cluster # 3192

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Anopheles gambiae
cluster # 3192 cluster # 3192 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3192#0 length = 821 sequences # 2

consensus_3192#1 length = 691 sequences # 1

consensusID : consensus_3192#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 821
fasta sequence

                              [CCGCCCACGCGTCCGATTGAAGTACTGGGAAACGAGCATTTAAAAACACACGAAATTACGTCTTAACCGGAGAAATATACAATCAGAAAGAGGAAAACCTCTCCCCTCCCAATTAACAAACAACAATTAATAGTTAAAAAAATAAACACAGCACCGTCATCAGTAGAAAAACTTACCAAATTGCCAAGTATTTGAAATGGACAGCCCCATACACACTCACACAACCTGGAAGTAATCCACAAGTAATCGACATCAACCCAATGGCATGGCGGCAAAACGCTCTATTGTAACTCTATCGAAATAAACCATCTGTAACATTTGTCCGTGTGTGTGTGTGTGTGCGTGTGAGTGTATGGTAATTAAACAATGGAAACGATTTAACAGACAAGGCAAGACACGAGAGCAGGACAAACGCGTGGCAAACCAAAACCCAAGGAGCGTAAG-GAAATAGTATATTTTATCGAGCATGCAGACATTCGAGCGCGCTAGCAGGAAAGTCGCACAGAGCGCGCACCAACGCAGCTAAAATTATTGGAAGCAGTGGTTCTGTCAGCAGAACAGGCTGGCGCTGGCGGTTGGCCAATTATACAGGACGCGAAACGGACAAACTAAATGTGACGAGGAAACCATAGATAACCTGAAACGGACGCAAGCAAAGAGTTTGGGAAAGGCGAACAGCGCAGGATAGGTTCCACGAGGGATGGGGAAAGGTAGTGTAGTTCAGCGAGCTACCGTAGCATGTAAGCCTATAGAGCAATTTTCGAAATTGATACGAGACACAGAGAGAGAGGGAGAGAGCGAGAAACGGAGAAACAGAGAGT]

[+] EMBL BM629850             [CCGCCCACGCGTCCGATTGAAGTACTGGGAAACGAGCATTTAAAAACACACGAAATTACGTCTTAACCGGAGAAATATACAATCAGAAAGAGGAAAACCTCTCCCCTCCCAATTAACAAACAACAATTAATAGTTAAAAAAATAAACACAGCACCGTCATCAGTAGAAAAACTTACCAAATTGCCAAGTATTTGAAATGGACAGCCCCATACACACTCACACAACCTGGAAGTAATCCACAAGTAATCGACATCAACCCAATGGCATGGCGGCAAAACGCTCTATTGTAACTCTATCGAAATAAACCATCTGTAACATTTGTCCGTGTGTGTGTGTGTGTGCGTGTGAGTGTATGGTAATTAAACAATGGAAACGATTTAACAGACAAGGCAAGACACGAGAGCAGGACAAACGCGTGGCAAACCAAAACCCAAGGAGCGTAAG GAAATAGTATATTTTATCGAGCATGCAGACATTCGAGCGCGCTAGCAGGAAAGTCGCACAGAGCGCGCACCAACGCAGCTAAAATTATTGGAAGCAGTGGTTCTGTCAGCAGAACAGGCTGGCGCTGGCGGTTGGCCAATTATACAGGACGCGAAACGGACAAACTAAATGTGACGAGGAAACCATAGATAACCTGAAACGGACGCAAGCAAAGAGTTTGGGAAAGGCGAACAGCGCAGGATAGGTT                                                                                                                                  ]
[+] EMBL BX611199             [                                                                                                                                                                                                                                                                                                                                                                                                                   CAGGACAAACGCGTGGCAAACCAAAACCCAAGGAGCGTAAGTAAAATAGTATATTTTATCGAGCATGCAGGCATTCGAGCGCGCTAGCAGGAAAGTCGCACAGAGCGCGCACCAACGCAGCTAAAATTATTGGAAGCAGTGGTTCTGTCAGCAGAACAGGCTGGCGCTGGCGGTTGGCCAATTATACAGGACGCGAAACGGACAAACTAAATGTGACGAAGAAACCATAGATAACCTGAAACGGACGCAAGCAAAGAGTTTGGGAAAGGCGAACAGCGCAGGATAGGTTCCACGAGGGATGGGGAAAGGTAGTGTAGTTCAGCGAGCTACCGTAGCATGTAAGCCTATAGAGCAATTTTCGAAATTGATACGAGACACAGAGAGAGAGGGAGAGAGCGAGAAACGGAGAAACAGAGAGT]




