These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3208#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 622 fasta sequence [CCGCCCACGCGTCCGAGCGAAACGAAACTCTTTGCACTCGCTTTGTTCGTACACCAGAGACAACGGAACTAATCGTATGCTGTCTCAGAGGTGGCTCCAGATTATTACTGCGCAGCAGATGAATCACTGAATGCAGGACGAATAGAAAACAGACACTTGAACTAGCAAGCCAACTAGCGGAACGATGACTGTAGCATACCTGTAGTAAATAAGAGATATCCGGTAGGTTGAAAATTTCAATCAAACAAATAAGAGTATAGCTAGTAGCCGAACATGAAAGCAACTTGTAGTAAAGCAGAATGCTTCTGACCGTACGTAATCTTGGTAAAAACAGTTAAAAGAATCTGTACAACGAGAATGATACTGTTTAAGAAGAAAGCGAATGCATGCAATACTACCAGCATTCTAGCATTAGAAAGGAAAGGTACGCGTCGTATTCTACCACAAACAACTATCAGTACAGACGAAGAGAAATCGCTAAAACGCCTGGTAATTTGAAATTTGGGGAAGAATTTCAAAGACTGCCATGCGTTTTGCAGGAGTAGGCAAAGATGAGACACGAAAGGAGTGGACTGTTTCTAATGTACTAGAAATGATCAAAAACAAATATTATTCTGTAGAA] [+] EMBL BM580726 [CCGCCCACGCGTCCGAGCGAAACGAAACTCTTTGCACTCGCTTTGTTCGTACACCAGAGACAACGGAACTAATCGTATGCTGTCTCAGAGGTGGCTCCAGATTATTACTGCGCAGCAGATGAATCACTGAATGCAGGACGAATAGAAAACAGACACTTGAACTAGCAAGCCAACTAGCGGAACGATGACTGTAGCATACCTGTAGTAAATAAGAGATATCCGGTAGGTTGAAAATTTCAATCAAACAAATAAGAGTATAGCTAGTAGCCGAACATGAAAGCAACTTGTAGTAAAGCAGAATGCTTCTGACCGTACGTAATCTTGGTAAAAACAGTTAAAAGAATCTGTACAACGAGAATGATACTGTTTAAGAAGAAAGCGAATGCATGCAATACTACCAGCATTCTAGCATTAGAAAGGAAAGGTACGCGTCGTATTCTACCACAAACAACTATCAGTACAGACGAAGAGAAATCGCTAAAACGCCTGGTAATTTGAAATTTGGGGAAGAATTTCAAAGACTGCCATGCGTTTTGCAGGAGTAGGCAAAGATGAGACACGAAAGGAGTGGACTGTTTCTAATGTACTAGAAATGATCAAAAACAAATATTATTCTGTAGAA] [+] EMBL BX612110 [ ATTATAGCATTAGAAAGGAAAGGGACGCGTCGTATTCTACCACAAACAACTATCAGTACAGACGAAGAGAAATCGCTAAAAC ] consensusID : consensus_3208#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence [CCGAGCCCACAATTTAGTCCTATGAGTGGCAAGATTTAATATAATATCTTTGAAATAGAACCAACCAGGAAGCGATGAAGTACGAAAGCATCTGTACCTCTCAGCCATTCGTTAGTGGGACTGGTTTTCAGCTATGGTCAAGCGAAACGAAACTCTTTGCACTCGCTTTGTTCGTACACCAGAGACAACGGAACTAATCGTATGCTGTCTCAGAGGTGGCTCCAGATTATTACTGCGCAGCAGATGAATCACTGAATGCAGGACGAATAGAAAACAGACACTTGAACTAGCAAGCCAACTAGCGGAACGATGACTGTAGCATACCTGTAGTAAATAAGAGATATCCGGTAGGTTGAAAATTTCAATCAAACAAATAAGAGTATAGCTAGTAGCCGAACATGAAAGCAACTTGTAGTAAAGCAGAATGCTTCTGACCGTACGTAATCTTGGTAAAAACAGTTAAAAGAATCTGTACAACGAGAATGATACTGTTTAAGAAGAAAGCGAATGCATGCAATACTACCAGCATTCTAGCATTAGAAAGGAAAGGTACGCGTCGTATTCTACCACAAACAACTATCAGTACAGACGAAGAGAAA] [+] EMBL BM600441 [CCGAGCCCACAATTTAGTCCTATGAGTGGCAAGATTTAATATAATATCTTTGAAATAGAACCAACCAGGAAGCGATGAAGTACGAAAGCATCTGTACCTCTCAGCCATTCGTTAGTGGGACTGGTTTTCAGCTATGGTCAAGCGAAACGAAACTCTTTGCACTCGCTTTGTTCGTACACCAGAGACAACGGAACTAATCGTATGCTGTCTCAGAGGTGGCTCCAGATTATTACTGCGCAGCAGATGAATCACTGAATGCAGGACGAATAGAAAACAGACACTTGAACTAGCAAGCCAACTAGCGGAACGATGACTGTAGCATACCTGTAGTAAATAAGAGATATCCGGTAGGTTGAAAATTTCAATCAAACAAATAAGAGTATAGCTAGTAGCCGAACATGAAAGCAACTTGTAGTAAAGCAGAATGCTTCTGACCGTACGTAATCTTGGTAAAAACAGTTAAAAGAATCTGTACAACGAGAATGATACTGTTTAAGAAGAAAGCGAATGCATGCAATACTACCAGCATTCTAGCATTAGAAAGGAAAGGTACGCGTCGTATTCTACCACAAACAACTATCAGTACAGACGAAGAGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3208#0 ------------------------------------------------------------ consensus_3208#1 CCGAGCCCACAATTTAGTCCTATGAGTGGCAAGATTTAATATAATATCTTTGAAATAGAA 60 consensus_3208#0 ------------------------------------------------------------ consensus_3208#1 CCAACCAGGAAGCGATGAAGTACGAAAGCATCTGTACCTCTCAGCCATTCGTTAGTGGGA 120 consensus_3208#0 -----CCGCCCACGCGTCCGAGCGAAACGAAACTCTTTGCACTCGCTTTGTTCGTACACC 55 consensus_3208#1 CTGGTTTTCAGCTATGGTCAAGCGAAACGAAACTCTTTGCACTCGCTTTGTTCGTACACC 180 * * * **************************************** consensus_3208#0 AGAGACAACGGAACTAATCGTATGCTGTCTCAGAGGTGGCTCCAGATTATTACTGCGCAG 115 consensus_3208#1 AGAGACAACGGAACTAATCGTATGCTGTCTCAGAGGTGGCTCCAGATTATTACTGCGCAG 240 ************************************************************ consensus_3208#0 CAGATGAATCACTGAATGCAGGACGAATAGAAAACAGACACTTGAACTAGCAAGCCAACT 175 consensus_3208#1 CAGATGAATCACTGAATGCAGGACGAATAGAAAACAGACACTTGAACTAGCAAGCCAACT 300 ************************************************************ consensus_3208#0 AGCGGAACGATGACTGTAGCATACCTGTAGTAAATAAGAGATATCCGGTAGGTTGAAAAT 235 consensus_3208#1 AGCGGAACGATGACTGTAGCATACCTGTAGTAAATAAGAGATATCCGGTAGGTTGAAAAT 360 ************************************************************ consensus_3208#0 TTCAATCAAACAAATAAGAGTATAGCTAGTAGCCGAACATGAAAGCAACTTGTAGTAAAG 295 consensus_3208#1 TTCAATCAAACAAATAAGAGTATAGCTAGTAGCCGAACATGAAAGCAACTTGTAGTAAAG 420 ************************************************************ consensus_3208#0 CAGAATGCTTCTGACCGTACGTAATCTTGGTAAAAACAGTTAAAAGAATCTGTACAACGA 355 consensus_3208#1 CAGAATGCTTCTGACCGTACGTAATCTTGGTAAAAACAGTTAAAAGAATCTGTACAACGA 480 ************************************************************ consensus_3208#0 GAATGATACTGTTTAAGAAGAAAGCGAATGCATGCAATACTACCAGCATTCTAGCATTAG 415 consensus_3208#1 GAATGATACTGTTTAAGAAGAAAGCGAATGCATGCAATACTACCAGCATTCTAGCATTAG 540 ************************************************************ consensus_3208#0 AAAGGAAAGGTACGCGTCGTATTCTACCACAAACAACTATCAGTACAGACGAAGAGAAAT 475 consensus_3208#1 AAAGGAAAGGTACGCGTCGTATTCTACCACAAACAACTATCAGTACAGACGAAGAGAAA- 599 *********************************************************** consensus_3208#0 CGCTAAAACGCCTGGTAATTTGAAATTTGGGGAAGAATTTCAAAGACTGCCATGCGTTTT 535 consensus_3208#1 ------------------------------------------------------------ consensus_3208#0 GCAGGAGTAGGCAAAGATGAGACACGAAAGGAGTGGACTGTTTCTAATGTACTAGAAATG 595 consensus_3208#1 ------------------------------------------------------------ consensus_3208#0 ATCAAAAACAAATATTATTCTGTAGAA 622 consensus_3208#1 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||