Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3208 cluster # 3208       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3208#0 length = 622 sequences # 2  
consensus_3208#1 length = 599 sequences # 1  

consensusID : consensus_3208#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 622
fasta sequence
                              [CCGCCCACGCGTCCGAGCGAAACGAAACTCTTTGCACTCGCTTTGTTCGTACACCAGAGACAACGGAACTAATCGTATGCTGTCTCAGAGGTGGCTCCAGATTATTACTGCGCAGCAGATGAATCACTGAATGCAGGACGAATAGAAAACAGACACTTGAACTAGCAAGCCAACTAGCGGAACGATGACTGTAGCATACCTGTAGTAAATAAGAGATATCCGGTAGGTTGAAAATTTCAATCAAACAAATAAGAGTATAGCTAGTAGCCGAACATGAAAGCAACTTGTAGTAAAGCAGAATGCTTCTGACCGTACGTAATCTTGGTAAAAACAGTTAAAAGAATCTGTACAACGAGAATGATACTGTTTAAGAAGAAAGCGAATGCATGCAATACTACCAGCATTCTAGCATTAGAAAGGAAAGGTACGCGTCGTATTCTACCACAAACAACTATCAGTACAGACGAAGAGAAATCGCTAAAACGCCTGGTAATTTGAAATTTGGGGAAGAATTTCAAAGACTGCCATGCGTTTTGCAGGAGTAGGCAAAGATGAGACACGAAAGGAGTGGACTGTTTCTAATGTACTAGAAATGATCAAAAACAAATATTATTCTGTAGAA]

[+] EMBL BM580726             [CCGCCCACGCGTCCGAGCGAAACGAAACTCTTTGCACTCGCTTTGTTCGTACACCAGAGACAACGGAACTAATCGTATGCTGTCTCAGAGGTGGCTCCAGATTATTACTGCGCAGCAGATGAATCACTGAATGCAGGACGAATAGAAAACAGACACTTGAACTAGCAAGCCAACTAGCGGAACGATGACTGTAGCATACCTGTAGTAAATAAGAGATATCCGGTAGGTTGAAAATTTCAATCAAACAAATAAGAGTATAGCTAGTAGCCGAACATGAAAGCAACTTGTAGTAAAGCAGAATGCTTCTGACCGTACGTAATCTTGGTAAAAACAGTTAAAAGAATCTGTACAACGAGAATGATACTGTTTAAGAAGAAAGCGAATGCATGCAATACTACCAGCATTCTAGCATTAGAAAGGAAAGGTACGCGTCGTATTCTACCACAAACAACTATCAGTACAGACGAAGAGAAATCGCTAAAACGCCTGGTAATTTGAAATTTGGGGAAGAATTTCAAAGACTGCCATGCGTTTTGCAGGAGTAGGCAAAGATGAGACACGAAAGGAGTGGACTGTTTCTAATGTACTAGAAATGATCAAAAACAAATATTATTCTGTAGAA]
[+] EMBL BX612110             [                                                                                                                                                                                                                                                                                                                                                                                                                  ATTATAGCATTAGAAAGGAAAGGGACGCGTCGTATTCTACCACAAACAACTATCAGTACAGACGAAGAGAAATCGCTAAAAC                                                                                                                                          ]


>consensus_3208#0 CCGCCCACGCGTCCGAGCGAAACGAAACTCTTTGCACTCGCTTTGTTCGTACACCAGAGA CAACGGAACTAATCGTATGCTGTCTCAGAGGTGGCTCCAGATTATTACTGCGCAGCAGAT GAATCACTGAATGCAGGACGAATAGAAAACAGACACTTGAACTAGCAAGCCAACTAGCGG AACGATGACTGTAGCATACCTGTAGTAAATAAGAGATATCCGGTAGGTTGAAAATTTCAA TCAAACAAATAAGAGTATAGCTAGTAGCCGAACATGAAAGCAACTTGTAGTAAAGCAGAA TGCTTCTGACCGTACGTAATCTTGGTAAAAACAGTTAAAAGAATCTGTACAACGAGAATG ATACTGTTTAAGAAGAAAGCGAATGCATGCAATACTACCAGCATTCTAGCATTAGAAAGG AAAGGTACGCGTCGTATTCTACCACAAACAACTATCAGTACAGACGAAGAGAAATCGCTA AAACGCCTGGTAATTTGAAATTTGGGGAAGAATTTCAAAGACTGCCATGCGTTTTGCAGG AGTAGGCAAAGATGAGACACGAAAGGAGTGGACTGTTTCTAATGTACTAGAAATGATCAA AAACAAATATTATTCTGTAGAA



