These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3218#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGAATATACCCAACTACAGCAGAAAAAATGCGTTTGCAGCAAAACATTTAAACTTGCGTTGAACTTGAGTTGCTAATTTTGATTTTTATAAGTTTCCCGTTCGTTTTTAGGACTACTGAACAAAAGACACACACACTCTTAGCAATAGTTACATACTTATCCCTTTGTCTGATATTTAATTTTGTTTTTTTTTCTTATTTGTTACTTTATTATTCATTGAATATCTTCTTCTTCTTCTTTGGCACAACAACCGTTGTCGGTCATGGCCTGCCTTGTACCCACACTATAGTGAAGTGAGGCTTTCAGTGACTTATTGTTACCATAGCAGGATAGTCAGTCCTACCGTATATGGGGGCACGGTCTATTCGGAGCTTGAACCCATGACGGGCATGTTATTTTTTCGTACGAGTTGACGACTGTACCACCAGACCGGCCCATTTTATTGAATATACATACAATAAACATATCTTACTAAACATTTGTGAGCAGTAACTACAGTAATAACCGTAATAACACCTCAGTATACTATTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACAACAAACTATTCGCAACGCAACTCAACTTCAATTCATGCAAACATTTTTTTTTTCTCTAC] [+] EMBL BM595239 [CCGCCCACGCGTCCGCCCACGCGTCCGAATATACCCAACTACAGCAGAAAAAATGCGTTTGCAGCAAAACATTTAAACTTGCGTTGAACTTGAGTTGCTAATTTTGATTTTTATAAGTTTCCCGTTCGTTTTTAGGACTACTGAACAAAAGACACACACACTCTTAGCAATAGTTACATACTTATCCCTTTGTCTGATATTTAATTTTGTTTTTTTTTCTTATTTGTTACTTTATTATTCATTGAATATCTTCTTCTTCTTCTTTGGCACAACAACCGTTGTCGGTCATGGCCTGCCTTGTACCCACACTATAGTGAAGTGAGGCTTTCAGTGACTTATTGTTACCATAGCAGGATAGTCAGTCCTACCGTATATGGGGGCACGGTCTATTCGGAGCTTGAACCCATGACGGGCATGTTATTTTTTCGTACGAGTTGACGACTGTACCACCAGACCGGCCCATTTTATTGAATATACATACAATAAACATATCTTACTAAACATTTGTGAGCAGTAACTACAGTAATAACCGTAATAACACCTCAGTATACTATTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACAACAAACTATTCGCAACGCAACTCAACTTCAATTCATGCAAACATTTTTTTTTTCTCTAC] consensusID : consensus_3218#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence [CCGCGGACGCGTGGGCTAAGGCATAGCATCGTTGAGTTTGAGTTTATAGGGTGTAAAATAATAAATAAAAGCAGAATAAAGAGTGAATTTGTCAGAACCGTCAGATTTTTTTCAAAATAAAAGTTAAACAGTTTATTAAAACAAAAGATGTTACTTTGGCGGCTTCATTTTTTATCATATTTTACATTATGTTACTGTGCTGGTTTGTTTCAGGATACCAATTGCTCTCCTGTGCTGGTATTGGTTGCCAACGGCAGTGATATCACGATTAATTTTCCCGGAGAAAACAACAACAATCGAGTATTCAGCATTGTCAGTAGCTCTGGTAACAATAATCCATCTATGTTCGATTGGATAGGAGGCAACGGCGCCAACAAAGCACCTACAATATTGCTGGGAAAATCGAATGAGCCTGCAATGCCACCCAGCTTGCCAAAAGATTACAGTGCTGAAGATGATGATACCTTACCTTCAAATCGCAAACCAGTATGGGGAAAACACGGATTAAACGAATTCGAGATAATATAGCAGTTTACGGAGACGATTGGCACAGCGATATTCATCATCCGTGTAGAACGGATTTACGCGTTCACTGAACTCTTCGTGCACGTACGGGTGGGCTGGCGAAGGCCTCGCCAGTGTAACGCGGCAACTCTAGGCGGCGCGGC] [+] EMBL BM606799 [CCGCGGACGCGTGGGCTAAGGCATAGCATCGTTGAGTTTGAGTTTATAGGGTGTAAAATAATAAATAAAAGCAGAATAAAGAGTGAATTTGTCAGAACCGTCAGATTTTTTTCAAAATAAAAGTTAAACAGTTTATTAAAACAAAAGATGTTACTTTGGCGGCTTCATTTTTTATCATATTTTACATTATGTTACTGTGCTGGTTTGTTTCAGGATACCAATTGCTCTCCTGTGCTGGTATTGGTTGCCAACGGCAGTGATATCACGATTAATTTTCCCGGAGAAAACAACAACAATCGAGTATTCAGCATTGTCAGTAGCTCTGGTAACAATAATCCATCTATGTTCGATTGGATAGGAGGCAACGGCGCCAACAAAGCACCTACAATATTGCTGGGAAAATCGAATGAGCCTGCAATGCCACCCAGCTTGCCAAAAGATTACAGTGCTGAAGATGATGATACCTTACCTTCAAATCGCAAACCAGTATGGGGAAAACACGGATTAAACGAATTCGAGATAATATAGCAGTTTACGGAGACGATTGGCACAGCGATATTCATCATCCGTGTAGAACGGATTTACGCGTTCACTGAACTCTTCGTGCACGTACGGGTGGGCTGGCGAAGGCCTCGCCAGTGTAACGCGGCAACTCTAGGCGGCGCGGC] consensusID : consensus_3218#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 539 fasta sequence [AGAATCGCCCGAGGTTCGATCGTATTTAAAACCGTCTCGTCATAGAAAAGTTTTCCGGTTCGAAAACCATTCCCCCCCGCTGTGTGTTGATTGAAGTAGTATGGAACTTGATGCATTTTTTTAGTGGCGTGCTGGTTTCTTCTTTTAATTTGCACGAAGCGAGATCGATGAACAACATTCCAACGGTTTAACGTGCATTCCGGAATAAAGTAAGTGTTTTCGAAACCTTTTTTTCTTGNNNAACAAATTGCACCGTTCTTGAAACATGATTCGTGTGGTGTCGTACGCTTAAACGAACGGGGGAGGAAACTTAGCCTTCACCGTTGAACGAAAAGGTAGACGTTTATGTACACTCCGACATTGCAAGGAGTGTATCCCGTTATCTAGATTGGGTTTTATTCACTTCCGGCGAAGAATTTAGTACTTTCGTATTGGTTCACTTTTCACGTAACCGTATATCATCCGTATAGAAGGAAGTTGACTCTCATCATCGTGTGGTGTCTTTTAACGTCGAATTGGCTGTGAAAGACGCAAACGGA] [+] EMBL AL930377 [AGAATCGCCCGAGGTTCGATCGTATTTAAAACCGTCTCGTCATAGAAAAGTTTTCCGGTTCGAAAACCATTCCCCCCCGCTGTGTGTTGATTGAAGTAGTATGGAACTTGATGCATTTTTTTAGTGGCGTGCTGGTTTCTTCTTTTAATTTGCACGAAGCGAGATCGATGAACAACATTCCAACGGTTTAACGTGCATTCCGGAATAAAGTAAGTGTTTTCGAAACCTTTTTTTCTTGNNNAACAAATTGCACCGTTCTTGAAACATGATTCGTGTGGTGTCGTACGCTTAAACGAACGGGGGAGGAAACTTAGCCTTCACCGTTGAACGAAAAGGTAGACGTTTATGTACACTCCGACATTGCAAGGAGTGTATCCCGTTATCTAGATTGGGTTTTATTCACTTCCGGCGAAGAATTTAGTACTTTCGTATTGGTTCACTTTTCACGTAACCGTATATCATCCGTATAGAAGGAAGTTGACTCTCATCATCGTGTGGTGTCTTTTAACGTCGAATTGGCTGTGAAAGACGCAAACGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3218#1 ------------CCGCGGACGCGTGGGCTAAGGCATAGC-ATCGTTGAGTTTGAGTTTAT 47 consensus_3218#2 ------------------------------------------------------------ consensus_3218#0 CCGCCCACGCGTCCGCCCACGCGTCCGAATATACCCAACTACAGCAGAAAAAATGCGTTT 60 consensus_3218#1 AGGGTGTAAAATAATAAATAAAAGCAGAATAAAGAGTGAATTTGTCAGAACCGTCAGATT 107 consensus_3218#2 ----------------------------------------------AGAATCGCCCGAGG 14 consensus_3218#0 GCAGCAAAACATTTAAACTTGCGTTGAACTTGAGTTGCTAATTTTGATTTTTATAAGTTT 120 * * consensus_3218#1 TTTTTCAAAATAAAAGTTAAACAGTTTATTAAAACAAAAGATGTTACTT-TGGCGGCT-T 165 consensus_3218#2 TTCGATCGTATTTAA---AACCGTCTCGTCATAGAAAAGTTTTCCGGTT-CGAAAACCAT 70 consensus_3218#0 