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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3184#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1050 fasta sequence
[CCGCGGACGCGTGGGGCCCGTCAACTGGGTGGACCCGGATCGGCACCGGACTCACCGCGACCGAAAGTGATCTGGACGTCGGAGTTGCGGCGCACGATTCACACGGTACAGAACATCCCGGGACCGCGGGCCGCCATCAAGGATCTGAACGAGATTAATGCGGGAATTTGCGAGGGCTTAACGTATGAGGAAATACAGGAACGGTTCCCGCAAGAGTTTGCGTGGCGCGATCAGGACAAGTTCAAGTACCGATACCCGCACGGGGAATCTTATCTGGATCTGTTGCAGCGCGTCGACAGCGTGGTGCAAGCGCTGCTGACCAATACCGATGTGCTGGTCGTGTCGCACCAGGCCGTGCTGCGGTGTATTATGGCGTACTTCAAGGGTGTTAAGCCAGATGATGTGCCATACATAAACGTGCCGTTGCACACGTTGCTCATAGTGCGATCGTATGGGTACGATTTTGTGGTCGAGACGGTTCCACTAAAGGTGGAATGTGTAGATACTTATCGCATCCAGCCGAAGAACTGCTCCACTAGTCGTACCACGGCCGATGCCCTCACAACCGTACCGGCCCACTTTGATGCGCCCCTTACGCAGCAAATGTCCACGACGATCAGCTAAAGAGACTGCACACAGTCACTAATTCAACCCGCTTGGTCGGAAGTCCTTTGGCATGAGGAGATGCATCACGTTGATAATAGTACTTTAGTGATGGCGATCAACCGTACAACAAACAAACCAACAAAAATCGTAGGAGGTCGTAGTCGTCGTAATTCTGCCTCCTACATCTACATCTCAATTACTCTACCCTCAGGGTTGTTAGTACGCTCCGGCAATACATAACCACAGGAGAAAAGCCACAAACAAAACACGACGACACGTGCTCGCTTTATAAACGCTCAACTATTTTTGTCGGCTACGCCCGCATCGGCTACGGATCTTTCAATATATAAAAACACACAACATAGTTCTTCCAGCAACAGCACAGTTTGTACAAAGCAGTTGGCAAGAGCGGAGCACGTTGCACGTTTGCGCAGTTTTAGGATG]
[+] EMBL BM630523 [CCGCGGACGCGTGGGGCCCGTCAACTGGGTGGACCCGGATCGGCACCGGACTCACCGCGACCGAAAGTGATCTGGACGTCGGAGTTGCGGCGCACGATTCACACGGTACAGAACATCCCGGGACCGCGGGCCGCCATCAAGGATCTGAACGAGATTAATGCGGGAATTTGCGAGGGCTTAACGTATGAGGAAATACAGGAACGGTTCCCGCAAGAGTTTGCGTGGCGCGATCAGGACAAGTTCAAGTACCGATACCCGCACGGGGAATCTTATCTGGATCTGTTGCAGCGCGTCGACAGCGTGGTGCAAGCGCTGCTGACCAATACCGATGTGCTGGTCGTGTCGCACCAGGCCGTGCTGCGGTGTATTATGGCGTACTTCAAGGGTGTTAAGCCAGATGATGTGCCATACATAAACGTGCCGTTGCACACGTTGCTCATAGTGCGATCGTATGGGTACGATTTTGTGGTCGAGACGGTTCCACTAAAGGTGGAATGTGTAGATACTTATCGCATCCAGCCGAAGAACTGCTCCACTAGTCGTACCACGGCCGATGCCCTCACAACCGTACCGGCCCACTTTGATGCGCCCCTTACGCAGCAAATGTCCACGACGATCAGCTAAAGAGACTGCACACAGTCACTAATTCAACCCGCTTGGTCGGAAGTCCTTTGGCATGAG ]
