These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3198#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [GCATTTTTATTCTTCCTCTCGCGTTCTCAGTGTTCCAGAAGCACACTTTTAAAAGCAAACTTGAGTACGACGATACACATAATTGTATAAAATAAAACAGGAATACTCCTTTTCCTCCTTCTTCTCCTTCACACAGTGATTAGAGAGTTAGAGAGTGTGTGTTTGTGTGTCTGTGAGTGTGTAAATGCTTGATTGTTTCAGTGTTGTAATGAATTGTTAAACAAATGTGTGTCTCTCTTTCTCTCATCACCATCTTCAACCACAGGGAAAAAGAAATACAATCGACAAAAAAATTGACACATTCACACACACACACACACACACACACGTTCATTGAAAGCTTAAGGTATTAATTTTCCACGCTAATTGTAGCCATGTACTTTACGATTAAAATCACAACTGGCAGTGGTCGATGATAGAAGGTGCGGGCTGGTGGTGGCGGGGTGCTACTAATAAAACACAAAAATGCACATTCACGAAACACGACTCCGCTCCCCTCTTTTCTTGCTTCTCTCTCTCCCCCTCTTCCTCTCACTCTCTCATACCACCTTTCCACTTCCGGCGATCATTACTACTTTGTTCCGATTGCTGGAGAANAGATTAGGATGGAAGCCTCTTCTTCCCCCCTCGCAACTTCTTCATTAATCATGCACACGTACACACATACATACACATGCACACGGTTCAGGGCG] [+] EMBL BX621481 [GCATTTTTATTCTTCCTCTCGCGTTCTCAGTGTTCCAGAAGCACACTTTTAAAAGCAAACTTGAGTACGACGATACACATAATTGTATAAAATAAAACAGGAATACTCCTTTTCCTCCTTCTTCTCCTTCACACAGTGATTAGAGAGTTAGAGAGTGTGTGTTTGTGTGTCTGTGAGTGTGTAAATGCTTGATTGTTTCAGTGTTGTAATGAATTGTTAAACAAATGTGTGTCTCTCTTTCTCTCATCACCATCTTCAACCACAGGGAAAAAGAAATACAATCGACAAAAAAATTGACACATTCACACACACACACACACACACACACGTTCATTGAAAGCTTAAGGTATTAATTTTCCACGCTAATTGTAGCCATGTACTTTACGATTAAAATCACAACTGGCAGTGGTCGATGATAGAAGGTGCGGGCTGGTGGTGGCGGGGTGCTACTAATAAAACACAAAAATGCACATTCACGAAACACGACTCCGCTCCCCTCTTTTCTTGCTTCTCTCTCTCCCCCTCTTCCTCTCACTCTCTCATACCACCTTTCCACTTCCGGCGATCATTACTACTTTGTTCCGATTGCTGGAGAANAGATTAGGATGGAAGCCTCTTCTTCCCCCCTCGCAACTTCTTCATTAATCATGCACACGTACACACATACATACACATGCACACGGTTCAGGGCG] consensusID : consensus_3198#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 674 fasta sequence [CCCCGCGAGTGCACGGCACCATAGTCAATCATTCGAATACACGGTCATCGAAGCAGCAACAAGTCGCGCCACGCGCTAGTGCAACAGGTCATCCCGTACAAGGCTCAGGGCACCCGAAAACCCCCCCCTTTCTCGAATTCTCGAAACCGCGCCTCTTCGTTTACGTCGTCTCCAGCGTGCTAAAGCCCCTCCAGAGCCACCATGCCTTTCAAGCCAGCTGATAACCCCAAGTGCCCCAAGTGCGGCAAGTCGGTGTACGCCGCCGAGGAGCGTGTCGCCGGAGGAAACAAATGGCACAAGCAGTGCTTCAAGTGCGGAATGTGCGGCAAGATGCTCGACTCCACAAACTGTGCAGAGCACGAAAACGAGCTGTACTGCAAGAACTGCCACGGCCGCAAGTACGGACCGAAGGGCTACGGTTTCGGTGGAGGCGCCGGCTGCCTCTCGATGGACACTGGCGCCCAGTTTCAGGGCGAGGGCAAGTAAATGCTCGTGCCACGTGTACTAGCATCACAAACCCGTTCATTTAAGTAAGAGTCCCCCCTGCGGAATAGCGCGAAGAAGCTTGCACCGTGCAGAAACCAAAAACCCAACAACATCTCCATTTGTTTTTGCCAAACGACACGTCGGTCGAGCTCCCCGTCTATTGAGGGAAGTGTGGAAGCGATGAAATT] [+] EMBL