These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3227#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 961 fasta sequence [TTAGACAAGACAAGATGTAACAACAAGCAAGACAAGCGGCATACAGCAGCAAGATGGCAAAACTACTACGTCTGGCAGCTCTGGCAGTGGTGCTGGCGGCCCTGGTCGCAGCTAAACCGTCCCGACCGAAGATCGTCGGGGGTGAGGAAGCGATCGCGCACGAGTTCCCCTACCAGATCTCGCTGAGTGGAACTACAACAACGACGAGCAGGATCCATTCCACTTCTGTGGCGGTTCGCTGATCGCTGAAAAGTTCGTGCTGACTGCTGGCCACTGCGTACCGAGTGCGATTTCGCCCGATGGCTTCCCGGAGGCCGTTGCCGGCGAGCACGACTTCAGCCAGTACGATGCAGGAGTACAGCGTCGTCGCATCGCCGAGATGTACGTGCACGAGGACTACGAGGGTAGCGTTGGGCCCAACGATATTGCCATTTTCCGTGTCGACAAGCCGTTCCATCTGAATCGCAACATCCAGCTGGTCACGCTGCCGGAACCGAACGCTATCCCAACGGGCGAAACCACCATCAGCGGATGGGGATCGACATCCTTCTCCTTTGAGCCCTCCTATCCGAACATCCTCATGAAAACTACCCTCCCGATCATGGATTTGGAAGTGTGCCGTAAGATCTACTTCACGGAGACTGTTGCGGACAGCAACATCTGTGCCGGTACCATGGAAGGCACCTCGAGCGTCTGCTCGGGAGACTCCGGCGGCCCGCTGGTCCAGATCGACGACGAGATCGTGCAGGTTGGCATCGTGTCCTGGGGAGGTATTCCGTGCGGCGGTTACAAAAACCCGGGTGTTTTCGTTCGTGTTTCGTACTTTATTGACTGGATCAATGACAAAATCAACAATTGAATTACAATGGGCGCGTGATCGATGAACAATGTCCTACGCGAATTAAGGCTTCAAATGAAGTGCTACCCTAAAAAAAAAAAAAAATTAAAAAAAAAAGGGCCC] [+] EMBL CNS092ZM [TTAGACAAGACAAGATGTAACAACAAGCAAGACAAGCGGCATACAGCAGCAAGATGGCAAAACTACTACGTCTGGCAGCTCTGGCAGTGGTGCTGGCGGCCCTGGTCGCAGCTAAACCGTCCCGACCGAAGATCGTCGGGGGTGAGGAAGCGATCGCGCACGAGTTCCCCTACCAGATCTCGCTGAGTGGAACTACAACAACGACGAGCAGGATCCATTCCACTTCTGTGGCGGTTCGCTGATCGCTGAAAAGTTCGTGCTGACTGCTGGCCACTGCGTACCGAGTGCGATTTCGCCCGATGGCTTCCCGGAGGCCGTTGCCGGCGAGCACGACTTCAGCCAGTACGATGCAGGAGTACAGCGTCGTCGCATCGCCGAGATGTACGTGCACGAGGACTACGAGGGTAGCGTTGGGCCCAACGATATTGCCATTTTCCGTGTCGACAAGCCGTTCCATCTGAATCGCAACATCCAGCTGGTCACGCTGCCGGAACCGAACGCTATCCCAACGGGCGAAACCACCATCAGCGGATGGGGATCGACATCCTTCTCCTTTGAGCCCTCCTATCCGAACATCCTCATGAAAACTACCCTCCCGATCATGGATTTGGAAGTGTGCCGTAAGATCTACTTCACGGAGACTGTTGCGGACAGCAACATCTGTGCCGGTACCATGGAAGGCACCTCGAGCGTCTGCTCGGGAGACTCCGGCGGCCCGCTGGTCCAGATCGACGACGAGATCGTGCAGGTTGGCATCGTGTCCTGGGGAGGTATTCCGTGCGGCGGTTACAAAAACCCGGGTGTTTTCGTTCGTGTTTCGTACTTTATTGACTGGATCAATGACAAAATCAACAATTGAATTACAATGGGCGCGTGATCGATGAACAATGTCCTACGCGAATTAAGGCTTCAAATGAAGTGCTACCCTAAAAAAAAAAAAAAATTAAAAAAAAAAGGGCCC] consensusID : consensus_3227#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 330 fasta sequence [CAGTTGTTTTTTTTACCGGCCTTATACAACGAACACGGGGAATTAGCGGAAAAATACCGATCGTTCACTTAGTTGCTGCTTACTTCTTCTTGGATACACCGACGGTACGACCGCGGCGACCGGTTATTTTTCGTGTTCTGACCACGGACACGCAGACCCCAGTTGTGGCGCATACCGCGATGAGCGTGAATTCGCTTCAGTCGCTCCAGATCTTCACGAAGCTTGGAGTTAATTTTCGACGAGGTCAGTTGCATGTTCTTTCCATCGACGATGTTCTTCTTTTTGTTGAGGAACCAGTTCGGGATTTTGTAGTTACGCGGGTTCGAGATG] [+] EMBL CNS08T49 [CAGTTGTTTTTTTTACCGGCCTTATACAACGAACACGGGGAATTAGCGGAAAAATACCGATCGTTCACTTAGTTGCTGCTTACTTCTTCTTGGATACACCGACGGTACGACCGCGGCGACCGGT ] [+] EMBL CNS08L1G [ CGTTCACTTAGTTGCTGCTTACTTCTTCTTGGATACACCGACGGTACGACCGCGGCGACCGTGTATTTTTCGTGTTCTGACCACGGACACGCAGACCCCAGTTGTGGCGCATACCGCGATGAGCGTGAATTCGCTTCAGTCGCTCCAGATCTTCACGAAGCTTGGAGTTAATTTTCGACGAGGTCAGTTGCATGTTCTTTCCATCGACGATGTTCTTCTTTTTGTTGAGGAACCAGTTCGGGATTTTGTAGTTACGCGGGTTCGAGATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3227#0 