cluster # 3197

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Anopheles gambiae
cluster # 3197 cluster # 3197 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3197#0 length = 1147 sequences # 2

consensus_3197#1 length = 112 sequences # 1

consensusID : consensus_3197#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1147
fasta sequence

                              [ACGCTAATCTGTCAATAGCGACCGCTTTGTTCTTAAATTTCGTTACGAATCCCTATTATCACATCAAGATGGGTAGGGAGGACAAAGCAACCTGGAAGTCCAACTATTTCCTAAAAGTCGTGCAACTGCTCGACGAATACCCGAGATGTTTCATCGTCGGCGCTGACAATGTCGGCTCCCGTCAGATGCAAACCATCCGTATGTCGCTCCGCGGTTCGGCCATCGTGCTGATGGGCAAGAACACCATGATGCGCAAGGCCATCCGCGGGCATCTGGAGAACAACCAGAACCTGGAGAAGCTGCTCAACCACATCAAGGGCAACGTGGGCTTCGTGTTCACCAAGGGCGATCTGGCCGAGATCCGCGACAAGCTGACCGAGAGCAAGGTGCGTGCCCCGGCCCGTGCCGGTGCGATCGCCCCGCTCGAGGTCGGCGCTTCCGAGGCCACGCTGCTCAACATGCTGAACATCTCGCCGTTCTCGTACGGTCTGCAGATCCAGCAGGTGTACGATTCGGGCTCGATCTTCTCGCCGGAAATCCTCGACATCAAGGCGGAGGATCTGCGCGCCAAGTTCCAGGCTGGAGTCGCCAACCTGGCTGCCGTGTCGCTCCAGATCGGATACCCGACGCTGGCTTCGGTGCCGCACAGCATTGCCAACGGTTTCCGCAACCTGCTGGCCATTGCCGCCGTCACCGAGGTTGAGTTCAAGGAGGCCGAAACGGTCAAGGAGTTCATCAAGGATCCGAGCAAGTTCGCCGCTGCCACGGCAACGACTGCTTCCGCTGCCGCCCCAGCTGCCAAGGCTGAGGAGAAGAAGGTGGAGTCCGAGTCCGAGGATGAGGATGAGGATATGGGCTTCGGTCTGTTCGATTAAATGCGACA-CAAGAACGACGACCCACGCCGACCGCATGCGCCA-CAGCCAGGTCGGTTGTTCCCAGACGGTGTGGTTCCCTGAGCTATATCTACTTTGGCACGGACGTTGTAGCTGCGAGCGTATACTCGTCAAGGCTGGGGACGGCCCAATGGCGACACGCTGGCCATTCTTCTTGTTACGTACCAAAATACGTATTTTTCTGTGAAACCAACTGAAGAGCAAAGCACATTAAAAGTGACACAAAAGCCGGTGAGTCAGAATCGCAAGAGGAA]

