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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3214#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1069 fasta sequence
[TTTCACACGCAAACAACAAACCGATTCGCTCGCTAGCTCGCCGGGATCCGTGTAGTTCCAGTACAACTATTTCAAGCGTTCGTGTCGCACGTAACCAAAATAACTCGAAACGCATCCAAAATGGTAAAGTTTGTGATCGCATCGGCCGTTTTGTGCTGCGCGCTGGGTTTTGCCGTCGCCAGCTCCTGCACCAACCCGGAGGTGAAAACTAACTTCTACTCCACCACGGATGCCACGATTGTTAGCCAGATTGGGTTTGTAACGGAGTTCACGCTGAAGTGCTCCAACGCGGGAGCTGAAAAACTGCCCCTGTTCGCTGAGGTGCTTGGCAAGCTGGCTCCGGTTGTGCGCATCGGTGAAAACAAGTACCAGGTCAGCTGGAACGAAGAAATCAAGAAGGCCAGCAGCGGCTCGTACGCGGTCCGAAAAAAAACGATGAGGAATCTTACGCTGCCGTGCGCAAGGCACAGCGTGCGGGTGAGGACGTCCAATCGGTGAAGCCGCTGACGACCGTCACCGTCAACTTCCCCGGCGCTTACAAGGGACCGTGGGTGAACTCGGAAATCCTGGCTACCGGTTTGGTCGGATTCGTCGCCTACGTTGCGTTTACAACGCGGTCAAAGCTGATGGCTTAAGCTACGTAATGCACACCCGTTTGTACGCATTAAGCTTTCCGTTGGCCCGAGTAATCGGTGCTCCCGCATAAGAGTGTGTGTTTGTTAGTGTACCTTTCTCCATCGCGGATCATCAAATTCATCGCATTTTTCATCCGCACAAGAAGAAAAAACGTTCCTCATTTGCTCAGATGCAAGCAGCGTGTGTTGTGCACATGTTGTGTATGTAAGGAGTGTGCCGGAACTAATAACAAAACGCCTGGAAATTCTGGATAGAGTACCTCACCGGAGCGGGAGGGAAGAAGGCACACTCACATTTGCTTTCAATTTTCCAGAGACTGATAACACCTCTACCAGATTACCTATGGTGAATAAATCCGTTTGAAAGTAGATCATCGCTACCGAAGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAATGTCCCCAC]
[+] EMBL CNS08ID5 [TTTCACACGCAAACAACAAACCGATTCGCTCGCTAGCTCGCCGGGATCCGTGTAGTTCCAGTACAACTATTTCAAGCGTTCGTGTCGCACGTAACCAAAATAACTCGAAACGCATCCAAAATGGTAAAGTTTGTGATCGCATCGGCCGTTTTGTGCTGCGCGCTGGGTTTTGCCGTCGCCAGCTCCTGCACCAACCCGGAGGTGAAAACTAACTTCTACTCCACCACGGATGCCACGATTGTTAGCCAGATTGGGTTTGTAACGGAGTTCACGCTGAAGTGCTCCAACGCGGGAGCTGAAAAACTGCCCCTGTTCGCTGAGGTGCTTGGCAAGCTGGCTCCGGTTGTGCGCATCGGTGAAAACAAGTACCAGGTCAGCTGGAACGAAGAAATCAAGAAGGCCAGCAGCGGCTCGTACGCGGTCCGAAAAAAAACGATGAGGAATCTTACGCTGCCGTGCGCAAGGCACAGCGTGCGGGTGAGGACGTCCAATCGGTGAAGCCGCTGACGACCGTCACCGTCAACTTCCCCGGCGCTTACAAGGGACCGTGGGTGAACTCGGAAATCCTGGCTACCGGTTTGGTCGGATTCGTCGCCTACGTTGCGTTTACAACGCGGTCAAAGCTGATGGCTTAAGCTACGTAATGCACACCCGTTTGTACGCATTAAGCTTTCCGTTGGCCCGAGTAATCGGTGCTCCCGCATAAGAGTGTGTGTTTGTTAGTGTACCTTTCTCCATCGCGGATCATCAAATTCATCGCATTTTTCATCCGCACAAGAAGAAAAAACGTTCCTCATTTGCTCAGATGCAAGCAGCGTGTGTTGTGCACATGTTGTGTATGTAAGGAGTGTGCCGGAACTAATAACAAAACGCCTGGAAATTCTGGATAGAGTACCTCACCGGAGCGGGAGGGAAGAAGGCACACTCACATTTGCTTTCAATTTTCCAGAGACTGATAACACCTCTACCAGATTACCTATGGTGAATAAATCCGTTTGAAAGTAGATCATCGCTACCGAAGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAATGTCCCCAC]
