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Anopheles gambiae
cluster # 3218 cluster # 3218       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3218#0 length = 680 sequences # 1  
consensus_3218#1 length = 668 sequences # 1  
consensus_3218#2 length = 539 sequences # 1  

consensusID : consensus_3218#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 680
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGAATATACCCAACTACAGCAGAAAAAATGCGTTTGCAGCAAAACATTTAAACTTGCGTTGAACTTGAGTTGCTAATTTTGATTTTTATAAGTTTCCCGTTCGTTTTTAGGACTACTGAACAAAAGACACACACACTCTTAGCAATAGTTACATACTTATCCCTTTGTCTGATATTTAATTTTGTTTTTTTTTCTTATTTGTTACTTTATTATTCATTGAATATCTTCTTCTTCTTCTTTGGCACAACAACCGTTGTCGGTCATGGCCTGCCTTGTACCCACACTATAGTGAAGTGAGGCTTTCAGTGACTTATTGTTACCATAGCAGGATAGTCAGTCCTACCGTATATGGGGGCACGGTCTATTCGGAGCTTGAACCCATGACGGGCATGTTATTTTTTCGTACGAGTTGACGACTGTACCACCAGACCGGCCCATTTTATTGAATATACATACAATAAACATATCTTACTAAACATTTGTGAGCAGTAACTACAGTAATAACCGTAATAACACCTCAGTATACTATTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACAACAAACTATTCGCAACGCAACTCAACTTCAATTCATGCAAACATTTTTTTTTTCTCTAC]

[+] EMBL BM595239             [CCGCCCACGCGTCCGCCCACGCGTCCGAATATACCCAACTACAGCAGAAAAAATGCGTTTGCAGCAAAACATTTAAACTTGCGTTGAACTTGAGTTGCTAATTTTGATTTTTATAAGTTTCCCGTTCGTTTTTAGGACTACTGAACAAAAGACACACACACTCTTAGCAATAGTTACATACTTATCCCTTTGTCTGATATTTAATTTTGTTTTTTTTTCTTATTTGTTACTTTATTATTCATTGAATATCTTCTTCTTCTTCTTTGGCACAACAACCGTTGTCGGTCATGGCCTGCCTTGTACCCACACTATAGTGAAGTGAGGCTTTCAGTGACTTATTGTTACCATAGCAGGATAGTCAGTCCTACCGTATATGGGGGCACGGTCTATTCGGAGCTTGAACCCATGACGGGCATGTTATTTTTTCGTACGAGTTGACGACTGTACCACCAGACCGGCCCATTTTATTGAATATACATACAATAAACATATCTTACTAAACATTTGTGAGCAGTAACTACAGTAATAACCGTAATAACACCTCAGTATACTATTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACAACAAACTATTCGCAACGCAACTCAACTTCAATTCATGCAAACATTTTTTTTTTCTCTAC]


>consensus_3218#0 CCGCCCACGCGTCCGCCCACGCGTCCGAATATACCCAACTACAGCAGAAAAAATGCGTTT GCAGCAAAACATTTAAACTTGCGTTGAACTTGAGTTGCTAATTTTGATTTTTATAAGTTT CCCGTTCGTTTTTAGGACTACTGAACAAAAGACACACACACTCTTAGCAATAGTTACATA CTTATCCCTTTGTCTGATATTTAATTTTGTTTTTTTTTCTTATTTGTTACTTTATTATTC ATTGAATATCTTCTTCTTCTTCTTTGGCACAACAACCGTTGTCGGTCATGGCCTGCCTTG TACCCACACTATAGTGAAGTGAGGCTTTCAGTGACTTATTGTTACCATAGCAGGATAGTC AGTCCTACCGTATATGGGGGCACGGTCTATTCGGAGCTTGAACCCATGACGGGCATGTTA TTTTTTCGTACGAGTTGACGACTGTACCACCAGACCGGCCCATTTTATTGAATATACATA CAATAAACATATCTTACTAAACATTTGTGAGCAGTAACTACAGTAATAACCGTAATAACA CCTCAGTATACTATTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACT ACTACTACTACTACTACTACAACAAACTATTCGCAACGCAACTCAACTTCAATTCATGCA AACATTTTTTTTTTCTCTAC