BM617314 [ CCGCGAGTGCACGGCACCATAGTCAATCATTCGAATACACGGTCATCGAAGCAGCAACAAGTCGCGCCACGCGCTAGTGCAACAGGTCATCCCGTACAAGGCTCAGGGCACCCGAAAACCCCCCCCTTTCTCGAATTCTCGAAACCGCGCCTCTTCGTTTACGTCGTCTCCAGCGTGCTAAAGCCCCTCCAGAGCCACCATGCCTTTCAAGCCAGCTGATAACCCCAAGTGCCCCAAGTGCGGCAAGTCGGTGTACGCCGCCGAGGAGCGTGTCGCCGGAGGAAACAAATGGCACAAGCAGTGCTTCAAGTGCGGAATGTGCGGCAAGATGCTCGACTCCACAAACTGTGCAGAGCACGAAAACGAGCTGTACTGCAAGAACTGCCACGGCCGCAAGTACGGACCGAAGGGCTACGGTTTCGGTGGAGGCGCCGGCTGCCTCTCGATGGACACTGGCGCCCAGTTTCAGGGCGAGGGCAAGTAAATGCTCGTGCCACGTGTACTAGCATCACAAACCCGTTCATTTAAGTAAGAGTCCCCCCTGCGGAATAGCGCGAAGAAGCTTGCACCGTGCAGAAACCAAAAACCCAACAACATCTCCATTTGTTTTTGCCAAACGACACGTCGGTCGAGCTCCCCGTCTATTGAGGGAAGTGTGGAAGCGATGAAATT] [+] EMBL BM648582 [ccgacCGAGTGCACGGCACCATAGTCAATCATTCGAATACACGGTCATCGAAGCAGCAACAAGTCGCGCCACGCGCTAGTGCAACAGGTCATCCCGTACAAGGCTCAGGGCACCCGAAAA CCCCCCCTTTCTCGAATTCTCGAAACCGCGCCTCTTCGTTTACGTCGTCTCCAGCGTGCTAAAGCCCCTCCAGAGCCACCATGCCTTTCAAGCCAGCTGATAACCCCAAGTGCCCCAAGTGCGGCAAGTCGGTGTACGCCGCCGAGGAGCGTGTCGCCGGAGGAAACAAATGGCACAAGCAGTGCTTCAAGTGCGGAATGTGCGGCAAGATGCTCGACTCCACAAACTGTGCAGAGCACGAAAACGAGCTGTACTGCAAGAACTGCCACGGCCGCAAGTACGGACCGAAGGGCTACGGTTTCGGTGGAGGCGCCGGCTGCCTCTCGATGGACACTGGCGCCCAGTTTCAGGGCGAGGGCAAGTAAATGCTCGTGCCACGTGTACTAGCATCACAAACCCGTTCATTTAAGTAAGAGTCCCCCCTGCGGAATAGCGCGAAGAAGCTTGCACCGTGCAGAAACCAAAAACCCAACAACATCTCCATTTGTTTTTGCCAAACGACACGTCGGTCGAGCTCCCCGTCTATTGAGGGAAGTGTGGAAGCGATGAAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3198#0 GCATTTTTATTCTTCCTCTCGCGTTCTCAGTGTTCCAGAAGCACACTTTTAAAAGCAAAC 60 consensus_3198#1 -CCCCGCGAGTGCACGGCAC-CATAGTCAATCATTCGAATACACGGTCATCGAAGCAGCA 58 * * * * * * * * *** * * * * *** * * ***** consensus_3198#0 TTGAGTACGACGATACACATAATTGTATAAAATAAAACAGGA--ATACTCCTTTTCCTCC 118 consensus_3198#1 ACAAGTC--GCGCCACGCGCTAGTGCAACAGGTCATCCCGTACAAGGCTCAGGGCACCCG 