[+] EMBL CNS08F2V             [ACGCTAATCTGTCAATAGCGACCGCTTTGTTCTTAAATTTCGTTACGAATCCCTATTATCACATCAAGATGGGTAGGGAGGACAAAGCAACCTGGAAGTCCAACTATTTCCTAAAAGTCGTGCAACTGCTCGACGAATACCCGAGATGTTTCATCGTCGGCGCTGACAATGTCGGCTCCCGTCAGATGCAAACCATCCGTATGTCGCTCCGCGGTTCGGCCATCGTGCTGATGGGCAAGAACACCATGATGCGCAAGGCCATCCGCGGGCATCTGGAGAACAACCAGAACCTGGAGAAGCTGCTCAACCACATCAAGGGCAACGTGGGCTTCGTGTTCACCAAGGGCGATCTGGCCGAGATCCGCGACAAGCTGACCGAGAGCAAGGTGCGTGCCCCGGCCCGTGCCGGTGCGATCGCCCCGCTCGAGGTCGGCGCTTCCGAGGCCACGCTGCTCAACATGCTGAACATCTCGCCGTTCTCGTACGGTCTGCAGATCCAGCAGGTGTACGATTCGGGCTCGATCTTCTCGCCGGAAATCCTCGACATCAAGGCGGAGGATCTGCGCGCCAAGTTCCAGGCTGGAGTCGCCAACCTGGCTGCCGTGTCGCTCCAGATCGGATACCCGACGCTGGCTTCGGTGCCGCACAGCATTGCCAACGGTTTCCGCAACCTGCTGGCCATTGCCGCCGTCACCGAGGTTGAGTTCAAGGAGGCCGAAACGGTCAAGGAGTTCATCAAGGATCCGAGCAAGTTCGCCGCTGCCACGGCAACGACTGCTTCCGCTGCCGCCCCAGCTGCCAAGGCTGAGGAGAAGAAGGTGGAGTCCGAGTCCGAGGATGAGGATGAGGATATGGGCTTCGGTCTGTTCGATTAAATGCGACA CAAGAACGACGACCCACGCCGACCGCATGCGCCA CAGCCAGGTCGGTTGTTCCCAGACGGTGTGGTTCCCTGAGCTATATCTACTTTGG                                                                                                                                                                               ]
[-] EMBL CNS08F2W             [                                                                                                                                                                                  CCGTAAGATGCAAACCATCCGTTTTGCTCTCCGCGGTTCGGCCATCGTGCTGATGGGCAAGAACACCATGATGCGCAAGGCCATCCGCGGGCATCTGGAGAACAACCAGAACCTGGAGAAGCTGCTCAACCACATCAAGGGCAACGTGGGCTTCGTGTTCACCAAGGGCGATCTGGCCGAGATCCGCGAAAAGCTGACCGAGAGCAAGGTGCGTGCCCCGGCCCGTGCCGGTGCGATCGCCCCGCTCGAGGTCGGCGCTTCCGAGGCCACGCTGCTCAACATGCTGAACATCTCGCCGTTCTCGTACGGTCTGCAGATCCAGCAGGTGTACGATTCGGGCTCGATCTTCTCGCCGGAAATCCTCGACATCAAGGCGGAGGATCTGCGCGCCAAGTTCCAGGCTGGAGTCGCCAACCTGGCTGCCGTGTCGCTCCAGATCGGATACCCGACGCTGGCTTCGGTGCCGCACAGCATTGCCAACGGTTTCCGCAACCTGCTGGCCATTGCCGCCGTCACCGAGGTTGAGTTCAAGGAGGCCGAAACGGTCAAGGAGTTCATCAAGGATCCGAGCAAGTTCGCCGCTGCCACGGCAACGACTGCTTCCGCTGCCGCCCCAGCTGCCAAGGCTGAGGAGAAGAAGGTGGAGTCCGAGTCCGAGGATGAGGATGAGGATATGGGCTTCGGTCTGTTCGATTAAATGCGACAGCAAG ACGACGACCCACGCCGACCGCATGCGCCAGCAG CAGGTCGGTTGTTCCCAGACGGTGTGGTTCCCTGAGCTATATCTACTTTGGCACGGACGTTGTAGCTGCGAGCGTATACTCGTCAAGGCTGGGGACGGCCCAATGGCGACACGCTGGCCATTCTTCTTGTTACGTACCAAAATACGTATTTTTCTGTGAAACCAACTGAAGAGCAAAGCACATTAAAAGTGACACAAAAGCCGGTGAGTCAGAATCGCAAGAGGAA]