TTAGACAAGACAAGATGTAACAACAAGCAAGACAAGCGGCATACAGCAGCAAGATGGCAA 60 consensus_3227#1 ------------------------------------------------------------ consensus_3227#0 AACTACTACGTCTGGCAGCTCTGGCAGTGGTGCTGGCGGCCCTGGTCGCAGCTAAACCGT 120 consensus_3227#1 ---------------------------------CAGTTGTTTTTTTTACCGGCCTTATAC 27 * * * * * * consensus_3227#0 CCCGACCGAAGATCGTCGGGGGTGAGGAAGCGATCGCGCACGAGTTCCCCTACCAGATCT 180 consensus_3227#1 AACGAACACGGGGAATTAGCGGAAAAATACCGATCGTTCACTTAGTTGCTGCTTACTTCT 87 *** * * * * ** * * ****** *** * * * *** consensus_3227#0 CGCTGAGTGGAACTACAACAACGACGAGCAGGATCCATTCCACTTCTGTGGCGGTTCGCT 240 consensus_3227#1 TCTTGGATACACCGACGGTA-CGACCGCGGCGACCGGTTATTTTTC-------GTGTTCT 139 ** * * * ** * **** ** * ** *** ** ** consensus_3227#0 GATCGCTGAAAAGTTCGTGCTGACTGCTGGCCACTGCGTACCGAGTGCGATTTCGCC-CG 299 consensus_3227#1 GACCACGGACACGCAGACCCCAGTTGTGGCGCATACCGCGATGAGCGTGAATTCGCTTCA 199 ** * * ** * * * ** * ** ** *** * ** ***** * consensus_3227#0 ATGGCTTCCCGGAGGCCGTTGCCGGCGAGCACGACTTCAGCCAGTACGATGCAGGAGTAC 359 consensus_3227#1 GTCGCTCC----AGATCTTCAC--GAAGCTTGGAGTTAATTTTCGACGAGGTCAGT-TGC 252 * *** * ** * * * * ** ** * **** * * * * consensus_3227#0 AGCGTCGTCGCATCGCCGAGATGTACGTGCACGAGGACTACGAGGGTAGCGTTGGGCCCA 419 consensus_3227#1 ATGTTCTTTCCATCGACGATGTTCTTCTTTTTGT------TGAGGAACCAGTTCGG---- 302 * ** * ***** *** * * * **** *** ** consensus_3227#0 ACGATATTGCCATTTTCCGTGTCGACAAGCCGTTCCATCTGAATCGCAACATCCAGCTGG 479 consensus_3227#1 --GATTTTGTAGTTACGCGGGTT--CGAGATG---------------------------- 330 *** *** ** ** ** * ** * consensus_3227#0 TCACGCTGCCGGAACCGAACGCTATCCCAACGGGCGAAACCACCATCAGCGGATGGGGAT 539 consensus_3227#1 ------------------------------------------------------------ consensus_3227#0 CGACATCCTTCTCCTTTGAGCCCTCCTATCCGAACATCCTCATGAAAACTACCCTCCCGA 599 consensus_3227#1 ------------------------------------------------------------ consensus_3227#0 TCATGGATTTGGAAGTGTGCCGTAAGATCTACTTCACGGAGACTGTTGCGGACAGCAACA 659 consensus_3227#1 ------------------------------------------------------------ consensus_3227#0 TCTGTGCCGGTACCATGGAAGGCACCTCGAGCGTCTGCTCGGGAGACTCCGGCGGCCCGC 719 consensus_3227#1 ------------------------------------------------------------ consensus_3227#0 TGGTCCAGATCGACGACGAGATCGTGCAGGTTGGCATCGTGTCCTGGGGAGGTATTCCGT 779 consensus_3227#1 ------------------------------------------------------------ consensus_3227#0 GCGGCGGTTACAAAAACCCGGGTGTTTTCGTTCGTGTTTCGTACTTTATTGACTGGATCA 839 consensus_3227#1 ------------------------------------------------------------ consensus_3227#0 ATGACAAAATCAACAATTGAATTACAATGGGCGCGTGATCGATGAACAATGTCCTACGCG 899 consensus_3227#1 ------------------------------------------------------------ consensus_3227#0 AATTAAGGCTTCAAATGAAGTGCTACCCTAAAAAAAAAAAAAAATTAAAAAAAAAAGGGC 959 consensus_3227#1 ------------------------------------------------------------ consensus_3227#0 CC 961 consensus_3227#1 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||