consensusID : consensus_3208#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 599
fasta sequence
                              [CCGAGCCCACAATTTAGTCCTATGAGTGGCAAGATTTAATATAATATCTTTGAAATAGAACCAACCAGGAAGCGATGAAGTACGAAAGCATCTGTACCTCTCAGCCATTCGTTAGTGGGACTGGTTTTCAGCTATGGTCAAGCGAAACGAAACTCTTTGCACTCGCTTTGTTCGTACACCAGAGACAACGGAACTAATCGTATGCTGTCTCAGAGGTGGCTCCAGATTATTACTGCGCAGCAGATGAATCACTGAATGCAGGACGAATAGAAAACAGACACTTGAACTAGCAAGCCAACTAGCGGAACGATGACTGTAGCATACCTGTAGTAAATAAGAGATATCCGGTAGGTTGAAAATTTCAATCAAACAAATAAGAGTATAGCTAGTAGCCGAACATGAAAGCAACTTGTAGTAAAGCAGAATGCTTCTGACCGTACGTAATCTTGGTAAAAACAGTTAAAAGAATCTGTACAACGAGAATGATACTGTTTAAGAAGAAAGCGAATGCATGCAATACTACCAGCATTCTAGCATTAGAAAGGAAAGGTACGCGTCGTATTCTACCACAAACAACTATCAGTACAGACGAAGAGAAA]

[+] EMBL BM600441             [CCGAGCCCACAATTTAGTCCTATGAGTGGCAAGATTTAATATAATATCTTTGAAATAGAACCAACCAGGAAGCGATGAAGTACGAAAGCATCTGTACCTCTCAGCCATTCGTTAGTGGGACTGGTTTTCAGCTATGGTCAAGCGAAACGAAACTCTTTGCACTCGCTTTGTTCGTACACCAGAGACAACGGAACTAATCGTATGCTGTCTCAGAGGTGGCTCCAGATTATTACTGCGCAGCAGATGAATCACTGAATGCAGGACGAATAGAAAACAGACACTTGAACTAGCAAGCCAACTAGCGGAACGATGACTGTAGCATACCTGTAGTAAATAAGAGATATCCGGTAGGTTGAAAATTTCAATCAAACAAATAAGAGTATAGCTAGTAGCCGAACATGAAAGCAACTTGTAGTAAAGCAGAATGCTTCTGACCGTACGTAATCTTGGTAAAAACAGTTAAAAGAATCTGTACAACGAGAATGATACTGTTTAAGAAGAAAGCGAATGCATGCAATACTACCAGCATTCTAGCATTAGAAAGGAAAGGTACGCGTCGTATTCTACCACAAACAACTATCAGTACAGACGAAGAGAAA]


>consensus_3208#1 CCGAGCCCACAATTTAGTCCTATGAGTGGCAAGATTTAATATAATATCTTTGAAATAGAA CCAACCAGGAAGCGATGAAGTACGAAAGCATCTGTACCTCTCAGCCATTCGTTAGTGGGA CTGGTTTTCAGCTATGGTCAAGCGAAACGAAACTCTTTGCACTCGCTTTGTTCGTACACC AGAGACAACGGAACTAATCGTATGCTGTCTCAGAGGTGGCTCCAGATTATTACTGCGCAG CAGATGAATCACTGAATGCAGGACGAATAGAAAACAGACACTTGAACTAGCAAGCCAACT AGCGGAACGATGACTGTAGCATACCTGTAGTAAATAAGAGATATCCGGTAGGTTGAAAAT TTCAATCAAACAAATAAGAGTATAGCTAGTAGCCGAACATGAAAGCAACTTGTAGTAAAG CAGAATGCTTCTGACCGTACGTAATCTTGGTAAAAACAGTTAAAAGAATCTGTACAACGA GAATGATACTGTTTAAGAAGAAAGCGAATGCATGCAATACTACCAGCATTCTAGCATTAG AAAGGAAAGGTACGCGTCGTATTCTACCACAAACAACTATCAGTACAGACGAAGAGAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3208#0      ------------------------------------------------------------
consensus_3208#1      CCGAGCCCACAATTTAGTCCTATGAGTGGCAAGATTTAATATAATATCTTTGAAATAGAA 60
                                                                                  