[+] EMBL BM632958 [ ccgATAAACGTGCCGTTGCACACGTTGCTCATAGTGCGATCGTATGGGTACGATTTTGTGGTCGAGACGGTTCCACTAAAGGTGGAATGTGTAGATACTTATCGCATCCAGCCGAAGAACTGCTCCACTAGTCGTACCACGGCCGATGCCCTCACAACCGTACCGGCCCACTTTGATGCGCCCCTTACGCAGCAAATGTCCACGACGATCAGCTAAAGAGACTGCACACAGTCACTAATTCAACCCGCTTGGTCGGAAGTCCTTTGGCATGAGGAGATGCATCACGTTGATAATAGTACTTTAGTGATGGCGATCAACCGTACAACAAACAAACCAACAAAAATCGTAGGAGGTCGTAGTCGTCGTAATTCTGCCTCCTACATCTACATCTCAATTACTCTACCCTCAGGGTTGTTAGTACGCTCCGGCAATACATAACCACAGGAGAAAAGCCACAAACAAAACACGACGACACGTGCTCGCTTTATAAACGCTCAACTATTTTTGTCGGCTACGCCCGCATCGGCTACGGATCTTTCAATATATAAAAACACACAACATAGTTCTTCCAGCAACAGCACAGTTTGTACAAAGCAGTTGGCAAGAGCGGAGCACGTTGCACGTTTGCGCAGTTTTAGGATG]
consensusID : consensus_3184#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 954 fasta sequence
[GGCAGAATCGGCACGTAGGGTTGATAATAGTACTTTAGTGATGGCGATCAACCGTACAACAAACAAACCAACAAAAATCGTAGGAGGTCGTAGTCGTCGTAATTCTGCCTCCTACATCTACATCTCAATTACTCTACCCTCAGGGGTTGTTAGTACGCTCCGGCAATACATATAACCACAGGAGAAAAGCCACAAACAAAACACGACGACACGTGCTCGCTTTATAAACGCTCAACTATTTTTGTCGGCTACGCCCGCATCGGCTACGGATCTTTCAATATATAAAAACACACAACATAGTTCTTCCAGCAACAGCACAGTTTGTACAAAGCAGTTGGCAAGAGCGGAGCACGTTGCACGTTTGCGCAGTTTTAGGATGCTAATTTTGTGCAACACTGTACGCACACAGAGAGGAGCACCACGGCCTTTTAGAAGATGATGCATTTTGTTAGCGGTGGAAAAAGCCACACAAGAGAGATCCATTAGGCTGCTTATTGTTAATGGTGTCGCAGAGTTGGAAGGCATAATTTGTGGTTAAAAAACACACACACGAAACAACACGAGAGGTTGAACATAACGGTTGTAAAGGCAAATCACACAGGATTTTCACAGTCACAGAGGANATGTTTGATAATCAGCTAATGATGATGATTCAGCACACAAGCAAACACACAAAAAAGGGGGTACAGAAAGAATGATTTCAATTGCATTTCAATTGGCTTTCCGCTTAACGTTAATTAGTGTGTGTGCAAGCCAAGGAAATCCNTGTTTACCNGGGCACACGTCGAAAGTGTCCCTTAAGACACTTTTGGATTCCGGCGGAAGGAGAAAAGACACCTTNCTACCGNAAACACAGTGTTNACAAACCCGGGGGGTTTAAAAAAGCCGACCCCACATAAAGGGGGNAGCAAGGGGGACACTATCACAACATGGGCGGGANCCATTTGGCAGGCG]
[+] EMBL BX467757 [GGCAGAATCGGCACGTAGGGTTGATAATAGTACTTTAGTGATGGCGATCAACCGTACAACAAACAAACCAACAAAAATCGTAGGAGGTCGTAGTCGTCGTAATTCTGCCTCCTACATCTACATCTCAATTACTCTACCCTCAGGGGTTGTTAGTACGCTCCGGCAATACATATAACCACAGGAGAAAAGCCACAAACAAAACACGACGACACGTGCTCGCTTTATAAACGCTCAACTATTTTTGTCGGCTACGCCCGCATCGGCTACGGATCTTTCAATATATAAAAACACACAACATAGTTCTTCCAGCAACAGCACAGTTTGTACAAAGCAGTTGGCAAGAGCGGAGCACGTTGCACGTTTGCGCAGTTTTAGGATGCTAATTTTGTGCAACACTGTACGCACACAGAGAGGAGCACCACGGCCTTTTAGAAGATGATGCATTTTGTTAGCGGTGGAAAAAGCCACACAAGAGAGATCCATTAGGCTGCTTATTGTTAATGGTGTCGCAGAGTTGGAAGGCATAATTTGTGGTTAAAAAACACACACACGAAACAACACGAGAGGTTGAACATAACGGTTGTAAAGGCAAATCACACAGGATTTTCACAGTCACAGAGGANATGTTTGATAATCAGCTAATGATGATGATTCAGCACACAAGCAAACACACAAAAAAGGGGGTACAGAAAGAATGATTTCAATTGCATTTCAATTGGCTTTCCGCTTAACGTTAATTAGTGTGTGTGCAAGCCAAGGAAATCCNTGTTTACCNGGGCACACGTCGAAAGTGTCCCTTAAGACACTTTTGGATTCCGGCGGAAGGAGAAAAGACACCTTNCTACCGNAAACACAGTGTTNACAAACCCGGGGGGTTTAAAAAAGCCGACCCCACATAAAGGGGGNAGCAAGGGGGACACTATCACAACATGGGCGGGANCCATTTGGCAGGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3184#0 CCGCGGACGCGTGGGGCCCGTCAACTGGGTGGACCCGGATCGGCACCGGACTCACCGCGA 60
consensus_3184#1 --------------------------------GGCAGAATCGGCACG-----TAGGGTTG 23
* * ******** * *
consensus_3184#0 CCGAAAGTGATCTGGACGTCGGAGTTGCGGCGCACGATTCACACGGTACAGAACATCCCG 120
consensus_3184#1 ATAATAGTACTTTAG-TGATGGCGATCAACCGTACAACAAACAAACCAACAAAAATCGTA 82
* *** * * * * ** * * ** ** * *** * ** ***
consensus_3184#0 GGACCGCG-GGCCGCCATCAAGGATCTGAACGAGATTAATGCGGGAATTTGCGAGGGCTT 179
consensus_3184#1 GGAGGTCGTAGTCGTCGT-AATTCTGCCTCCTACATCTACATCTCAATTACTCTACCCTC 141
*** ** * ** * * ** * * * ** * **** **
consensus_3184#0 AACGTATGAGGAAATACAGGAACGGTTCCCGCAAGAGTTTGCGTGGCGCGATCAGGACAA 239
consensus_3184#1 AGGGGTTGTTAGTACGCTCCGGCAATACATATAACCACAGGAGAAAAGCCA-CAAACAAA 200
* * ** * * * * * ** * * ** * ** **
consensus_3184#0 GTTCAAGTACCGATACCCGCACGGGGAAT-CTTATCTGGATCTGTTGCAGCGCGTCGACA 298
consensus_3184#1 ACACGACGACACGTGCTCGCTTTATAAACGCTCAACTATTTTTGTCG-GCTACGCCCGCA 259
* * ** * * *** ** ** * ** * *** * ** * **
consensus_3184#0 GCGTGGTGCAAGCGCTGCTGACCAATACCGATGTGCTGGTCGTGTCGCACCAGGCCGTGC 358
consensus_3184#1 TCG-GCTACGGAT-CTTTCAAT--ATATAAAAACACACAACATAGTTCTTCCAGCAACAG 315
** * * * ** * *** * * * * * * **
consensus_3184#0 TGCGGTGTATTATGGCGTACTTCAAGGGTGTTAAGCCAGATGATGTGCCATACATAAACG 418
consensus_3184#1 CACAGTTTGT-ACAAAGCAGTTGGCAAGAGCGGAGC--------ACGTTGCACGTTTGCG 366
* ** * * * * * ** * * *** * ** * **
consensus_3184#0 TGCCGTTGCACACGTTGCTCATAGTGCGATCGTATGGGTACGATTTTGTGGTCGAGACGG 478
consensus_3184#1 CAGTTTTAGG-ATGCTAATTTT-GTGCAACACTGTACGCACACAGAGAGGAGCACCACGG 424