consensusID : consensus_3214#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGGCTCGGAGCAGTTCATTCAAGTTGTTCAGTGATTGCCTTAAAGTAGCACATCCGCCACTCTCTCTCTCTCTCTCTCTCCGCCCGCCCGCTCGCCGTCGCTCATTCGCTCTCAACGAAACTTCCAGACGGACCATCTCCGACCCCAGCAAGCAAGTGTGTGCGTGTGCACGAGGAATAAACGCGTGAAAATCCCGTCAGCTCCCCCCGCCCCATAAAGCACGGTTAGTAGTGTGCCTGTGGTACCACCAACGCCAACGCCACCAGGAAAATCCAGCCGCGCTAAGCGAAGCGTTACTTTTCTTCACTTGTGTCTATTTTGTTTATCGTATGTCCATCCAGAATCTTAATACATTTGACCCATTTGCTGATGCAATAAAGGGTGCAGACTACGATGTGCAGGACGGTCTCGTGCACATAAGAATTCAGCAGAGAAATGGTCGCAAAACGCTAACCACTGTCCAGGGATTGTCGGCCGAGTACGACCTGAAGAAGATCGTGCGAGCATGTAAGAAGGAATTCGCATGCAATGGCACAGTAATTGAGCATCCTGA]
[+] EMBL BM622588 [CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGGCTCGGAGCAGTTCATTCAAGTTGTTCAGTGATTGCCTTAAAGTAGCACATCCGCCACTCTCTCTCTCTCTCTCTCTCCGCCCGCCCGCTCGCCGTCGCTCATTCGCTCTCAACGAAACTTCCAGACGGACCATCTCCGACCCCAGCAAGCAAGTGTGTGCGTGTGCACGAGGAATAAACGCGTGAAAATCCCGTCAGCTCCCCCCGCCCCATAAAGCACGGTTAGTAGTGTGCCTGTGGTACCACCAACGCCAACGCCACCAGGAAAATCCAGCCGCGCTAAGCGAAGCGTTACTTTTCTTCACTTGTGTCTATTTTGTTTATCGTATGTCCATCCAGAATCTTAATACATTTGACCCATTTGCTGATGCAATAAAGGGTGCAGACTACGATGTGCAGGACGGTCTCGTGCACATAAGAATTCAGCAGAGAAATGGTCGCAAAACGCTAACCACTGTCCAGGGATTGTCGGCCGAGTACGACCTGAAGAAGATCGTGCGAGCATGTAAGAAGGAATTCGCATGCAATGGCACAGTAATTGAGCATCCTGA]
consensusID : consensus_3214#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence
[GATTGCCCGAGGTTTACAAAGCGATGGGTTTCTAGGTGCAAAAGCACCCGTCATCGAGCTGGTCGAGTTCTGTTGCCTGTACGCAACGTAAAATGCTCCCAGTGTTGTGCCGCCAGTGTAATGCATAAATTCCTCGCAAACGGGCGGTATGTGTGCGACCTCGTGCGTTAAGCCGGACCGAAAGCCACCAGCGGTCACCGCGTCCAACGTTCGCCTTCTGCACTCGGCTGGACACCACTGGCACAGCTGTACCCTTCGTGTGCGGTCGTACAGCTTGTACCCGATCCGGAAGCAGCACAGCGGAAGTAATGAACGTGCGATGCGGCAAAAACGGCTCCCCTCCATTCGACGGTGGCCGTTCCGTTGGCGTCCCGCTGTCCGTGGTACCGCCGGTAGTGGACGCTAAAGCCATAGTTAGTGAAATTAGTCAAATCGGTCGCGAACGCTGCGCAAGAGCGGTGAGGATGGCACGAAGGAAGATGGCTTGCCCTCCGTGAACGTACGCTATACCCGAGGCTACAGACGGTCTCGCATATACCATAATACTTAATGTTCANTCAAAGATACCGATATGACGTAC]
[+] EMBL AL930507 [GATTGCCCGAGGTTTACAAAGCGATGGGTTTCTAGGTGCAAAAGCACCCGTCATCGAGCTGGTCGAGTTCTGTTGCCTGTACGCAACGTAAAATGCTCCCAGTGTTGTGCCGCCAGTGTAATGCATAAATTCCTCGCAAACGGGCGGTATGTGTGCGACCTCGTGCGTTAAGCCGGACCGAAAGCCACCAGCGGTCACCGCGTCCAACGTTCGCCTTCTGCACTCGGCTGGACACCACTGGCACAGCTGTACCCTTCGTGTGCGGTCGTACAGCTTGTACCCGATCCGGAAGCAGCACAGCGGAAGTAATGAACGTGCGATGCGGCAAAAACGGCTCCCCTCCATTCGACGGTGGCCGTTCCGTTGGCGTCCCGCTGTCCGTGGTACCGCCGGTAGTGGACGCTAAAGCCATAGTTAGTGAAATTAGTCAAATCGGTCGCGAACGCTGCGCAAGAGCGGTGAGGATGGCACGAAGGAAGATGGCTTGCCCTCCGTGAACGTACGCTATACCCGAGGCTACAGACGGTCTCGCATATACCATAATACTTAATGTTCANTCAAAGATACCGATATGACGTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3214#0 TTTCACACGCAAACAACAAACCGATTCGCTCGCTAGCTCGCCGGGATCCGTGTAGTTCCA 60