>consensus_3197#0
ACGCTAATCTGTCAATAGCGACCGCTTTGTTCTTAAATTTCGTTACGAATCCCTATTATC
ACATCAAGATGGGTAGGGAGGACAAAGCAACCTGGAAGTCCAACTATTTCCTAAAAGTCG
TGCAACTGCTCGACGAATACCCGAGATGTTTCATCGTCGGCGCTGACAATGTCGGCTCCC
GTCAGATGCAAACCATCCGTATGTCGCTCCGCGGTTCGGCCATCGTGCTGATGGGCAAGA
ACACCATGATGCGCAAGGCCATCCGCGGGCATCTGGAGAACAACCAGAACCTGGAGAAGC
TGCTCAACCACATCAAGGGCAACGTGGGCTTCGTGTTCACCAAGGGCGATCTGGCCGAGA
TCCGCGACAAGCTGACCGAGAGCAAGGTGCGTGCCCCGGCCCGTGCCGGTGCGATCGCCC
CGCTCGAGGTCGGCGCTTCCGAGGCCACGCTGCTCAACATGCTGAACATCTCGCCGTTCT
CGTACGGTCTGCAGATCCAGCAGGTGTACGATTCGGGCTCGATCTTCTCGCCGGAAATCC
TCGACATCAAGGCGGAGGATCTGCGCGCCAAGTTCCAGGCTGGAGTCGCCAACCTGGCTG
CCGTGTCGCTCCAGATCGGATACCCGACGCTGGCTTCGGTGCCGCACAGCATTGCCAACG
GTTTCCGCAACCTGCTGGCCATTGCCGCCGTCACCGAGGTTGAGTTCAAGGAGGCCGAAA
CGGTCAAGGAGTTCATCAAGGATCCGAGCAAGTTCGCCGCTGCCACGGCAACGACTGCTT
CCGCTGCCGCCCCAGCTGCCAAGGCTGAGGAGAAGAAGGTGGAGTCCGAGTCCGAGGATG
AGGATGAGGATATGGGCTTCGGTCTGTTCGATTAAATGCGACACAAGAACGACGACCCAC
GCCGACCGCATGCGCCACAGCCAGGTCGGTTGTTCCCAGACGGTGTGGTTCCCTGAGCTA
TATCTACTTTGGCACGGACGTTGTAGCTGCGAGCGTATACTCGTCAAGGCTGGGGACGGC
CCAATGGCGACACGCTGGCCATTCTTCTTGTTACGTACCAAAATACGTATTTTTCTGTGA
AACCAACTGAAGAGCAAAGCACATTAAAAGTGACACAAAAGCCGGTGAGTCAGAATCGCA
AGAGGAA

consensusID : consensus_3197#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 112
fasta sequence

                              [TTTTACTGGGACAACAACCGGGGCAGCAGCAGCAGCAGTTACGGCACCATCACCGTTCCGCCGTTTTACTTTTTGACGGCCTGTCCGACCTTGGCCTTTTTCGGGCCGCGCA]

[+] EMBL CNS091SQ             [TTTTACTGGGACAACAACCGGGGCAGCAGCAGCAGCAGTTACGGCACCATCACCGTTCCGCCGTTTTACTTTTTGACGGCCTGTCCGACCTTGGCCTTTTTCGGGCCGCGCA]




>consensus_3197#1
TTTTACTGGGACAACAACCGGGGCAGCAGCAGCAGCAGTTACGGCACCATCACCGTTCCG
CCGTTTTACTTTTTGACGGCCTGTCCGACCTTGGCCTTTTTCGGGCCGCGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3197#0      ACGCTAATCTGTCAATAGCGACCGCTTTGTTCTTAAATTTCGTTACGAATCCCTATTATC 60
consensus_3197#1      ------------------------------------------------------------
                                                                                  

consensus_3197#0      ACATCAAGATGGGTAGGGAGGACAAAGCAACCTGGAAGTCCAACTATTTCCTAAAAGTCG 120
consensus_3197#1      ------------------------------------------------------------
                                                                                  

consensus_3197#0      TGCAACTGCTCGACGAATACCCGAGATGTTTCATCGTCGGCGCTGACAATGTCGGCTCCC 180
consensus_3197#1      ------------------------------------------------------------
                                                                                  

consensus_3197#0      GTCAGATGCAAACCATCCGTATGTCGCTCCGCGGTTCGGCCATCGTGCTGATGGGCAAGA 240
consensus_3197#1      ------------------------------------------------------------
                                                                                  

