These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3210#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 699 fasta sequence [CCGGACAAAACCAAACCAGAGCAAGCAAAAGACAGACAAAAAAAAAGAAAGAGGGAGAAAACGCGGACGGCGGCACATCATGGGAAACATCATTCCGTGTGGAAACAACAAAAGCTTCCAGCAGATGGGGACGATTTCGATTTGTTTTTTTTTGTTGTTGTGTTTGTTGGCATCCTGTAGGGGGAGGAAGAATCGCCTAGCCCCTGGCAAACCATCGCTGGACGGGGCGGGAAACGAAACGACGCACGCGGTGGTGTACTAGGTGGGTGGATGGCGGCTGTAAAGTAAATTATAAACGTAAATTTTTACTCTCTTTAACACTGATCACTAATGCTACACACCCATACAGATACATACAACTTCACACACACACAAACACCTACATTCGACGGTTAGTGGATGATCAAGTTCACGCCGCCTATGGGGGACGTTGTGTCCGCACGGGAATGTAGTGAAAACAGCTGCTAATTGCGTTTCTGCCAGCGTCGCTGCGCATTTGCTTGCGTATAAGGCCTTAGTCGGTGCATCGGCCAGAGTACTGCCGATCGCTTTTATTAACCATCGCCACATGGATC-CCAACCTGCTCGGTTGTTTCGTACGGCCTCTGCCTGAGCCTTTGCTTTTGCCAAATGTTTTTCA-TTTCACAATCACGCAAATTGAATGATAATGCCATTGAAAAAGTATTTGTACGCTGCTACT] [+] EMBL BM612477 [CCGGACAAAACCAAACCAGAGCAAGCAAAAGACAGACAAAAAAAAAGAAAGAGGGAGAAAACGCGGACGGCGGCACATCATGGGAAACATCATTCCGTGTGGAAACAACAAAAGCTTCCAGCAGATGGGGACGATTTCGATTTGTTTTTTTTTGTTGTTGTGTTTGTTGGCATCCTGTAGGGGGAGGAAGAATCGCCTAGCCCCTGGCAAACCATCGCTGGACGGGGCGGGAAACGAAACGACGCACGCGGTGGTGTACTAGGTGGGTGGATGGCGGCTGTAAAGTAAATTATAAACGTAAATTTTTACTCTCTTTAACACTGATCACTAATGCTACACACCCATACAGATACATACAACTTCACACACACACAAACACCTACATTCGACGGTTAGTGGATGATCAAGTTCACGCCGCCTATGGGGGACGTTGTGTCCGCACGGGAATGTAGTGAAAACAGCTGCTAATTGCGTTTCTGCCAGCGTCGCTGCGCATTTGCTTGCGTATAAGGCCTTAGTCGGTGCATCGGCCAGAGTACTGCCGATCGCTTTTATTAACCATCGCCACATGGATC CCAACCTGCTCGGTTGTTTCGTACGGCCTCTGCCTGAGCCTTTGCTTTTGCCAAATGTTTTTCA TTTCACAATCACGCAAATTGAATG ] [+] EMBL BM641467 [ ccGGAGAAAACGCGGACGGCGGCACATCATGGGAAACATCATTCCGTGTGGAAACAACAAAAGCTTCCAGCAGATGGGGACGATTTCGATTTGTTTTTTTTTGTTGTTGTGTTTGTTGGCATCCTGTAGGGGGAGGAAGAATCGCCTAGCCCCTGGCAAACCATCGCTGGACGGGGCGGGAAACGAAACGACGCACGCGGTGGTGTACTAGGTGGGTGGATGGCGGCTGTAAAGTAAATTATAAACGTAAATTTTTACTCTCTTTAACACTGATCACTAATGCTACACACCCATACAGATACATACAACTTCACACACACACAAACACCTACATTCGACGGTTAGT GATGATCAAGTTCACGCCGCCTAT GGGGACGTTGTGTCCGCACGGGAATGTAGTGAAAACAGCTGCTAATTGCGTTTCTGCCAGCGTCGCTGCGCATTTGCTTGCGTATAA