consensusID : consensus_3218#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 668
fasta sequence
                              [CCGCGGACGCGTGGGCTAAGGCATAGCATCGTTGAGTTTGAGTTTATAGGGTGTAAAATAATAAATAAAAGCAGAATAAAGAGTGAATTTGTCAGAACCGTCAGATTTTTTTCAAAATAAAAGTTAAACAGTTTATTAAAACAAAAGATGTTACTTTGGCGGCTTCATTTTTTATCATATTTTACATTATGTTACTGTGCTGGTTTGTTTCAGGATACCAATTGCTCTCCTGTGCTGGTATTGGTTGCCAACGGCAGTGATATCACGATTAATTTTCCCGGAGAAAACAACAACAATCGAGTATTCAGCATTGTCAGTAGCTCTGGTAACAATAATCCATCTATGTTCGATTGGATAGGAGGCAACGGCGCCAACAAAGCACCTACAATATTGCTGGGAAAATCGAATGAGCCTGCAATGCCACCCAGCTTGCCAAAAGATTACAGTGCTGAAGATGATGATACCTTACCTTCAAATCGCAAACCAGTATGGGGAAAACACGGATTAAACGAATTCGAGATAATATAGCAGTTTACGGAGACGATTGGCACAGCGATATTCATCATCCGTGTAGAACGGATTTACGCGTTCACTGAACTCTTCGTGCACGTACGGGTGGGCTGGCGAAGGCCTCGCCAGTGTAACGCGGCAACTCTAGGCGGCGCGGC]

[+] EMBL BM606799             [CCGCGGACGCGTGGGCTAAGGCATAGCATCGTTGAGTTTGAGTTTATAGGGTGTAAAATAATAAATAAAAGCAGAATAAAGAGTGAATTTGTCAGAACCGTCAGATTTTTTTCAAAATAAAAGTTAAACAGTTTATTAAAACAAAAGATGTTACTTTGGCGGCTTCATTTTTTATCATATTTTACATTATGTTACTGTGCTGGTTTGTTTCAGGATACCAATTGCTCTCCTGTGCTGGTATTGGTTGCCAACGGCAGTGATATCACGATTAATTTTCCCGGAGAAAACAACAACAATCGAGTATTCAGCATTGTCAGTAGCTCTGGTAACAATAATCCATCTATGTTCGATTGGATAGGAGGCAACGGCGCCAACAAAGCACCTACAATATTGCTGGGAAAATCGAATGAGCCTGCAATGCCACCCAGCTTGCCAAAAGATTACAGTGCTGAAGATGATGATACCTTACCTTCAAATCGCAAACCAGTATGGGGAAAACACGGATTAAACGAATTCGAGATAATATAGCAGTTTACGGAGACGATTGGCACAGCGATATTCATCATCCGTGTAGAACGGATTTACGCGTTCACTGAACTCTTCGTGCACGTACGGGTGGGCTGGCGAAGGCCTCGCCAGTGTAACGCGGCAACTCTAGGCGGCGCGGC]


>consensus_3218#1 CCGCGGACGCGTGGGCTAAGGCATAGCATCGTTGAGTTTGAGTTTATAGGGTGTAAAATA ATAAATAAAAGCAGAATAAAGAGTGAATTTGTCAGAACCGTCAGATTTTTTTCAAAATAA AAGTTAAACAGTTTATTAAAACAAAAGATGTTACTTTGGCGGCTTCATTTTTTATCATAT TTTACATTATGTTACTGTGCTGGTTTGTTTCAGGATACCAATTGCTCTCCTGTGCTGGTA TTGGTTGCCAACGGCAGTGATATCACGATTAATTTTCCCGGAGAAAACAACAACAATCGA GTATTCAGCATTGTCAGTAGCTCTGGTAACAATAATCCATCTATGTTCGATTGGATAGGA GGCAACGGCGCCAACAAAGCACCTACAATATTGCTGGGAAAATCGAATGAGCCTGCAATG CCACCCAGCTTGCCAAAAGATTACAGTGCTGAAGATGATGATACCTTACCTTCAAATCGC AAACCAGTATGGGGAAAACACGGATTAAACGAATTCGAGATAATATAGCAGTTTACGGAG ACGATTGGCACAGCGATATTCATCATCCGTGTAGAACGGATTTACGCGTTCACTGAACTC TTCGTGCACGTACGGGTGGGCTGGCGAAGGCCTCGCCAGTGTAACGCGGCAACTCTAGGC GGCGCGGC



