cluster # 3212

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Anopheles gambiae
cluster # 3212 cluster # 3212 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3212#0 length = 564 sequences # 1

consensus_3212#1 length = 560 sequences # 1
consensus_3212#2 length = 469 sequences # 1

consensusID : consensus_3212#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 564
fasta sequence

                              [CCGCGGACGCGTGGGCGAGGTCAAGTCGACCGCCGGAGACACCCATCTGGGCGGTGAGGACTTCGACAACCGTCTGGTGAACCACTTCGCACAGGAATTCAAGCGCAAGCACAAGAAGGATCTGTCCACCAACAAGCGCGCCCTGCGCCGACTGCGCACGGCGTGCGAGCGCGCGAAGCGCACGCTCTCGTCGTCGACGCAGGCGAGCATTGAGATCGATTCGCTGTTCGAGGGAACCGATTTCTACACCTCGATCACGCGCGCCCGCTTCGAGGAGCTGAACGCCGACCTGTTCCGCTCGACGATGGAGCCGGTCGAGAAGGCGCTGCGCGACGCCAAGATGGACAAGGCGAGCATCCACGACATCGTGCTGGTGGGTGGATCGACGCGCATCCCGAAGGTGCAGAAGCTGCTGCAGGACTTCTTCAACGGCAAGGAGTTGAACAAGTCTATCAACCCGGACGAGGCCGTCGCGTACGGTGCCGCCGTCCAGGCCGCCATCCTGCACGGCGACAAGTCGGAGGAGGTGCAGGATCTGCTGCTGCTCGACGTGACCCCGCTGTC]

[+] EMBL BM588736             [CCGCGGACGCGTGGGCGAGGTCAAGTCGACCGCCGGAGACACCCATCTGGGCGGTGAGGACTTCGACAACCGTCTGGTGAACCACTTCGCACAGGAATTCAAGCGCAAGCACAAGAAGGATCTGTCCACCAACAAGCGCGCCCTGCGCCGACTGCGCACGGCGTGCGAGCGCGCGAAGCGCACGCTCTCGTCGTCGACGCAGGCGAGCATTGAGATCGATTCGCTGTTCGAGGGAACCGATTTCTACACCTCGATCACGCGCGCCCGCTTCGAGGAGCTGAACGCCGACCTGTTCCGCTCGACGATGGAGCCGGTCGAGAAGGCGCTGCGCGACGCCAAGATGGACAAGGCGAGCATCCACGACATCGTGCTGGTGGGTGGATCGACGCGCATCCCGAAGGTGCAGAAGCTGCTGCAGGACTTCTTCAACGGCAAGGAGTTGAACAAGTCTATCAACCCGGACGAGGCCGTCGCGTACGGTGCCGCCGTCCAGGCCGCCATCCTGCACGGCGACAAGTCGGAGGAGGTGCAGGATCTGCTGCTGCTCGACGTGACCCCGCTGTC]




>consensus_3212#0
CCGCGGACGCGTGGGCGAGGTCAAGTCGACCGCCGGAGACACCCATCTGGGCGGTGAGGA
CTTCGACAACCGTCTGGTGAACCACTTCGCACAGGAATTCAAGCGCAAGCACAAGAAGGA
TCTGTCCACCAACAAGCGCGCCCTGCGCCGACTGCGCACGGCGTGCGAGCGCGCGAAGCG
CACGCTCTCGTCGTCGACGCAGGCGAGCATTGAGATCGATTCGCTGTTCGAGGGAACCGA
TTTCTACACCTCGATCACGCGCGCCCGCTTCGAGGAGCTGAACGCCGACCTGTTCCGCTC
GACGATGGAGCCGGTCGAGAAGGCGCTGCGCGACGCCAAGATGGACAAGGCGAGCATCCA
CGACATCGTGCTGGTGGGTGGATCGACGCGCATCCCGAAGGTGCAGAAGCTGCTGCAGGA
CTTCTTCAACGGCAAGGAGTTGAACAAGTCTATCAACCCGGACGAGGCCGTCGCGTACGG
TGCCGCCGTCCAGGCCGCCATCCTGCACGGCGACAAGTCGGAGGAGGTGCAGGATCTGCT
GCTGCTCGACGTGACCCCGCTGTC

consensusID : consensus_3212#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 560
fasta sequence

