These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3219#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 875 fasta sequence [CCGGTTAAGCGCCGTTCGTTAGCAGAGGATAAAATATGTAGCGGATGTCGTCCAGCATCCGACCATAGTATTGAGAAGCAATGTGTAGCGCGCACGCATTGTGCGTGCTTGAGCATAGGGATCCGATAAAAGTAGATAAACGAAAACTAATATACATTTTGTTCAGCCAGTCCCCCGTTGAACGAGACCCGTTAATGAAAATCGTTGTTATTGGTCACTGAGCGCGTAGTGCGAGTAGCAGCAGTGGTTTGTTGCTGTTAACCCCGACCCCCGAGGTGTGTTAAAACGAATTTATTGTCCTCGAATTTCCTCTTCCTTTTGCACTGACTTTCGACTAAGATGGGCGCGCATTGATGATGCCTCGCGCTCGGGACGCCAAATGTAATTACACTTTATTCGCGCATTCACCTGGTTGGGTAGTAGTTATTCAACTAAAAATGGAAATTCAAACAACAGAAAAAACAAAACTAGAAGAGCAATCTAAATAGTCATGCAAGTGTTAAAATATTTGGATTAAGTTCTGCGTGAGCTTTTGAACACGACCACATGTTTTTATTTTTAATAATAATTACTTCGGTTTTCGCTTGCCATGCCCGGAGTGTCTTTCGGAGATTAAAACCAAAAAAAAAAGAAAATACAAGAGCAAAATGGTATCAGGTGTATTTAGTTTTTACCGGTACCGTTTTGGGCGTTGTTTGATTTCCAATTTCGCTACTATCGTTCTGGATGTGTAGTGTCATACGAGTTGAGTTTGATCGTTTGCTACTGCACAATTGTAACCGTGCTCGTGCAGAAGGAGTAAATCTATTGTTATATGGACCTTGCAATGGACGAATTGTTAAAGAACTGTGCGTCCGATCATTATACAAAAGACA] [+] EMBL BM644002 [CCGGTTAAGCGCCGTTCGTTAGCAGAGGATAAAATATGTAGCGGATGTCGTCCAGCATCCGACCATAGTATTGAGAAGCAATGTGTAGCGCGCACGCATTGTGCGTGCTTGAGCATAGGGATCCGATAAAAGTAGATAAACGAAAACTAATATACATTTTGTTCAGCCAGTCCCCCGTTGAACGAGACCCGTTAATGAAAATCGTTGTTATTGGTCACTGAGCGCGTAGTGCGAGTAGCAGCAGTGGTTTGTTGCTGTTAACCCCGACCCCCGAGGTGTGTTAAAACGAATTTATTGTCCTCGAATTTCCTCTTCCTTTTGCACTGACTTTCGACTAAGATGGGCGCGCATTGATGATGCCTCGCGCTCGGGACGCCAAATGTAATTACACTTTATTCGCGCATTCACCTGGTTGGGTAGTAGTTATTCAACTAAAAATGGAAATTCAAACAACAGAAAAAACAAAACTAGAAGAGCAATCTAAATAGTCATGCAAGTGTTAAAATATTTGGATTAAGTTCTGCGTGAGCTTTTGAACACGACCACATGTTTTTATTTTTAATAATAATTACTTCGGTTTTCGCTTGCCAT ] [+] EMBL BX611570 [ GTCCTCGAATTTCCTCTTCCTTTTGCACTGACTTTCGACTAAGATGGGCGCGCATTGATGATGCCTCGCGCTCGGGACGCCAAATGTAATTACACTTTATTCGCGCATTCACCTGGTTGGGTAGTAGTTATTCAACTAAAAATGGAAATTCAAACAACAGAAAAAACAAAACTAGAAGAGCAATCTAAATAGTCATGCAAGTGTTAAAATATTTGGATTAAGTTCTGCGTGAGCTTTTGAACACGACCATATGTTTTTATTTGTAATAATAATTACTTCGGTTTTCGGTTGCCATGCCCGGAGTGTCTTTCGGAGATTAAAACCAAAAAAAAAAGAAAATACAAGAGCAAAATGGTATCAGGTGTATTTAGTTTTTACCGGTACCGTTTTGGGCGTTGTTTGATTTCCAATTTCGCTACTATCGTTCTGGATGTGTAGTGTCATACGAGTTGAGTTTGATCGTTTGCTACTGCACAATTGTAACCGTGCTCGTGCAGAAGGAGTAAATCTATTGTTATATGGACCTTGCAATGGACGAATTGTTAAAGAACTGTGCGTCCGATCATTATACAAAAGACA] consensusID : consensus_3219#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 830 fasta sequence [CCAAGAATTCGGCACGAGGAAAACAGACGCGCGCATAACCACAGCACAGTTTCTCATGTTCTCGCTGATCTGCTAAGTGTCTACCGAACACGGCCAGAGATAAATAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGGAAGGCCGAACAAAAAGAAGAGGGCTGCTAGGTAAGCCTTTTGTGCAATAAAATCGGTGGGTGTAGAATTAGGTTTTAGTGGGATAAAAGTAACTATGAAACAAACAAATCCCACCCCACACAAGTACACGTACACACACTCACTATAAAGAGGCCATCGCCGCCCGATCATCGTAACGTGGCGCGCTGTACAGAGAGGGTTAGCTGTTACCCTGGAGCGCTCCGGGTGCGTGTGCAAATGTAAATGTGCTGGCAAAAGGGTGGAGACGATACACTACTTTCCTTCCGCCAAAGGGCGCCATTCGTTACAGCAGCAGCAAATGCTTTAGTAGAAGAAATCGTTCCACAAACACACACACACATCCAGCATACAAACAGTAAAAGCTCACTCGACAACAAGCAAAAACAGTGTAGGCAAAAGGAGATTCGTTGACNGCTGCATCCCGTTCACAGNNTTCCAGTTGGCATGNNTTCCGAAGGAGGAAAAAAGGAAGGACACAGNAGGAGGAGGACTAANATTGGGGTCAAGAGTTTGGCCCAACAGGGAAACTGANAAAAGGCCTTTCCAATCTGGTGCCAGGGGCCGAAAAANTCCNAAGGGAATACCACTTNGGGAAGAGCNCACCAACGCAGANAAGCCGAGCGGCCAGGGAACCANNNTTCTCATTAACGCGCACTCTT] [+] EMBL BX467568 [CCAAGAATTCGGCACGAGGAAAACAGACGCGCGCATAACCACAGCACAGTTTCTCATGTTCTCGCTGATCTGCTAAGTGTCTACCGAACACGGCCAGAGATAAATAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGGAAGGCCGAACAAAAAGAAGAGGGCTGCTAGGTAAGCCTTTTGTGCAATAAAATCGGTGGGTGTAGAATTAGGTTTTAGTGGGATAAAAGTAACTATGAAACAAACAAATCCCACCCCACACAAGTACACGTACACACACTCACTATAAAGAGGCCATCGCCGCCCGATCATCGTAACGTGGCGCGCTGTACAGAGAGGGTTAGCTGTTACCCTGGAGCGCTCCGGGTGCGTGTGCAAATGTAAATGTGCTGGCAAAAGGGTGGAGACGATACACTACTTTCCTTCCGCCAAAGGGCGCCATTCGTTACAGCAGCAGCAAATGCTTTAGTAGAAGAAATCGTTCCACAAACACACACACACATCCAGCATACAAACAGTAAAAGCTCACTCGACAACAAGCAAAAACAGTGTAGGCAAAAGGAGATTCGTTGACNGCTGCATCCCGTTCACAGNNTTCCAGTTGGCATGNNTTCCGAAGGAGGAAAAAAGGAAGGACACAGNAGGAGGAGGACTAANATTGGGGTCAAGAGTTTGGCCCAACAGGGAAACTGANAAAAGGCCTTTCCAATCTGGTGCCAGGGGCCGAAAAANTCCNAAGGGAATACCACTTNGGGAAGAGCNCACCAACGCAGANAAGCCGAGCGGCCAGGGAACCANNNTTCTCATTAACGCGCACTCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3219#0 CCGGTTAAGCGCCGTTCGTTAGCAGAGGATAAAATATGTA-GCGGATGTCGTCCAGCATC 59 consensus_3219#1 ----CCAAGA---ATTCGGCACGAGGAAAACAGACGCGCGCATAACCACAGCACAGTTTC 53 *** **** * ** * * * * * *** ** consensus_3219#0 CGACCATAGTATTGAGAAGC--AATGTGTAGCGCGCACGCATTGTGCGTGCTTGAGCATA 117 consensus_3219#1 TCATGTTCTCGCTGATCTGCTAAGTGTCTACCGAACACG-GCCAGAGATAAATAGACAGA 112 * * *** ** * *** ** ** **** * * ** * consensus_3219#0 GGGATCC-GATAAAAGTAGATAAACGAAAACTAATATACATTTTGTTCAGCCAGTCCC-- 174 consensus_3219#1 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGGAAGGCCGAACAAAAAGAAGAGG 172 * ** ** * * *** * * * * *** * * ** ** consensus_3219#0 -CCGTTGAACGAGACCCGTTAATGAAAATCGTTGTTATTGGTCACTGAGCGCGTAGTGCG 