116 *** ** ** * * ** * * * * * * * * *** * * consensus_3198#0 TTCTTCTCCTTCACACAGTGATTAGAGAGTTAGAGAGTGTGTGTTTGTGTGTCTGTGAGT 178 consensus_3198#1 AAAACCCCCCCCTTTCTCGAATTCTCGAAACCGCGCCTCTTCGTTTACGTCGTCTCCAGC 176 * ** * * *** ** * * * * **** ** ** consensus_3198#0 GTGTAAATGCTTGATTGTTTCAGTGTTGTAATGAATTGTTAAACAAATGTGTGTCTCTCT 238 consensus_3198#1 GTGCTAAAGCCC-----CTCCAGAGCCACCATGCCTTTCAAGCCAGCTGATAACCCCAAG 231 *** ** ** * *** * *** ** * ** ** * * consensus_3198#0 TTCTCTCATCACCATCTTCAACCACAGGGAAAAAGAAATACAATCGACAAAAAAATTGAC 298 consensus_3198#1 TGCCCCAAGTGCGGCAAGTCGGTGTACGCCGCCGAGGAGCGTGTCGCCGGAGGAAACAAA 291 * * * * * * * * *** * * ** * consensus_3198#0 ACATTCACACACACACACACACACACACACGTTCATTGAAA-GCTTAAGGTATTAATTTT 357 consensus_3198#1 TGGCACAAGCAGTGCTTCAAGTGCGGA-ATGTGCGGCAAGATGCTCGACTCCACAAACT- 349 ** ** ** * * * ** * * * *** * ** * consensus_3198#0 CCACGCTAATTGTAGCCATGTACTTTACGATTAAAATCACAACTGGCAGTGGTCGATGAT 417 consensus_3198#1 --GTGCAGAGCACGAAAACGAGCTGTACTGCAAGAACTGCCAC-GGCCGCAAGTACGGAC 406 ** * * * ** *** * ** * ** *** * ** consensus_3198#0 AGAAGG--TGCGGGCT-GGTGGTGGCGGGGTGCTACTAATAAAACACAAAAATGCACATT 474 consensus_3198#1 CGAAGGGCTACGGTTTCGGTGGAGGCGCCGGCTGCCTCTCGATGGACACTGGCGCCCAGT 466 ***** * *** * ***** **** * ** * *** ** ** * consensus_3198#0 CACGAAACACGACTCCGCTCCCCTCTTTTCTTGCTTCTCTCTCTCCCCCTCTTCCTCTCA 534 consensus_3198#1 TTCAGGGCGAGG----GCAAGTAAATGCTCGTGCCACGTGTACTAGCA-TCACAAACCCG 521 * * * ** * ** *** * ** * ** * * consensus_3198#0 CTCTCTCATACCACCTTTCCACTTCCGGCGATCATTACTACTTTGTTCCGATTGCTGGAG 594 consensus_3198#1 TTCATTTAAGTAAGAGTCCCCCCTGCGG--AATAGCGCGAAGAAGCTTGCACCG-TGCAG 578 ** * * * * ** * * *** * * * * * * * * ** ** consensus_3198#0 AANAGATTAGGATGGAAGCCTCTTCTTCCCCCCTCGC-AACTTCTTCATTAATCATGCAC 653 consensus_3198#1 AAACCAAAAACCCAACAACATCTCCATTTGTTTTTGCCAAACGACACGTCGGTCGAGCTC 638 ** * * * * *** * * * ** ** * * ** ** * consensus_3198#0 ACGTACACACATACATACACATGCACACGGTTCAGGGCG 692 consensus_3198#1 -CCCGTCTATTGAGGGAAGTGTGGAAGCGATGAAATT-- 674 * * * * ** * ** * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||