** * * * * * **** * * * * ** * * ****
consensus_3184#0 TTCCACTAAAGGTGGAATGTGTAGATACTTATCGCATCCAGC-CGAAGAACTGCTCCACT 537
consensus_3184#1 CCTTTTAGAAGATGATGCATTTTGTTAGCGGTGGAAAAAGCCACACAAGAGAGATCCATT 484
*** ** * * * ** * * * * * * * * **** *
consensus_3184#0 AGTCGTACCACGGCCGATGCCCTCACAACCGTACC-GGCCCACTTTGATGCGCCCCTTAC 596
consensus_3184#1 AGGCTGCTTATTGTTAATGGTGTCGCAGAGTTGGAAGGCATAATTTGTGGT--------- 535
** * * * *** ** ** * *** * **** *
consensus_3184#0 GCAGCAAATGTCCACGACGATCAGCTAAAGAGACTGCACACAGTCACTAATTCAACCCGC 656
consensus_3184#1 -TAAAAAACACACACACGAAACAACACGAGAGGTTGAACATAA-CGGTTGTAAAGGCAAA 593
* *** *** * ** * **** ** *** * * * * * *
consensus_3184#0 TTGGTCGGAAGTCCTTTGGCATGAGGAGATGCATCACGTTGATAATAGTACTTTAGTGAT 716
consensus_3184#1 TCACACAGGATTTTCACAGTCACAGAGGANATGT----TTGATAATCA---GCTAATGAT 646
* * * * * * ** ** * ******** ** ****
consensus_3184#0 GGCGATCAACCGTACAACAAACAAACCAACAAAAATCGTAGGA-GGTCGTAGTCGTCGTA 775
consensus_3184#1 GATGATTCAGCACACAA---GCAAACACACAAAAAAGGGGGTACAGAAAGAATGATTTCA 703
* *** * * **** ***** ******* * * * * * * * *
consensus_3184#0 ATTCTGCCTCCTACATCTACATCTCAATTACTCTACCCTCAGGGTTGTTAGTACGCTCCG 835
consensus_3184#1 ATTGCATTTCA---ATTGGCTTTCCGCTTAACGT-TAATTAGTGT-GTGTGCAAGCCAAG 758
*** ** ** * * * *** * * ** ** ** * * ** *
consensus_3184#0 GCAATACATAACCACAGGAGAAAAGCCACAAACAAAACACGACGACACGTGCTCGCTTTA 895
consensus_3184#1 GAAATCCNTGTTTACCNGGGCACACGTCGAAAGTGTCCCTTAAGACACTTTTGGATTCCG 818
* *** * * ** * * * * *** * * ***** * *
consensus_3184#0 T--AAACGCTCAACTATTTTTGTCGGCTACGCCCGCATCGGCTACGGATCTTTCAA-TAT 952
consensus_3184#1 GCGGAAGGAGAAAAGACACCTTNCTACCGNAAACACAGTGTTNACAAACCCGGGGGGTTT 878
** * ** * * * * * ** * ** * * * *
consensus_3184#0 ATAAAAAC--ACACAACATAGTTCTTCCAGCAACAGCACAGTTTGTACAAAGCAGTTGGC 1010
consensus_3184#1 AAAAAAGCCGACCCCACATAAAGGGGGNAGCAAGGGGGACACTATCACAACATGGGCGGG 938
* **** * ** * ***** ***** * * **** * **
consensus_3184#0 AAGAGCGGAGCACGTTGCACGTTTGCGCAGTTTTAGGATG 1050
consensus_3184#1 ANCCATTTGGCAGGCG------------------------ 954
* *** *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||