consensus_3214#1 ------------------------------------------------------------
consensus_3214#2 ------------------------------------------------------------
consensus_3214#0 GTACAACTATTTCAAGCGTTCGTGTCGCACGTAACCAAAATAACTCGAAACGCATCCAAA 120
consensus_3214#1 ------------------------------------------------------------
consensus_3214#2 ------------------------------------------------------------
consensus_3214#0 ATGGTAAAGTTTGTGATCGCATCGGCCGTTTTGTGCTGCGCGCTGGGTTTTGCCGTCGCC 180
consensus_3214#1 ------------------------------------------------------------
consensus_3214#2 ------------------------------------------------------------
consensus_3214#0 AGCTCCTGCACCAACCCGGAGGTGAAAACTAACTTCTACTCCACCACGGATGCCACGATT 240
consensus_3214#1 ------------------------------------------------------------
consensus_3214#2 ------------------------------------------------------------
consensus_3214#0 GTTAGCCAGATTGGGTTTGTAACGGAGTTCACGCTGAAGTGCTCCAACGCGGGAGCTGAA 300
consensus_3214#1 ------------------------------------------------------------
consensus_3214#2 ------------------------------------------------------------
consensus_3214#0 AAACTGCCCCTGTTCGCTGAGGTGCTTGGCAAGCTGGCTCCGGTTGTGCGCATCGGTGAA 360
consensus_3214#1 ---------------------------------CCGCGGACGCGTGGGCGGACGCGTGGG 27
consensus_3214#2 ------------------------------------------------------------
consensus_3214#0 AACAAGTACCAGGTCAGCTGGAACGAAGAAATCAAGAAGGCCAGCAGCGGCTCGTACGCG 420
consensus_3214#1 CGGACGCGTGGGGCT---CGGAGCAGTTCATTCAAGTTGTTCAGTGATTGCCTTAAAGTA 84
consensus_3214#2 -GATTGCCCGAGGTTTA-CAAAGCGATGGGTTTCTAG-GTGCAAAAGCACCCGTCATCGA 57
* ** * * * * ** * *
consensus_3214#0 GTCCGAAAAAAAACGATGAGGAATCTTACGCTGCCGTGCGCAAGGCACAGCGTGCGGGTG 480
consensus_3214#1 GCACATCCGCCACTCTCTCTCTCTCTCTCTCT-CCGCCCGC------CCGCTCGCCGTCG 137
consensus_3214#2 GCTGGTCGAGTTCTGTTGCCTGTACGCAACGTAAAATGCTCC-----CAGTGTTGTGCCG 112
* * * * * * * * *
consensus_3214#0 AGGACGTCCAATCGGTGAAGCCGCTGACGACCGTCACCGTCAA--CTTCCCCGGCGCTTA 538
consensus_3214#1 CTCATTCGCTCTCAACGAAACTTCCA--GACGG--ACCATCTC--CGACCCCAGCA--AG 189
consensus_3214#2 CCAGT--GTAATGCATAAATTCCTCGCAAACGGGCGGTATGTGTGCGACCTCGTGCGTTA 170