GCCTTAGTCGGTGCATCGGCCAGAGTACTGCCGATCGCTTTTATTAACCATCGCCACATGGATCACCAA CTGCTCGGTTGTTTCGTACGGCCTCTGCCTGAGCCTTTGCTTTTGCCAAATGTTTTTCATTTTCACAATCACGCAAATTGAATGATAATGCCATTGAAAAAGTATTTGTACGCTGCTACT] consensusID : consensus_3210#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [CCGCCCACGCGTCCGCAAGGATCTGCTGGACCAGATCGGTGAGGGTGGCCGCAACATCCACGAGATCGAGAAGTCGCGCAAGCGCCTGGAGGCCGAGAAGGACGAGCTGCAGGCCGCCCTCGAGGAGGCTGAAGCCGCCCTGGAGCAGGAGGAGAACAAGGTTCTGCGTGCTCAGCTTGAACTGTCTCAGGTCCGTCAAGAAATTGACCGCCGCATCCAGGAGAAGGAAGAAGAGTTCGAGAACACTCGCAAGAACCACCAGCGCGCCCTGGACTCGATGCAGGCTTCCCTGGAGGCCGAAGCCAAGGGCAAGGCCGAGGCTCTGCGTATGAAGAAGAAGCTGGAAGCCGACATCAACGAGCTGGAGATTGCTCTGGATCACGCCAACAAGGCTAACGCTGAGGCCCAGAAGAACATCAAGCGCTACCAGCAGCAGCTGAAGGACGTCCAGAGCGCCCTGGAGGAGGAACAGCGCGCCCGCGACGATGCCCGCGAGCAGCTGGGTATCTCGGAGCGCCGTGCCAACGCTCTCCAGAACGAACTGGAGGAGTCGCGCACCCTGTTGGAGCAGGCCGACCGTGGGCCGTCGCC] [+] EMBL BM625696 [CCGCCCACGCGTCCGCAAGGATCTGCTGGACCAGATCGGTGAGGGTGGCCGCAACATCCACGAGATCGAGAAGTCGCGCAAGCGCCTGGAGGCCGAGAAGGACGAGCTGCAGGCCGCCCTCGAGGAGGCTGAAGCCGCCCTGGAGCAGGAGGAGAACAAGGTTCTGCGTGCTCAGCTTGAACTGTCTCAGGTCCGTCAAGAAATTGACCGCCGCATCCAGGAGAAGGAAGAAGAGTTCGAGAACACTCGCAAGAACCACCAGCGCGCCCTGGACTCGATGCAGGCTTCCCTGGAGGCCGAAGCCAAGGGCAAGGCCGAGGCTCTGCGTATGAAGAAGAAGCTGGAAGCCGACATCAACGAGCTGGAGATTGCTCTGGATCACGCCAACAAGGCTAACGCTGAGGCCCAGAAGAACATCAAGCGCTACCAGCAGCAGCTGAAGGACGTCCAGAGCGCCCTGGAGGAGGAACAGCGCGCCCGCGACGATGCCCGCGAGCAGCTGGGTATCTCGGAGCGCCGTGCCAACGCTCTCCAGAACGAACTGGAGGAGTCGCGCACCCTGTTGGAGCAGGCCGACCGTGGGCCGTCGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3210#0 CCGGACAAAACCAAACCAGAGCAAGCAAAAGACAGACAAAAAAAAAGAAAGAGGGAGAAA 60 consensus_3210#1 -------------------------CCGCCCACGCGTCCGCAAGGATCTGCTGGACCAGA 35 * ** ** * ** * * consensus_3210#0 ACGCGGACGGCGGC-ACATCATGGGAAACATCATTCCGTGTGGAAACAACAAAAGCTTCC 119 consensus_3210#1 TCGGTGAGGGTGGCCGCAACATCCACGAGATCG--------AGAAGTCGCGCAAGCGCCT 87 ** ** ** *** ** *** * *** *** * **** * consensus_3210#0 