAATTAAACGCACTCCCGCTTAGGATCTTAGAGACCACGTGGTTATATTCGGGCTGTGTTAACGTTGGGTGTTTTCTTGTTTCACTCCTTTTCTCACTCTTTTTTCCCACTGTTACAA]

[+] EMBL CNS09FN8             [TTTATTGTTTTGATTTTACTGTAAAGCACACTCGCGTACAACAACAAAACACTCACATAAAACGCACTTGCACACACACACGCACAATTAAACGCACTCCCGCTTAGGATCTTAGAGACCACGTGGTTATATTCGGGCTGTGTTAACGTTGGGTGTTTTCTTGTTTCACTCCTTTTCTCACTCTTTTTTCCCACTGTTACAA]




>consensus_318#1
TTTATTGTTTTGATTTTACTGTAAAGCACACTCGCGTACAACAACAAAACACTCACATAA
AACGCACTTGCACACACACACGCACAATTAAACGCACTCCCGCTTAGGATCTTAGAGACC
ACGTGGTTATATTCGGGCTGTGTTAACGTTGGGTGTTTTCTTGTTTCACTCCTTTTCTCA
CTCTTTTTTCCCACTGTTACAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_318#0      CCGGATCGGCGTGCCAAATGCGACATCGTTTCGTTTCGTGTGCCTGATGATCATCCACTG 60
consensus_318#1      ------------------------------------------------------------
                                                                                 

consensus_318#0      CTCGGTGTGTCTTGCAGCTGCTGTTGACCACGTCCGACAGTGTGTGCAGTGTTGATTGTG 120
consensus_318#1      ------------------------------------------------------------
                                                                                 

consensus_318#0      TGTGTGTGCGTATTGTTGTGTGTGTGTTGTAAGATGATCGGTGCGATCGTTGTTAAAGCG 180
consensus_318#1      ------------------------------------------------------------
                                                                                 

consensus_318#0      TTTCGATCGTACGGCAGCTAGGGTGGAATTGGGGCTTTGAGTTCCCAATTTTCCCTGTTT 240
consensus_318#1      --------------------------------------------------TTTATTGTTT 10
                                                                       **   *****

consensus_318#0      TCAAGCAACAAGCAGAAGCCTCCCAGGATTCGAAGGCGAGCACGCCTTGCTTCCGACCTT 300
consensus_318#1      TGATTTTACT-GTAAAGCACACTCGCGTACAACAACAAAACACTCACATAAAACGCACTT 69
                     * *    **  * * *   * * *  *      *    * *** *        **  ***

consensus_318#0      CCACCCCTCCCCAAAAAGTTGGCTGTGTTGGCGTGTACTACTACTACTACGATCAGAAGT 360
consensus_318#1      GCACACACACACGCACAATTAAACGCACTCCCGC---TTAGGATCTTAGAGACCACGTGG 126
                      *** *   * *  * * **    *   *  **     **  *       ** **   * 

consensus_318#0      TAATGTGTGTGGGAGTGTTATTACTACTAGCCAAAACGGTGAATTGTTGATCATATAGTG 420
consensus_318#1      TTATATTCG-GGCTGTGTTAACGTTG--------GGTGTTTTCTTGTT--TCACTCCTTT 175
                     * ** *  * **  ******    *            * *   *****  ***     * 

consensus_318#0      CATTAAGTTTGTTTTTTACTGTGGGAAAATAGAGTGAGAAAAGGAGTGAAACAAGAAAAC 480
consensus_318#1      TCTCACTCTTTTTTCCCACTGTTACAA--------------------------------- 202
                       * *   ** ***   *****   **                                 

consensus_318#0      ACCCCACGT 489
consensus_318#1      ---------