* ** ** * * * ** *
consensus_3214#0 CAAGGGACCGTGGGTGAACTCGGAAATCCTGGCTACCGGTTTGGTCGGATTCGTCGCCTA 598
consensus_3214#1 CAAGTGTGTGCGTGTGCACGAGGAATAAACGCGTGAAAATCCCGTCAGCTCCCCCCGCCC 249
consensus_3214#2 AGCCGGACCGAAAGC-CACCAGCGGTCACCGCGTCCAACGTTCGCCTTCTGCACTCGGCT 229
* * * ** * * * * * * *
consensus_3214#0 CGTTGCGTTTACAACGCGGTCAAAGCTGATGGCTTAAGCTACGT-AATGCACACCCGTTT 657
consensus_3214#1 CAT-------AAAGCACGGTTAGTAGTG-TGCCTGTGGTACCACCAACGCCAACGCCACC 301
consensus_3214#2 GGA--CACCACTGGCACAGCTGTACCCTTCGTGTGCGGTCGTAC-AGCTTGTACCCGATC 286
* * * * * * * ** *
consensus_3214#0 GTACGCATTAAGCTTTCCGTTGGCCC-GAGTAATCGGTGCTCCCGCATAAGAGTGTGTGT 716
consensus_3214#1 AGGAAAATCCAGCC--GCGCTAAGCG-AAGCGTT--ACTTTTCTTCACTTGTGTCTATTT 356
consensus_3214#2 CGGAAG---CAGCACAGCGGAAGTAATGAACGTGCGATGCGGCAAAAACGGCTCCCCTCC 343
*** ** * * * * *
consensus_3214#0 TTGTTAGTGTACCTTTCTCCATCGCGGATCATCAAATTCATCGCATTTTTCATCCGCACA 776
consensus_3214#1 TGTTTATCGTA----TGTCCATCCAGAATCTT--AATACATTTGACC---CATTTGCTGA 407
consensus_3214#2 ATTCGACGGTGGC--CGTTCCGTTGGCGTCCCGCTGTCCGTGGTACC----GCCGGTAGT 397
* ** * * * ** * * * * *
consensus_3214#0 AGAAGAAAAAACGTTCCTCATTTGCTCAGATGCAAGCAGCGTGTGTTGTGCACATGTTGT 836
consensus_3214#1 TGCAATAAAGGG------TGCAGACTACGATGTGCAGGACG-GTCTCGTGCACATAAGAA 460
consensus_3214#2 GGACGCTAAAGC----CATAGTTAGTGAAATTAGTCAAATCGGTCGCGAACGCTGCGCAA 453
* ** * ** ** * * *
consensus_3214#0 GTATGTAAGGAGTGTGCCGGAACTAATAACAAAACGCCTGGAAATTCTGGATAGAGTACC 896
consensus_3214#1 TTCAGCAGAGAAATGGTCGCAAAACGCTAACCACTGTCCAGGGATTGTCGGCCGAGTACG 520
consensus_3214#2 GAGCGGTGAGGATGGCACGAAGGAAGATGGCTTGCCCTCCGTGAACGTACGCTATACCCG 513
* * ** * * * * *
consensus_3214#0 TCACCGGAGCGGG--AGGGAAGAAG-GCACACTCACATTTGCTTTCAATTTTCCAGAGAC 953
consensus_3214#1 AC-CTGAAGAAGATCGTGCGAGCAT-GTAAGAAGGAATTCGCATGCAATGGCACAGTAAT 578
consensus_3214#2 AGGCTACAGACGGTCTCGCATATACCATAATACTTAATGTTCANTCAAAGATACCGATAT 573
* ** * * * * ** * *** * * *
consensus_3214#0 TGATAACACCTCTACCAGATTACCTATGGTGAATAAATCCGTTTGAAAGTAGATCATCGC 1013
consensus_3214#1 TG--AGCATCCTGA---------------------------------------------- 590
consensus_3214#2 GACGTAC----------------------------------------------------- 580
*
consensus_3214#0 TACCGAAGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAATGTCCCCAC 1069
consensus_3214#1 --------------------------------------------------------
consensus_3214#2 --------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||