AGCAGATGGGGACGATTTCGATTTGTTTTTTTTTGTTGTTGTGTTTGTTGGCATCCTGTA 179 consensus_3210#1 GGAGGCCGAGAAGGA---CGAGCTGCAGGCCGCCCTCGAGGAGGCTGAAGCCGCCCTGGA 144 * * * * * ** *** ** * * * * ** * * **** * consensus_3210#0 GGGGGAGGA-----AGAATCGCCTAGCCCCTGGCAAACCATCGCTGGACGGGGCGGGAAA 234 consensus_3210#1 GCAGGAGGAGAACAAGGTTCTGCGTGCTCAGCTTGAACTGTCTCAGGTCCGT-CAAGAAA 203 * ****** ** ** * ** * *** ** * ** * * * **** consensus_3210#0 CGAAACGACGCACGCGGTGGTGTACTAGGTGGGTGGATGGCGGCTGTAAAGTAAATTATA 294 consensus_3210#1 TTGACCGCCGCATCCAGGAGAAGGAAGAAGAGTTCGAGAACACTCGCAAG---AACCACC 260 * ** **** * * * * * ** * * ** ** * consensus_3210#0 AACGTAAATTTTTACTCTCTTTAA----CACTGATCACTAATGCTACACACCCATACAGA 350 consensus_3210#1 AGCGCGC-CCTGGACTCGATGCAGGCTTCCCTGGAGGCCGAAGCCAAGGGCAAGGCCGAG 319 * ** * **** * * * *** * * ** * * * consensus_3210#0 TACATACAACTTCACACACACACAAACACCTACATTCGACGGTTAGTGGATGATCAAGTT 410 consensus_3210#1 GCTCTGCGTATGAAGAAGAAGCTGGAAGCCGACATCAACGAGCTGGAGATTGCTCTGGAT 379 * * * * * * * ** **** * * * * ** ** * * consensus_3210#0 CACGCCGCCTATGGGGGACGTTGTG-TCCGCACGGGAATGTAGTGAAAACAGCTGCTAAT 469 consensus_3210#1 CACGCCAAC-AAGGCTAACGCTGAGGCCCAGAAGAACATCAAGCGCTACCAGCAGC-AGC 437 ****** * * ** *** ** * ** * * ** ** * * **** ** * consensus_3210#0 TGCGTTTCTGCCAGCGTCGCTGCGCATTTGCTTGCGTATAAGGCCTTAGTCGGTGCAT-C 528 consensus_3210#1 TGAAGGACGTCCAGAG-CGCCCTGGAGGAG---GAACAGCGCGCCCGCGACGATGCCCGC 493 ** * **** * *** * * * * * *** * ** *** * consensus_3210#0 GGCCAG---AGTACTGCCGATCGCTTTTATTAACCATCGCCACATGGATCCCAAC---CT 582 consensus_3210#1 GAGCAGCTGGGTATCTCGGAGCGCCGT-GCCAACGCTCTCCAGAACGAACTGGAGGAGTC 552 * *** *** * ** *** * *** ** *** * ** * * consensus_3210#0 GCTCGGTTGTTTCGTACGGCCTCTGCCTGAGCCTTTGCTTTTGCCAAATGTTTTTCATTT 642 consensus_3210#1 GCGCACCCTGTTGGAGCAGGCCGACCGTGGGCCGTCGCC--------------------- 591 ** * ** * * * * * ** *** * ** consensus_3210#0 CACAATCACGCAAATTGAATGATAATGCCATTGAAAAAGTATTTGTACGCTGCTACT 699 consensus_3210#1 --------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||