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Anopheles gambiae
cluster # 3232 cluster # 3232       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3232#0 length = 1243 sequences # 1  
consensus_3232#1 length = 597 sequences # 1  
consensus_3232#2 length = 220 sequences # 1  

consensusID : consensus_3232#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1243
fasta sequence
                              [CCGCAGGTTAAGAGTAAACATACCAAAACAATATGTTTTTATCATTGGTGCTACACACANAACTAAACACAATCTTCAACAAGTTTATCTATTGTTGACAAAGTTTGGNGCCGAGCAAAGCAAAACAAAAAATCTTTCCTTGATAGATCGGAAAGACAGTCTAATAGATATACCTCCTGGCCTGATGACAGTACCATACCTGGTGCTGGTTTCATAACTTGCTTTGTTATACAAGAGTAANTCTGACGCACTTGCCACCTAGGCTAACAATCCAGAAAAGTGTACTGAGGTTTAACANAAAACTCAGNTTAAATACANCACAGCAANCTTAAGCGCCCTCAAATTACTTTCACTACNAAGCACTACCGCAGCTAATTAACNACTTGAAGTTTGGGTANTAANTACACTGGGACTTACCGCACAACACTAAACGGGGCCGAGGTACCCGCCTCACAATTCATTACTTAAATAAACTNACACAGAACCGGTGTNATTAGTGCCCAAGAGGAAACANCTCNCACAANGTGGATNGGCACACAACAATTCCAGGACAAAAGGNCCCAAACACAGATTTATGGGNCAGGCANNCAAGACAGCCCCCGCCATACNGGAGAAACGTNCCACAAGCAACGGTANTGACCACACCTCCAAAGCGGGCGAAAACNAAGGAANCACCAAGTTAGGGGCTGACGGCACAANGGCGGGCANACNAGCATATATACCCCAGGGGGAACGCGGGACATGTNGGTTGGCGCACCATTCAGAAAAATGGGCATNACCGGNACACAACANCTAACCTTACCCCGAGTACGGCGCGAACAACGGGTAACCAAGCAACGGTTGTATAAACACNAGGGGCTNCCACTAGAGAGACGAACACGNCGGNNGAAAACAAGAGACCAACACANACCCCGGGGGCGCANCGGGAACTCACANCNGGGGACNCAACCCCGCCCAACNACCCGGGCCACCTCTCCAAGCGTAATTAANATNNGCACACGGGCGACACNNGCCGGGGCCANTACACACCANCAACTGGGAACACNGGCACGGGAAGNNCATAACATANGNCGTNACCCNTAAACNCANAACCCATNGGGGGCCTACACNCGGCCCCACGCCCAGACCCAGCCNCANGGCCGCCAGCCCACCATCAGGNTGCCNCACACAACACCAGCGCCNCNAAGCAACCTCAGNAAACNCNGGCNACANCCCACACCGCGGTAGGCGCAANAACGGNACC]

[+] EMBL AL694929             [CCGCAGGTTAAGAGTAAACATACCAAAACAATATGTTTTTATCATTGGTGCTACACACANAACTAAACACAATCTTCAACAAGTTTATCTATTGTTGACAAAGTTTGGNGCCGAGCAAAGCAAAACAAAAAATCTTTCCTTGATAGATCGGAAAGACAGTCTAATAGATATACCTCCTGGCCTGATGACAGTACCATACCTGGTGCTGGTTTCATAACTTGCTTTGTTATACAAGAGTAANTCTGACGCACTTGCCACCTAGGCTAACAATCCAGAAAAGTGTACTGAGGTTTAACANAAAACTCAGNTTAAATACANCACAGCAANCTTAAGCGCCCTCAAATTACTTTCACTACNAAGCACTACCGCAGCTAATTAACNACTTGAAGTTTGGGTANTAANTACACTGGGACTTACCGCACAACACTAAACGGGGCCGAGGTACCCGCCTCACAATTCATTACTTAAATAAACTNACACAGAACCGGTGTNATTAGTGCCCAAGAGGAAACANCTCNCACAANGTGGATNGGCACACAACAATTCCAGGACAAAAGGNCCCAAACACAGATTTATGGGNCAGGCANNCAAGACAGCCCCCGCCATACNGGAGAAACGTNCCACAAGCAACGGTANTGACCACACCTCCAAAGCGGGCGAAAACNAAGGAANCACCAAGTTAGGGGCTGACGGCACAANGGCGGGCANACNAGCATATATACCCCAGGGGGAACGCGGGACATGTNGGTTGGCGCACCATTCAGAAAAATGGGCATNACCGGNACACAACANCTAACCTTACCCCGAGTACGGCGCGAACAACGGGTAACCAAGCAACGGTTGTATAAACACNAGGGGCTNCCACTAGAGAGACGAACACGNCGGNNGAAAACAAGAGACCAACACANACCCCGGGGGCGCANCGGGAACTCACANCNGGGGACNCAACCCCGCCCAACNACCCGGGCCACCTCTCCAAGCGTAATTAANATNNGCACACGGGCGACACNNGCCGGGGCCANTACACACCANCAACTGGGAACACNGGCACGGGAAGNNCATAACATANGNCGTNACCCNTAAACNCANAACCCATNGGGGGCCTACACNCGGCCCCACGCCCAGACCCAGCCNCANGGCCGCCAGCCCACCATCAGGNTGCCNCACACAACACCAGCGCCNCNAAGCAACCTCAGNAAACNCNGGCNACANCCCACACCGCGGTAGGCGCAANAACGGNACC]