>consensus_3192#0
CCGCCCACGCGTCCGATTGAAGTACTGGGAAACGAGCATTTAAAAACACACGAAATTACG
TCTTAACCGGAGAAATATACAATCAGAAAGAGGAAAACCTCTCCCCTCCCAATTAACAAA
CAACAATTAATAGTTAAAAAAATAAACACAGCACCGTCATCAGTAGAAAAACTTACCAAA
TTGCCAAGTATTTGAAATGGACAGCCCCATACACACTCACACAACCTGGAAGTAATCCAC
AAGTAATCGACATCAACCCAATGGCATGGCGGCAAAACGCTCTATTGTAACTCTATCGAA
ATAAACCATCTGTAACATTTGTCCGTGTGTGTGTGTGTGTGCGTGTGAGTGTATGGTAAT
TAAACAATGGAAACGATTTAACAGACAAGGCAAGACACGAGAGCAGGACAAACGCGTGGC
AAACCAAAACCCAAGGAGCGTAAGGAAATAGTATATTTTATCGAGCATGCAGACATTCGA
GCGCGCTAGCAGGAAAGTCGCACAGAGCGCGCACCAACGCAGCTAAAATTATTGGAAGCA
GTGGTTCTGTCAGCAGAACAGGCTGGCGCTGGCGGTTGGCCAATTATACAGGACGCGAAA
CGGACAAACTAAATGTGACGAGGAAACCATAGATAACCTGAAACGGACGCAAGCAAAGAG
TTTGGGAAAGGCGAACAGCGCAGGATAGGTTCCACGAGGGATGGGGAAAGGTAGTGTAGT
TCAGCGAGCTACCGTAGCATGTAAGCCTATAGAGCAATTTTCGAAATTGATACGAGACAC
AGAGAGAGAGGGAGAGAGCGAGAAACGGAGAAACAGAGAGT

consensusID : consensus_3192#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 691
fasta sequence

                              [CGAGGCAAGAATCGGCACGATGGGCTCATATTAGCAAACACAATCTCACACAAACTGACACACACACGACACTCCGATTGTACATAATTTTATACAACTCCAACGATACATATGATTAAATCTAACTATATATATACATACTAACATAGATACCTATATCAAAATAGAGAAATTATCAGATTCATACGTTAGGTCCATTGGAGGCGCGGAAAAATCGAACTCATCGCATTCATTCCTATTACACGTGATGTATGATTTCATTGACTCGTGGCGAGAGGAATAGAAGAAATTAATACAGAACAGAACACTCTAGAGTGTTCGTGAAACTACGTTAAAACCACACCTAGTCCTAAATGAGACAGCGATTTAGCAGAAACTTCACTCCAGTTTCAAAACAAAAGTCGATCATATTGAAGTACTGGGAAACGAGCATTTAAAAACACACGAAATTACGTCTTAACCGGAGAAATATACAATCAGAAAGAGGAAAACCTCTCCCCTCCCAATTAACAAACAACAATTTAATAGTTACAANATAAACACAGACCCGTCATCAGTAGAACAAACTTACCCAAATTGCCAAGTATTTGGANATGGACAGCCCATACGACAGCTCACAGCGAAGCCTGGAAGTATTCCACAAGTAATCGACATTCAACCCAATGGGNCATGGCGGGCAAAACGGGCTGCT]