consensusID : consensus_3218#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 539
fasta sequence
                              [AGAATCGCCCGAGGTTCGATCGTATTTAAAACCGTCTCGTCATAGAAAAGTTTTCCGGTTCGAAAACCATTCCCCCCCGCTGTGTGTTGATTGAAGTAGTATGGAACTTGATGCATTTTTTTAGTGGCGTGCTGGTTTCTTCTTTTAATTTGCACGAAGCGAGATCGATGAACAACATTCCAACGGTTTAACGTGCATTCCGGAATAAAGTAAGTGTTTTCGAAACCTTTTTTTCTTGNNNAACAAATTGCACCGTTCTTGAAACATGATTCGTGTGGTGTCGTACGCTTAAACGAACGGGGGAGGAAACTTAGCCTTCACCGTTGAACGAAAAGGTAGACGTTTATGTACACTCCGACATTGCAAGGAGTGTATCCCGTTATCTAGATTGGGTTTTATTCACTTCCGGCGAAGAATTTAGTACTTTCGTATTGGTTCACTTTTCACGTAACCGTATATCATCCGTATAGAAGGAAGTTGACTCTCATCATCGTGTGGTGTCTTTTAACGTCGAATTGGCTGTGAAAGACGCAAACGGA]

[+] EMBL AL930377             [AGAATCGCCCGAGGTTCGATCGTATTTAAAACCGTCTCGTCATAGAAAAGTTTTCCGGTTCGAAAACCATTCCCCCCCGCTGTGTGTTGATTGAAGTAGTATGGAACTTGATGCATTTTTTTAGTGGCGTGCTGGTTTCTTCTTTTAATTTGCACGAAGCGAGATCGATGAACAACATTCCAACGGTTTAACGTGCATTCCGGAATAAAGTAAGTGTTTTCGAAACCTTTTTTTCTTGNNNAACAAATTGCACCGTTCTTGAAACATGATTCGTGTGGTGTCGTACGCTTAAACGAACGGGGGAGGAAACTTAGCCTTCACCGTTGAACGAAAAGGTAGACGTTTATGTACACTCCGACATTGCAAGGAGTGTATCCCGTTATCTAGATTGGGTTTTATTCACTTCCGGCGAAGAATTTAGTACTTTCGTATTGGTTCACTTTTCACGTAACCGTATATCATCCGTATAGAAGGAAGTTGACTCTCATCATCGTGTGGTGTCTTTTAACGTCGAATTGGCTGTGAAAGACGCAAACGGA]


>consensus_3218#2 AGAATCGCCCGAGGTTCGATCGTATTTAAAACCGTCTCGTCATAGAAAAGTTTTCCGGTT CGAAAACCATTCCCCCCCGCTGTGTGTTGATTGAAGTAGTATGGAACTTGATGCATTTTT TTAGTGGCGTGCTGGTTTCTTCTTTTAATTTGCACGAAGCGAGATCGATGAACAACATTC CAACGGTTTAACGTGCATTCCGGAATAAAGTAAGTGTTTTCGAAACCTTTTTTTCTTGNN NAACAAATTGCACCGTTCTTGAAACATGATTCGTGTGGTGTCGTACGCTTAAACGAACGG GGGAGGAAACTTAGCCTTCACCGTTGAACGAAAAGGTAGACGTTTATGTACACTCCGACA TTGCAAGGAGTGTATCCCGTTATCTAGATTGGGTTTTATTCACTTCCGGCGAAGAATTTA GTACTTTCGTATTGGTTCACTTTTCACGTAACCGTATATCATCCGTATAGAAGGAAGTTG ACTCTCATCATCGTGTGGTGTCTTTTAACGTCGAATTGGCTGTGAAAGACGCAAACGGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3218#1      ------------CCGCGGACGCGTGGGCTAAGGCATAGC-ATCGTTGAGTTTGAGTTTAT 47
consensus_3218#2      ------------------------------------------------------------
consensus_3218#0      CCGCCCACGCGTCCGCCCACGCGTCCGAATATACCCAACTACAGCAGAAAAAATGCGTTT 60
                                                                                  

consensus_3218#1      AGGGTGTAAAATAATAAATAAAAGCAGAATAAAGAGTGAATTTGTCAGAACCGTCAGATT 107
consensus_3218#2      ----------------------------------------------AGAATCGCCCGAGG 14
consensus_3218#0      GCAGCAAAACATTTAAACTTGCGTTGAACTTGAGTTGCTAATTTTGATTTTTATAAGTTT 120
                                                                    *         *   

consensus_3218#1      TTTTTCAAAATAAAAGTTAAACAGTTTATTAAAACAAAAGATGTTACTT-TGGCGGCT-T 165
consensus_3218#2      TTCGATCGTATTTAA---AACCGTCTCGTCATAGAAAAGTTTTCCGGTT-CGAAAACCAT 70
consensus_3218#0      CCCGTTCGTTTTTAG---GACTACTGAACAAAAGACACACACACTCTTAGCAATAGTTAC 177
                                *  *     *          * *   *          *            