CCCGTTCGTTTTTAG---GACTACTGAACAAAAGACACACACACTCTTAGCAATAGTTAC 177 * * * * * * * consensus_3218#1 -CATTTTTTATCATATTTTACATT-ATGTTACTGTGCTGGTTTGTTTCAGGATACCAATT 223 consensus_3218#2 -TCCCCCCCGCTGTGTGTTG-ATT-GAAGTAGTATGG-AACTTGATGCATTTTTTTAGTG 126 consensus_3218#0 ATACTTATCCCTTTGTCTGATATTTAATTTTGTTTTTTTTTCTTATTTGTTACTTTATTA 237 * * * *** * * * * * * * consensus_3218#1 GCTCTCCTGTGCTGGTATTGGTTGCCAACGGCAGTGAT-ATCACGATTAATTTTCCCGGA 282 consensus_3218#2 GC------GTGCTGGTTTCTTCTTTTAATTTGCACGA--AGCGAGATCGAT------GAA 172 consensus_3218#0 TTCATTGAATATCTTCTTCTTCTTCT--TTGGCACAACAACCGTTGTCGGTCATGGCCTG 295 * * * * * * * * consensus_3218#1 GAAAACAACAACAATCGAGT-ATTCAGCATTGTCAGTAGCTC-TGGTAACAATAATCCAT 340 consensus_3218#2 CAACATTCCAACGGTTTAAC-GTGCATTCCGG--AATAAAGT-AAGTGTTTTCGAAACCT 228 consensus_3218#0 CCTTGTACCCACACTATAGTGAAGTGAGGCTTTCAGTGACTTATTGTTACCATAGCAGGA 355 * ** * * * * ** consensus_3218#1 CTAT--GTTCGATTGGATAGGAGGCAACGGCGCC--AACAAAGCACCTACAATATTGCTG 396 consensus_3218#2 TTTT--TTCTTGNNNAACAAATTGCACCGTTCTTGAAACATGATTCGTGTGGTGTCGTAC 286 consensus_3218#0 TAGTCAGTCCTACCGTATATGGGGGCACGGTCT----ATTCGGAGCTTGAACCCATGACG 411 * * * * * ** * * * * consensus_3218#1 GGAAAATCGAATGAGCCTGCAATGCCACCCAGCTTGCCAAAAGATTACAGTGCTGAAGAT 456 consensus_3218#2 GCTTAAACGAACGGGGGAGGAAACTTAGCC--TTCACCGTTGAACGAAAAGGTAGACGTT 344 consensus_3218#0 GGCATGTTATTTTTTCGTACGA-GTTGACGACTGTACCACCAGACCGGCCCATTTTATTG 470 * * * ** * consensus_3218#1 GATG-ATACCTTACCTT--CAAATCGCAAACCAGTATGGGGAAAACACGGATTAAACGAA 513 consensus_3218#2 TATGTACACTCCGACATTGCAAGGAGTGTATCCCGTTATCTAGATTGGGTTTTATTCACT 404 consensus_3218#0 AATATACATACAATAAACATATCTTACTAAACA-TTTGTGAGCAGTAACTACAGTAATAA 529 ** * * * * * * * consensus_3218#1 TTCGA--GATAATATAGCAGTTT---ACGGAGACGATTGGCACAGCGATATTCATCATCC 568 consensus_3218#2 TCCGGCGAAGAATTTAGTACTTTCGTATTGGTTCACTTTTCACGTAACCGTATATCATCC 464 consensus_3218#0 CCGTAATAACACCTCAGTATACTATTACTACTACTACTACTACTACTACTACTACTACTA 589 * * ** * * * * * ** * * consensus_3218#1 GTG-TAGAACGGATTTACGCGT--TCACTGAAC--TCTTCGTGCACGTACGGGTGGGCTG 623 consensus_3218#2 GTA-TAGAAGGAAGTTGACTCTCATCATCGTGTGGTGTCTTTTAACGT-CGAATTGGCTG 522 consensus_3218#0 CTACTACTACTACTACTACTACTACTACTACAACAAACTATTCGCAACGCAACTCAACTT 649 * ** * * * * * ** consensus_3218#1 GCGAAGGCCTCGCCAGTGTAACGCGGCAACTCTAGGCGGCGCGGC 668 consensus_3218#2 TGAAAGACGCAAACGGA---------------------------- 539 consensus_3218#0 CAATTCATGCAAACATTTTTTTTTTCTCTAC-------------- 680 * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||