consensus_3197#0      ACACCATGATGCGCAAGGCCATCCGCGGGCATCTGGAGAACAACCAGAACCTGGAGAAGC 300
consensus_3197#1      ------------------------------------------------------------
                                                                                  

consensus_3197#0      TGCTCAACCACATCAAGGGCAACGTGGGCTTCGTGTTCACCAAGGGCGATCTGGCCGAGA 360
consensus_3197#1      -----------------------------------TTTTACTGGGACAAC--AACCGGGG 23
                                                         **   *  ** * *     *** * 

consensus_3197#0      TCCGCGACAAGCTGACCGAGAGCAAGGTGCGTGCCCCGGCCCGTGCCGGTGCGATCGCCC 420
consensus_3197#1      -CAGCAGCAGCAGCAGTTACGGCACCATCACCGTTCCGCCGTTTTACTTTTTGA-CGGCC 81
                       * **  **     *   *  ***   *    *  *** *   *  *  *  ** ** **

consensus_3197#0      CGCTCGAGGTCGGCGCTTCCGAGGCCACGCTGCTCAACATGCTGAACATCTCGCCGTTCT 480
consensus_3197#1      TGTCCGACCTTGGCCTTTTTCGGGCCGCGCA----------------------------- 112
                       *  ***  * ***  **    **** ***                              

consensus_3197#0      CGTACGGTCTGCAGATCCAGCAGGTGTACGATTCGGGCTCGATCTTCTCGCCGGAAATCC 540
consensus_3197#1      ------------------------------------------------------------
                                                                                  

consensus_3197#0      TCGACATCAAGGCGGAGGATCTGCGCGCCAAGTTCCAGGCTGGAGTCGCCAACCTGGCTG 600
consensus_3197#1      ------------------------------------------------------------
                                                                                  

consensus_3197#0      CCGTGTCGCTCCAGATCGGATACCCGACGCTGGCTTCGGTGCCGCACAGCATTGCCAACG 660
consensus_3197#1      ------------------------------------------------------------
                                                                                  

consensus_3197#0      GTTTCCGCAACCTGCTGGCCATTGCCGCCGTCACCGAGGTTGAGTTCAAGGAGGCCGAAA 720
consensus_3197#1      ------------------------------------------------------------
                                                                                  

consensus_3197#0      CGGTCAAGGAGTTCATCAAGGATCCGAGCAAGTTCGCCGCTGCCACGGCAACGACTGCTT 780
consensus_3197#1      ------------------------------------------------------------
                                                                                  

consensus_3197#0      CCGCTGCCGCCCCAGCTGCCAAGGCTGAGGAGAAGAAGGTGGAGTCCGAGTCCGAGGATG 840
consensus_3197#1      ------------------------------------------------------------
                                                                                  

consensus_3197#0      AGGATGAGGATATGGGCTTCGGTCTGTTCGATTAAATGCGACACAAGAACGACGACCCAC 900
consensus_3197#1      ------------------------------------------------------------
                                                                                  

consensus_3197#0      GCCGACCGCATGCGCCACAGCCAGGTCGGTTGTTCCCAGACGGTGTGGTTCCCTGAGCTA 960
consensus_3197#1      ------------------------------------------------------------
                                                                                  

consensus_3197#0      TATCTACTTTGGCACGGACGTTGTAGCTGCGAGCGTATACTCGTCAAGGCTGGGGACGGC 1020
consensus_3197#1      ------------------------------------------------------------
                                                                                  

consensus_3197#0      CCAATGGCGACACGCTGGCCATTCTTCTTGTTACGTACCAAAATACGTATTTTTCTGTGA 1080
consensus_3197#1      ------------------------------------------------------------
                                                                                  

consensus_3197#0      AACCAACTGAAGAGCAAAGCACATTAAAAGTGACACAAAAGCCGGTGAGTCAGAATCGCA 1140
consensus_3197#1      ------------------------------------------------------------
                                                                                  

consensus_3197#0      AGAGGAA 1147
consensus_3197#1      -------