consensus_3208#0      ------------------------------------------------------------
consensus_3208#1      CCAACCAGGAAGCGATGAAGTACGAAAGCATCTGTACCTCTCAGCCATTCGTTAGTGGGA 120
                                                                                  

consensus_3208#0      -----CCGCCCACGCGTCCGAGCGAAACGAAACTCTTTGCACTCGCTTTGTTCGTACACC 55
consensus_3208#1      CTGGTTTTCAGCTATGGTCAAGCGAAACGAAACTCTTTGCACTCGCTTTGTTCGTACACC 180
                              *      *  * ****************************************

consensus_3208#0      AGAGACAACGGAACTAATCGTATGCTGTCTCAGAGGTGGCTCCAGATTATTACTGCGCAG 115
consensus_3208#1      AGAGACAACGGAACTAATCGTATGCTGTCTCAGAGGTGGCTCCAGATTATTACTGCGCAG 240
                      ************************************************************

consensus_3208#0      CAGATGAATCACTGAATGCAGGACGAATAGAAAACAGACACTTGAACTAGCAAGCCAACT 175
consensus_3208#1      CAGATGAATCACTGAATGCAGGACGAATAGAAAACAGACACTTGAACTAGCAAGCCAACT 300
                      ************************************************************

consensus_3208#0      AGCGGAACGATGACTGTAGCATACCTGTAGTAAATAAGAGATATCCGGTAGGTTGAAAAT 235
consensus_3208#1      AGCGGAACGATGACTGTAGCATACCTGTAGTAAATAAGAGATATCCGGTAGGTTGAAAAT 360
                      ************************************************************

consensus_3208#0      TTCAATCAAACAAATAAGAGTATAGCTAGTAGCCGAACATGAAAGCAACTTGTAGTAAAG 295
consensus_3208#1      TTCAATCAAACAAATAAGAGTATAGCTAGTAGCCGAACATGAAAGCAACTTGTAGTAAAG 420
                      ************************************************************

consensus_3208#0      CAGAATGCTTCTGACCGTACGTAATCTTGGTAAAAACAGTTAAAAGAATCTGTACAACGA 355
consensus_3208#1      CAGAATGCTTCTGACCGTACGTAATCTTGGTAAAAACAGTTAAAAGAATCTGTACAACGA 480
                      ************************************************************

consensus_3208#0      GAATGATACTGTTTAAGAAGAAAGCGAATGCATGCAATACTACCAGCATTCTAGCATTAG 415
consensus_3208#1      GAATGATACTGTTTAAGAAGAAAGCGAATGCATGCAATACTACCAGCATTCTAGCATTAG 540
                      ************************************************************

consensus_3208#0      AAAGGAAAGGTACGCGTCGTATTCTACCACAAACAACTATCAGTACAGACGAAGAGAAAT 475
consensus_3208#1      AAAGGAAAGGTACGCGTCGTATTCTACCACAAACAACTATCAGTACAGACGAAGAGAAA- 599
                      *********************************************************** 

consensus_3208#0      CGCTAAAACGCCTGGTAATTTGAAATTTGGGGAAGAATTTCAAAGACTGCCATGCGTTTT 535
consensus_3208#1      ------------------------------------------------------------
                                                                                  

consensus_3208#0      GCAGGAGTAGGCAAAGATGAGACACGAAAGGAGTGGACTGTTTCTAATGTACTAGAAATG 595
consensus_3208#1      ------------------------------------------------------------
                                                                                  

consensus_3208#0      ATCAAAAACAAATATTATTCTGTAGAA 622
consensus_3208#1      ---------------------------
                                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)