consensus_3218#1      -CATTTTTTATCATATTTTACATT-ATGTTACTGTGCTGGTTTGTTTCAGGATACCAATT 223
consensus_3218#2      -TCCCCCCCGCTGTGTGTTG-ATT-GAAGTAGTATGG-AACTTGATGCATTTTTTTAGTG 126
consensus_3218#0      ATACTTATCCCTTTGTCTGATATTTAATTTTGTTTTTTTTTCTTATTTGTTACTTTATTA 237
                                   * * *   ***     *  * *       *  *          * * 

consensus_3218#1      GCTCTCCTGTGCTGGTATTGGTTGCCAACGGCAGTGAT-ATCACGATTAATTTTCCCGGA 282
consensus_3218#2      GC------GTGCTGGTTTCTTCTTTTAATTTGCACGA--AGCGAGATCGAT------GAA 172
consensus_3218#0      TTCATTGAATATCTTCTTCTTCTTCT--TTGGCACAACAACCGTTGTCGGTCATGGCCTG 295
                               *       *    *             *  * *    *   *         

consensus_3218#1      GAAAACAACAACAATCGAGT-ATTCAGCATTGTCAGTAGCTC-TGGTAACAATAATCCAT 340
consensus_3218#2      CAACATTCCAACGGTTTAAC-GTGCATTCCGG--AATAAAGT-AAGTGTTTTCGAAACCT 228
consensus_3218#0      CCTTGTACCCACACTATAGTGAAGTGAGGCTTTCAGTGACTTATTGTTACCATAGCAGGA 355
                              * **  *  *                * *        **             

consensus_3218#1      CTAT--GTTCGATTGGATAGGAGGCAACGGCGCC--AACAAAGCACCTACAATATTGCTG 396
consensus_3218#2      TTTT--TTCTTGNNNAACAAATTGCACCGTTCTTGAAACATGATTCGTGTGGTGTCGTAC 286
consensus_3218#0      TAGTCAGTCCTACCGTATATGGGGGCACGGTCT----ATTCGGAGCTTGAACCCATGACG 411
                         *   *        * *    *   **        *       * *        *   

consensus_3218#1      GGAAAATCGAATGAGCCTGCAATGCCACCCAGCTTGCCAAAAGATTACAGTGCTGAAGAT 456
consensus_3218#2      GCTTAAACGAACGGGGGAGGAAACTTAGCC--TTCACCGTTGAACGAAAAGGTAGACGTT 344
consensus_3218#0      GGCATGTTATTTTTTCGTACGA-GTTGACGACTGTACCACCAGACCGGCCCATTTTATTG 470
                      *                    *      *       **     *                

consensus_3218#1      GATG-ATACCTTACCTT--CAAATCGCAAACCAGTATGGGGAAAACACGGATTAAACGAA 513
consensus_3218#2      TATGTACACTCCGACATTGCAAGGAGTGTATCCCGTTATCTAGATTGGGTTTTATTCACT 404
consensus_3218#0      AATATACATACAATAAACATATCTTACTAAACA-TTTGTGAGCAGTAACTACAGTAATAA 529
                       **  * *            *        * *    *      *                

consensus_3218#1      TTCGA--GATAATATAGCAGTTT---ACGGAGACGATTGGCACAGCGATATTCATCATCC 568
consensus_3218#2      TCCGGCGAAGAATTTAGTACTTTCGTATTGGTTCACTTTTCACGTAACCGTATATCATCC 464
consensus_3218#0      CCGTAATAACACCTCAGTATACTATTACTACTACTACTACTACTACTACTACTACTACTA 589
                              * *    ** *   *   *      *   *   **          *  *   

consensus_3218#1      GTG-TAGAACGGATTTACGCGT--TCACTGAAC--TCTTCGTGCACGTACGGGTGGGCTG 623
consensus_3218#2      GTA-TAGAAGGAAGTTGACTCTCATCATCGTGTGGTGTCTTTTAACGT-CGAATTGGCTG 522
consensus_3218#0      CTACTACTACTACTACTACTACTACTACTACAACAAACTATTCGCAACGCAACTCAACTT 649
                       *  **  *                 *              *       *   *   ** 

consensus_3218#1      GCGAAGGCCTCGCCAGTGTAACGCGGCAACTCTAGGCGGCGCGGC 668
consensus_3218#2      TGAAAGACGCAAACGGA---------------------------- 539
consensus_3218#0      CAATTCATGCAAACATTTTTTTTTTCTCTAC-------------- 680
                                   *                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)