These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3230#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 670 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGAGACAACGGAAAGTTGGCAGTATTGTGTCAGTTGTAGTAGCGTTGCAGTTATCCGCTCAAAATGAAAGCGCTCACGTGCGGTTTGGTGATTTTTCTTAGCGTTTCGGTGGTGCTGATTTATGGCGATAGTCGCCAGTGGGGTCGCCGAGTGTCTGGAGATCGTCTGCTCGATTATGCCGTGGTCGTGAACAACTCGCTGCCAGTGCCGGAGAAGAGCAGCATCTATCGCTATCTTCCTGCTGCGGGAGCGTACCGGCCACCGAACATTACGGCTATCTTCACCCGTGATAACGTGCCGGGCGGCAAAGGTGGCTTTGCGGGAATCGTTTCCGGTGGAGTGAACGGATCGAATGTGACGCTGAAACTTACCTCCAAACCGTACCAGCGGTTTAACTTTACGATCGAGATTTACGGAAAGTAACGCTGTAAGAGAATAAAAGGCACGAAACTGATTTTCAGCCTCTCCACGCGTGAAGCATTTACAATCCATTCGCGTTTGCATCTGCACTGCGTCCTATACCGATTCCGCTTCGGTAGGGATACTTCGCGGCACTCAAATTTATTATTCAACTAAATGAAAGCATTATTGCAGTGGGAGTGAGAGAGGGAGAGAGTAAAACAAAAACAAATC] [+] EMBL BM578354 [CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGAGACAACGGAAAGTTGGCAGTATTGTGTCAGTTGTAGTAGCGTTGCAGTTATCCGCTCAAAATGAAAGCGCTCACGTGCGGTTTGGTGATTTTTCTTAGCGTTTCGGTGGTGCTGATTTATGGCGATAGTCGCCAGTGGGGTCGCCGAGTGTCTGGAGATCGTCTGCTCGATTATGCCGTGGTCGTGAACAACTCGCTGCCAGTGCCGGAGAAGAGCAGCATCTATCGCTATCTTCCTGCTGCGGGAGCGTACCGGCCACCGAACATTACGGCTATCTTCACCCGTGATAACGTGCCGGGCGGCAAAGGTGGCTTTGCGGGAATCGTTTCCGGTGGAGTGAACGGATCGAATGTGACGCTGAAACTTACCTCCAAACCGTACCAGCGGTTTAACTTTACGATCGAGATTTACGGAAAGTAACGCTGTAAGAGAATAAAAGGCACGAAACTGATTTTCAGCCTCTCCACGC ] [+] EMBL BM600880 [ ccgGTTATCCGCTCAAAATGAAAGCGCTCACGTGTTGTTTGGTGATTGTTCTTAGCGTTTCGGTGGTGCTGATTTATGGCGATAGTCGCCAGTGGGGTCGCCGAGTGTCTGGAGATCGTCTGCTCGATTATGCCGTGGTCGTGAACAACTCGCTGCCAGTGCCGGAGAAGAGCAGCATCTATCGCTATCTTCCTGCTGCGGGAGCGTACCGGCCACCGAACATTACGGCTATCTTCACCCGTGATAACGTGCCGGGCGGCAAAGGTGGCTTTGCGGGAATCGTGTCCGGTGGAGTGAACCAATCGAACGTGACGCTGAAACTTACCTCCAAACCGTACCAGCGGTTTAACTTTACGATCGAGATTTACGGAAAGTAACGCTGTAAGAGAATAAAAGGCACGAAACTGATTTTCAGCCTCTCCACGCGTGAAGCATTTACAATCCATTCGCGTTTGCATCTGCACTGCGTCCTATACCGATTCCGCTTCGGTAGGGATACTTCGCGGCACTCAAATTTATTATTCAACTAAATGAAAGCATTATTGCAGTGGGAGTGAGAGAGGGAGAGAGTAAAACAAAAACAAATC] consensusID : consensus_3230#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 87 fasta sequence [GGTGACGAGATGTTCACGGACACCCACAAGGTCAAGCTGGTGGACGATGTCATGTACGATGTGCACGGCAAGCACGCGCTCCCGCAC] [+] EMBL CNS09CDZ [GGTGACGAGATGTTCACGGACACCCACAAGGTCAAGCTGGTGGACGATGTCATGTACGATGTGCACGGCAAGCACGCGCTCCCGCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3230#0 CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGAGACAACGGAAAGTTGGCAGT 60 consensus_3230#1 -----------------------------GGTGACGAGATGTTCACGGACA-CCCACAAG 30 * * * * ***** * ** consensus_3230#0 ATTGTGTCAGTTGTAGTAGCGTTGCAGTTATCCGCTCAAAATGAAAGCGCTCACGTGCGG 120 consensus_3230#1 GTCAAGCTGGTGGACGATGTCATGTA-CGATGTGCACGGCAAGCACGCGCTCCCGCAC-- 87 * * ** * * * ** * ** ** * * * * ****** ** * consensus_3230#0 TTTGGTGATTTTTCTTAGCGTTTCGGTGGTGCTGATTTATGGCGATAGTCGCCAGTGGGG 180 consensus_3230#1 ------------------------------------------------------------ consensus_3230#0 TCGCCGAGTGTCTGGAGATCGTCTGCTCGATTATGCCGTGGTCGTGAACAACTCGCTGCC 240 consensus_3230#1 ------------------------------------------------------------ consensus_3230#0 AGTGCCGGAGAAGAGCAGCATCTATCGCTATCTTCCTGCTGCGGGAGCGTACCGGCCACC 300 consensus_3230#1 ------------------------------------------------------------ consensus_3230#0 GAACATTACGGCTATCTTCACCCGTGATAACGTGCCGGGCGGCAAAGGTGGCTTTGCGGG 360 consensus_3230#1 ------------------------------------------------------------ consensus_3230#0 AATCGTTTCCGGTGGAGTGAACGGATCGAATGTGACGCTGAAACTTACCTCCAAACCGTA 420 consensus_3230#1 ------------------------------------------------------------ consensus_3230#0 CCAGCGGTTTAACTTTACGATCGAGATTTACGGAAAGTAACGCTGTAAGAGAATAAAAGG 480 consensus_3230#1 ------------------------------------------------------------ consensus_3230#0 CACGAAACTGATTTTCAGCCTCTCCACGCGTGAAGCATTTACAATCCATTCGCGTTTGCA 540 consensus_3230#1 ------------------------------------------------------------ consensus_3230#0 TCTGCACTGCGTCCTATACCGATTCCGCTTCGGTAGGGATACTTCGCGGCACTCAAATTT 600 consensus_3230#1 ------------------------------------------------------------ consensus_3230#0 ATTATTCAACTAAATGAAAGCATTATTGCAGTGGGAGTGAGAGAGGGAGAGAGTAAAACA 660 consensus_3230#1 ------------------------------------------------------------ consensus_3230#0 AAAACAAATC 670 consensus_3230#1 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||