                              [CCGCCCACGCGTCCGGGAGGATGACGTCAACCTGGCCTCGTCCACGCTGATCAGCGAGGGCAAGTGTCCGTCGGATGCGATGGGTATTGTCATCTCGTACTCGCTGCGCGTCAAGCTCAATTGTGGCACGCTCGGTGGCGAACTCCAGACGGACGTACCGTTCAAGCTGATGAACCCAGCACCTGGATCTGTCAGCGAGAGCGCGTGAACGCCCTGAAGAAGATGAAGTCGATAGAGCGTCACCGTTACGAGAACTCGCACTACGCCGACGATGACGACAACATCGTGTTCGAAGACTTTGCCCGCCTGCGGATGAACGAGCCGGAGTAAGCCTGTCCCGCCTGATGCGGCATTCACCTGCAACCATCCTTCACCCCAAGGGCGAACGGCTTTAATCCGGAGAGGGGACAGCAAATGCCATGTCTTCTGTTCCATTTCCTCCACCGAGCACCCGAGCAGGCAGCAAACGCAAACATGAAGAAAACACACACGCCCCAAAAATCCTCCCAATGCTTTTCCGCGCCAAGTATGCTTTCTTTCATGCCCTTTTAATGCTCCCA]

[+] EMBL BM625811             [CCGCCCACGCGTCCGGGAGGATGACGTCAACCTGGCCTCGTCCACGCTGATCAGCGAGGGCAAGTGTCCGTCGGATGCGATGGGTATTGTCATCTCGTACTCGCTGCGCGTCAAGCTCAATTGTGGCACGCTCGGTGGCGAACTCCAGACGGACGTACCGTTCAAGCTGATGAACCCAGCACCTGGATCTGTCAGCGAGAGCGCGTGAACGCCCTGAAGAAGATGAAGTCGATAGAGCGTCACCGTTACGAGAACTCGCACTACGCCGACGATGACGACAACATCGTGTTCGAAGACTTTGCCCGCCTGCGGATGAACGAGCCGGAGTAAGCCTGTCCCGCCTGATGCGGCATTCACCTGCAACCATCCTTCACCCCAAGGGCGAACGGCTTTAATCCGGAGAGGGGACAGCAAATGCCATGTCTTCTGTTCCATTTCCTCCACCGAGCACCCGAGCAGGCAGCAAACGCAAACATGAAGAAAACACACACGCCCCAAAAATCCTCCCAATGCTTTTCCGCGCCAAGTATGCTTTCTTTCATGCCCTTTTAATGCTCCCA]




>consensus_3212#1
CCGCCCACGCGTCCGGGAGGATGACGTCAACCTGGCCTCGTCCACGCTGATCAGCGAGGG
CAAGTGTCCGTCGGATGCGATGGGTATTGTCATCTCGTACTCGCTGCGCGTCAAGCTCAA
TTGTGGCACGCTCGGTGGCGAACTCCAGACGGACGTACCGTTCAAGCTGATGAACCCAGC
ACCTGGATCTGTCAGCGAGAGCGCGTGAACGCCCTGAAGAAGATGAAGTCGATAGAGCGT
CACCGTTACGAGAACTCGCACTACGCCGACGATGACGACAACATCGTGTTCGAAGACTTT
GCCCGCCTGCGGATGAACGAGCCGGAGTAAGCCTGTCCCGCCTGATGCGGCATTCACCTG
CAACCATCCTTCACCCCAAGGGCGAACGGCTTTAATCCGGAGAGGGGACAGCAAATGCCA
TGTCTTCTGTTCCATTTCCTCCACCGAGCACCCGAGCAGGCAGCAAACGCAAACATGAAG
AAAACACACACGCCCCAAAAATCCTCCCAATGCTTTTCCGCGCCAAGTATGCTTTCTTTC
ATGCCCTTTTAATGCTCCCA