233 consensus_3219#1 GCTGCTAGGTAAGCCTTTTGTGCAATAAAATCGGTGGGTGTAGAATTAGGTTTTAGTGGG 232 * * * ** * * * ** ** ** * * ** ***** * consensus_3219#0 AGTAGCAGCAGTGGTTTGTTGCTGTTAACCCCGACCCCCG-AGGTGTGTTAAAACGAATT 292 consensus_3219#1 A-TAAAAGTAACTATGAAACAA-ACAAATCCCACCCCACACAAGTACACGTACACACACT 290 * ** ** * * ** *** *** * * ** * ** * * consensus_3219#0 TATTGTCCTCGAATT-TCCTCTTCCTTTTGCACTGACTTT-CGACTAAGATGGGCGCGCA 350 consensus_3219#1 CACTATAAAGAGGCCATCGCCGCCCGATCATCGTAACGTGGCGCGCTGTACAGAGAGGGT 350 * * * ** * ** * * ** * ** * * * consensus_3219#0 TTGATGATGCCTCG---CGCTCGGGACGC-----CAAATGTAATTACACTTTATTCGCGC 402 consensus_3219#1 TAGCTGTTACCCTGGAGCGCTCCGGGTGCGTGTGCAAATGTAAATGTGCTG-GCAAAAGG 409 * * ** * ** * ***** ** ** ********* * ** * consensus_3219#0 ATTCACCTGGTTGGGTAGTAGTTATTCAACTAAAAATGGAAATTCAAACAACAGAAAAAA 462 consensus_3219#1 GTGGAGACGATACACTACTTTCCTTCCGCCAAAGGGCGCCATTCGTTACAGCAGCAGCAA 469 * * * * ** * * * * ** * * * *** *** * ** consensus_3219#0 CAAAACTAGAAGAGCAATCTAAATAGTCATGCAAGTGTTAAAATATTTGGATTAAGTTCT 522 consensus_3219#1 ATGCTTTAGTAGAAGAAATCGT---TCCACAAACACACACACACATCCAGCATACAAACA 526 *** *** ** ** * * * ** * ** * consensus_3219#0 GCGTGAGCTT--TTGAACACGACCACATGTTTTTATTTTTAATAATAATTACTTCGGTTT 580 consensus_3219#1 GTAAAAGCTCACTCGACAACAAGCA-AAAACAGTGTAGGCAAAAGGAGATTCGTTGACNG 585 * **** * ** ** * ** * * * ** * * * * * * consensus_3219#0 TCGCTTGCCATGCCCGGAGTGTCTTTCGGAGATTAAAACCAAAAAAAAAAGAAAATACAA 640 consensus_3219#1 CTGCATCCCGTTCACAGNNTTCCAGTTGGC-ATGNNTTCCGAAGGAGGAAAAAAG----- 639 ** * ** * * * * * * * ** ** ** ** * ** *** consensus_3219#0 GAGCAAAATGGTATCAGGTGTATTTAGTTTTTACCGGTACCGTTTTGGGCGTTGTTTGAT 700 consensus_3219#1 GAAGGACACAGNAGGAGGAGGACTAANATTGGG--------GTCAAGAGTTTGGCCCAAC 691 ** * * * * *** * * * * ** ** * * * * * consensus_3219#0 TTCCAATTTCGCTACTATCGTTCTGGATGTGTAGTGTCATACGAGTTGAGTTTGATCGTT 760 consensus_3219#1 AGGGAAACTGANAAAAGGCCTTTCCAATCTG--GTGCCAGGGGCCGAAAAANTCCNAAGG 749 ** * * * ** ** ** *** ** * * * consensus_3219#0 TGCTACTGCACAATTGTAACCGTGCTCGTGCAGAAGGAGTAAATCTATTGTTATATGGAC 820 consensus_3219#1 GAATACCACTTNGGGAAGAGCNCACCAACGCAGANAAGCCGAGCGGCCAGGGAACCANNN 809 *** * * * * ***** * * * consensus_3219#0 CTTGCAATGG-ACGAATTGTTAAAGAACTGTGCGTCCGATCATTATACAAAAGACA 875 consensus_3219#1 TTCTCATTAACGCGCACTCTT----------------------------------- 830 * ** * ** * * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||