[+] EMBL BX467724             [CGAGGCAAGAATCGGCACGATGGGCTCATATTAGCAAACACAATCTCACACAAACTGACACACACACGACACTCCGATTGTACATAATTTTATACAACTCCAACGATACATATGATTAAATCTAACTATATATATACATACTAACATAGATACCTATATCAAAATAGAGAAATTATCAGATTCATACGTTAGGTCCATTGGAGGCGCGGAAAAATCGAACTCATCGCATTCATTCCTATTACACGTGATGTATGATTTCATTGACTCGTGGCGAGAGGAATAGAAGAAATTAATACAGAACAGAACACTCTAGAGTGTTCGTGAAACTACGTTAAAACCACACCTAGTCCTAAATGAGACAGCGATTTAGCAGAAACTTCACTCCAGTTTCAAAACAAAAGTCGATCATATTGAAGTACTGGGAAACGAGCATTTAAAAACACACGAAATTACGTCTTAACCGGAGAAATATACAATCAGAAAGAGGAAAACCTCTCCCCTCCCAATTAACAAACAACAATTTAATAGTTACAANATAAACACAGACCCGTCATCAGTAGAACAAACTTACCCAAATTGCCAAGTATTTGGANATGGACAGCCCATACGACAGCTCACAGCGAAGCCTGGAAGTATTCCACAAGTAATCGACATTCAACCCAATGGGNCATGGCGGGCAAAACGGGCTGCT]




>consensus_3192#1
CGAGGCAAGAATCGGCACGATGGGCTCATATTAGCAAACACAATCTCACACAAACTGACA
CACACACGACACTCCGATTGTACATAATTTTATACAACTCCAACGATACATATGATTAAA
TCTAACTATATATATACATACTAACATAGATACCTATATCAAAATAGAGAAATTATCAGA
TTCATACGTTAGGTCCATTGGAGGCGCGGAAAAATCGAACTCATCGCATTCATTCCTATT
ACACGTGATGTATGATTTCATTGACTCGTGGCGAGAGGAATAGAAGAAATTAATACAGAA
CAGAACACTCTAGAGTGTTCGTGAAACTACGTTAAAACCACACCTAGTCCTAAATGAGAC
AGCGATTTAGCAGAAACTTCACTCCAGTTTCAAAACAAAAGTCGATCATATTGAAGTACT
GGGAAACGAGCATTTAAAAACACACGAAATTACGTCTTAACCGGAGAAATATACAATCAG
AAAGAGGAAAACCTCTCCCCTCCCAATTAACAAACAACAATTTAATAGTTACAANATAAA
CACAGACCCGTCATCAGTAGAACAAACTTACCCAAATTGCCAAGTATTTGGANATGGACA
GCCCATACGACAGCTCACAGCGAAGCCTGGAAGTATTCCACAAGTAATCGACATTCAACC
CAATGGGNCATGGCGGGCAAAACGGGCTGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3192#0      CCGCCCACGCGTCCGATTGAAGTACTGGGAAACGAGCATTTAAAAACACACGAAATTACG 60
consensus_3192#1      ------------------------------------------------------------
                                                                                  

consensus_3192#0      TCTTAACCGGAGAAATATACAATCAGAAAGAGGAAAACCTCTCCCCTCCCA-ATTAACAA 119
consensus_3192#1      -----------------------CGAGGCAAGAATCGGCACGATGGGCTCATATTAGCAA 37
                                             *      ** *    * *      * ** **** ***

consensus_3192#0      ACAACAATTAATAGTTAAAAAAATAAACACAGCACCGTCATCAGTAGAAAAACTTACCAA 179
consensus_3192#1      ACACAATCTCACACAAACTGACACACACACGACACTCCGATT-GTACATAATTTTATACA 96
                      ***  *  * * *   *   * * * ****  ***    **  *** * **  ***   *

consensus_3192#0      ATTGCCAAGTATTTGAAATGGACAGCCCCATACACACTCACACAACCTGGAAGTAATCCA 239
consensus_3192#1      ACT-CCAACGATAC-ATATGATTAAATCTAACTATATATATACATACTAACATAGATACC 154
                      * * ****  **   * ***   *   * *   * *   * ***  **   *   ** * 