consensusID : consensus_3212#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 469
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGAAAATCACGTCGTTTCCATCCCCAGATTCATCCCGGAAGACTACATCCAGTGTTTAGCCGAGTTCCGGCCCCAGTTCCTGTTCGTGGTACCGTCGCTGCTCCTCTTCCTAGCCACCCATCCGAAGGTGACGCCCGACCTGCTGTCGAGTGTGGATTCCGTGCTGGTCGGCGCTGCGCCGGCCTCGCTGCAGCTGCAGGAAAAGTTCAAAAACAAAGTAGGCCGCGATATCGATATCGCGCAAGGGTACGGCATGACCGAAAGCTCGCCCGTTACGCTCTGCACGCCCCACCGGTACGACCTGTCGAAGGTGGGCACCTGCGGTCAGCTGTATCCCAACACGGAGGCCAAGATTGTGTCGCTGTCGGACGGTAGCAATCTGGGACCGCACCAGACGGGCGAGCTGTACCTGCGGGGGCCACAGATTATGAA]

[+] EMBL BM601033             [CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGAAAATCACGTCGTTTCCATCCCCAGATTCATCCCGGAAGACTACATCCAGTGTTTAGCCGAGTTCCGGCCCCAGTTCCTGTTCGTGGTACCGTCGCTGCTCCTCTTCCTAGCCACCCATCCGAAGGTGACGCCCGACCTGCTGTCGAGTGTGGATTCCGTGCTGGTCGGCGCTGCGCCGGCCTCGCTGCAGCTGCAGGAAAAGTTCAAAAACAAAGTAGGCCGCGATATCGATATCGCGCAAGGGTACGGCATGACCGAAAGCTCGCCCGTTACGCTCTGCACGCCCCACCGGTACGACCTGTCGAAGGTGGGCACCTGCGGTCAGCTGTATCCCAACACGGAGGCCAAGATTGTGTCGCTGTCGGACGGTAGCAATCTGGGACCGCACCAGACGGGCGAGCTGTACCTGCGGGGGCCACAGATTATGAA]




>consensus_3212#2
CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGAAAATCACGTCGTTTCCATCC
CCAGATTCATCCCGGAAGACTACATCCAGTGTTTAGCCGAGTTCCGGCCCCAGTTCCTGT
TCGTGGTACCGTCGCTGCTCCTCTTCCTAGCCACCCATCCGAAGGTGACGCCCGACCTGC
TGTCGAGTGTGGATTCCGTGCTGGTCGGCGCTGCGCCGGCCTCGCTGCAGCTGCAGGAAA
AGTTCAAAAACAAAGTAGGCCGCGATATCGATATCGCGCAAGGGTACGGCATGACCGAAA
GCTCGCCCGTTACGCTCTGCACGCCCCACCGGTACGACCTGTCGAAGGTGGGCACCTGCG
GTCAGCTGTATCCCAACACGGAGGCCAAGATTGTGTCGCTGTCGGACGGTAGCAATCTGG
GACCGCACCAGACGGGCGAGCTGTACCTGCGGGGGCCACAGATTATGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3212#0      ------CCGCGGACGCGTGGGCGAGGTCAAGTCGACCGCCGGAGACACCCATCTGGGCGG 54
consensus_3212#1      CCGCCCACGCGTCCGGGAGGATGACGTCAACCTGGCC-TCGTCCACGCTGATCAGCGAGG 59
consensus_3212#2      ------CCGCGGACGCGTGGGCG--GACGCGTGGGCGGACGCGTGGGAAAATCACGTCGT 52
                             ****  ** * **  *  * *     * *   **         ***     * 

consensus_3212#0      TGAGGACTTCGACAACCGTCTGGTGAACCACT-TCGCACAGGAATTCAAGCGCAAGCACA 113
consensus_3212#1      GCAAGTGTCCGTCGGATGCGATGGGTATTGTCATCTCGTACTCGCTGCGCGTCAAGCTCA 119
consensus_3212#2      TTCCATCCCCAGATTCATCCCGGAAGACTACATCCAGTGTTTAGCCGAGTTCCGGCCCCA 112
                               *            *   *       *                 *   * **

consensus_3212#0      AGAAGGATCTGTCCACCAACAAGCGCGCCCTGCGCCGACTGCGCACGGCGTGCGAGCGCG 173
consensus_3212#1      ATTGTGGCACGCTCGGTGGCGAACTCCAGACGGACGTACCGTTCA-AGCTGATGAACCCA 178
consensus_3212#2      GTTCCTGTTCGTGGTACCGTCGCTGCTCCTCTTCCTAGCCACCCA-----TCCGAAGGTG 167
                                *              *        *   *    **        **     

consensus_3212#0      CGAAGCGCACGCTCTCGTCGTCGACGCAGGCGAGCATTGAGATCGATTC-GCTGTTCGAG 232
consensus_3212#1      GCACCTGGAT-CTGTCAGCGAGAGCGCGTGAACGCCCTGAAGAAGATGAAGTCGATAGAG 237
consensus_3212#2      ACGCCCG-AC-CTGCTGTCGAGTGTGGATTCCGTGCTGGTCGGCGCTGCGCCGGCCTCGC 225
                            * *  **     **     *            *     * *      *      

consensus_3212#0      GGAACCGATTTCTACACCTCG---ATCACGC--GCGCCCGCTTCGAGGAGCTGAACGCCG 287
consensus_3212#1      CGTCACCGTTACGAGAACTCGC--ACTACGCCGACGATGACGACAACATCGTGTTCGAAG 295
consensus_3212#2      TGCAGCTGCAGGAAAAGTTCAAAAACAAAGTAGGCCGCGATATCGATATCGCG--CAAGG 283
                       *   *       * *  **    *  * *    *        * *      *  *   *

consensus_3212#0      ACCTGTTCCGCTCGACGATG---GAGCCGGT-CGAGAAGGCGCTGCGCGACGCCAAGATG 343
consensus_3212#1      ACTTTGCCCGCCTGCGGATGAACGAGCCGGAGTAAGCCTGTCCCGCCTGATGCGGCATTC 355
consensus_3212#2      GTACGGCATGACCGAAAGCTCGCCCGTTACGCTCTGCACGCCCCAC-CGGTACGAC-CTG 341
                               *   *           *         *   *  *  *  *   *     * 

consensus_3212#0      GACAAGGCGAGCATCCACGACATC--GTGCTGGTGGGTGGA--TCGACGCGCATCCCGAA 399
consensus_3212#1      ACCT--GCAACCATCCTTCACCCCAAGGGCGAACGGCTTTAATCCGGAGAGGGGACAGCA 413
consensus_3212#2      TCGAAGGTGGGCACCT------------GCGGTCAGCTGTATCCCAACACGGAGGCCAAG 389
                            *    ** *             **     * *  *   *     *    *    

consensus_3212#0      GGTGCAGAAGCTGCTGCAGGACTTCTTCAACGGCAAGGAGTTGAACAAGTCTATCAACCC 459
consensus_3212#1      AATGCCATGTCTTCTGTTCCATTTCCTCCAC--CGAGCACCCGAGCAGG-CAGCAAACGC 470
consensus_3212#2      ATTGT----GTCGCTGTCGGACGGTAGCAAT--CTGGGACCGCACCAGA-CGGGCGAGCT 442
                        **         ***    *      * *   *  * *    * **   *     *   

consensus_3212#0      GGAC--GAGGCCGTCGCGTACGGTGCCGCCGTCCAGGCCGCCATCCTGCACGGCGACAAG 517
consensus_3212#1      AAACATGAAGAAAACACACACGCCCCAAAAATCC---TCCCAATGCTTTTCCGCGCCAAG 527
consensus_3212#2      GTACCTGCGGGGGCCACAGATTATGAA--------------------------------- 469
                        **  *  *    * *  *                                        

consensus_3212#0      TCGGAGGAGGTGCAGGATCTGCTGCTGCTCGACGTGACCCCGCTGTC 564
consensus_3212#1      TATGCTTTCTTTCATGCCCTTTTAATGCTCCCA-------------- 560
consensus_3212#2      -----------------------------------------------