consensus_3192#0      CAAGTAATCGACATCAACCCAATGGCATGGCGGCAAAAC-GCTCTATTGTAACTCTATCG 298
consensus_3192#1      TAT---ATCAAAATAGAGAAATTATCAGATTCATACGTTAGGTCCATTGGAGGCGCGGAA 211
                       *    *** * **  *   * *  **       *     * ** **** *         

consensus_3192#0      AAATAAACCATCTGTAACATTTGTCCGTGTGTGTGTGTG-TGTGCG-TGTGAGTGTATGG 356
consensus_3192#1      AAATCGA--ACTCATCGCATTCATTCCTAT-TACACGTGATGTATGATTTCATTGACTCG 268
                      ****  *  *    *  ****  * * * * *    *** ***  * * * * **  * *

consensus_3192#0      TAATTAAACAATGGAAACGATTTAACAGACAAGGCAAGACACGAGAGCAGG-ACAAACGC 415
consensus_3192#1      TGGCGAGAGGAATAGAAGAAATTAATACAGAACAGAACACTCTAGAGTGTTCGTGAAACT 328
                      *    * *  *    **  * **** * * **   ** ** * ****        **   

consensus_3192#0      GTGGCAAACCAAAACCCAAGGAGCGTAAGGAAATAGTATATTTTATCGAGCATGCAGAC- 474
consensus_3192#1      ACGTTAAAACCACACCTA--GTCCTAAATGAGACAGCG-ATTTAGCAGAAACTTCACTCC 385
                        *  *** * * *** *  *  *  ** ** * **   ****    **   * **  * 

consensus_3192#0      -ATTCGAGCGCGCTAGCAGGAAAGTCGCACAGAGCGCGCACCAACGCAGCTAAAATTATT 533
consensus_3192#1      AGTTTCAAAACAAAAGTCGATCATATTGAAGTACTGGGAAACGA-GCATTTAAAAACACA 444
                        **  *   *   **  *   *     *   *  * * * * * ***  *****  *  

consensus_3192#0      GGAAGCAGTGGTTCTGTCAGCAGAACAGGCTGGC-GCTGGCGGTTGGCCAATTATACAGG 592
consensus_3192#1      CGAAATTACGTCTTAACCGGAGAAATATACAATCAGAAAGAGGAAAACCTCTCCCCTCCC 504
                       ***     *  *    * *   ** *  *   * *   * **    **  *        

consensus_3192#0      ACGCGA-AACGGACAAACTAAATGTGACGAGGAAACCATAGAT--AACCTGAAACGGACG 649
consensus_3192#1      AATTAACAAACAACAATTTAATAGTTACAANATAAACACAGACCCGTCATCAGTAGAACA 564
                      *    * **   ****  ***  ** ** *   ** ** ***     * * *   * ** 

consensus_3192#0      CAAGCAAAGAGTTTGGGAAAGGCGAACAGCGCAGGATAGGTTCCACGAGGG---ATGGGG 706
consensus_3192#1      AACTTACCCAAATTGCCAA--GTATTTGGANATGGACAGCCCATACGACAGCTCACAGCG 622
                       *   *   *  ***  **  *      *    *** **     ****  *   *  * *

consensus_3192#0      AAAGGTAGTGTAGTTCAGCGAGCTACCGTAGCATGTAAGCCTATAGAGCAATTTTCGAAA 766
consensus_3192#1      AAGCCTGGAAGTATTCCACAAGTAATCG--ACATTCAACCCAATGGGNCA----TGGCGG 676
                      **   * *     ***  * **  * **   ***  ** ** ** *  **    * *   

consensus_3192#0      TTGATACGAGACACAGAGAGAGAGGGAGAGAGCGAGAAACGGAGAAACAGAGAGT 821
consensus_3192#1      GCAAAACGGGCTGCT---------------------------------------- 691
                         * *** *   *