>consensus_3232#0 CCGCAGGTTAAGAGTAAACATACCAAAACAATATGTTTTTATCATTGGTGCTACACACAN AACTAAACACAATCTTCAACAAGTTTATCTATTGTTGACAAAGTTTGGNGCCGAGCAAAG CAAAACAAAAAATCTTTCCTTGATAGATCGGAAAGACAGTCTAATAGATATACCTCCTGG CCTGATGACAGTACCATACCTGGTGCTGGTTTCATAACTTGCTTTGTTATACAAGAGTAA NTCTGACGCACTTGCCACCTAGGCTAACAATCCAGAAAAGTGTACTGAGGTTTAACANAA AACTCAGNTTAAATACANCACAGCAANCTTAAGCGCCCTCAAATTACTTTCACTACNAAG CACTACCGCAGCTAATTAACNACTTGAAGTTTGGGTANTAANTACACTGGGACTTACCGC ACAACACTAAACGGGGCCGAGGTACCCGCCTCACAATTCATTACTTAAATAAACTNACAC AGAACCGGTGTNATTAGTGCCCAAGAGGAAACANCTCNCACAANGTGGATNGGCACACAA CAATTCCAGGACAAAAGGNCCCAAACACAGATTTATGGGNCAGGCANNCAAGACAGCCCC CGCCATACNGGAGAAACGTNCCACAAGCAACGGTANTGACCACACCTCCAAAGCGGGCGA AAACNAAGGAANCACCAAGTTAGGGGCTGACGGCACAANGGCGGGCANACNAGCATATAT ACCCCAGGGGGAACGCGGGACATGTNGGTTGGCGCACCATTCAGAAAAATGGGCATNACC GGNACACAACANCTAACCTTACCCCGAGTACGGCGCGAACAACGGGTAACCAAGCAACGG TTGTATAAACACNAGGGGCTNCCACTAGAGAGACGAACACGNCGGNNGAAAACAAGAGAC CAACACANACCCCGGGGGCGCANCGGGAACTCACANCNGGGGACNCAACCCCGCCCAACN ACCCGGGCCACCTCTCCAAGCGTAATTAANATNNGCACACGGGCGACACNNGCCGGGGCC ANTACACACCANCAACTGGGAACACNGGCACGGGAAGNNCATAACATANGNCGTNACCCN TAAACNCANAACCCATNGGGGGCCTACACNCGGCCCCACGCCCAGACCCAGCCNCANGGC CGCCAGCCCACCATCAGGNTGCCNCACACAACACCAGCGCCNCNAAGCAACCTCAGNAAA CNCNGGCNACANCCCACACCGCGGTAGGCGCAANAACGGNACC



consensusID : consensus_3232#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 597
fasta sequence
                              [GCAAGATCGNCACGAGGTCGCAAATCATCTTCCTGGTGCTGCTGTTCGCCTACATGGTGTTCATGATGTTCATGAAGTGGATCGCGTATACAGCCAAAACCGACTACCAGCCCCGCACGCCCGGCTGCGCCCCGTTCCGTGCTGATTATGTTCATCAACATGATGCTGTTTAAAAACTCCGAACCCTTCCACGGCTGCGACGAGTTCATGTTCGAGGGCCAGAACGAGCTGCAGCGCACGTTCGTGTTCATTGCGCTGCTCTGCATTCCCTGGATGCTGCTCGGCAAGCCGTTCTATTTAATGTTCAAGCGCAAGAACGCTTCGCCGACACCGCATCCCGAACAATGGCGACGTTTCACCAGGGACGGTGACTCGAAACCACACTTCCTCCAGCCCGAAACCGCACGATTTCGCACGACGATGAGCCGATGGCGGAAATCTTCGAGTCCANTCAGGCCATTCACACGATCGAGTACGTGCTCAGGTACCGTGGTCGGACACTGGGGTTGCGTACCGTGGCGTACATGTGGGCTACTGTCCCTTGGGNCCGATGCCCGAAGCTGTCCGAGGGTGCCTNGTGGAACATGGGTGGCTAGN]

[+] EMBL BX468730             [GCAAGATCGNCACGAGGTCGCAAATCATCTTCCTGGTGCTGCTGTTCGCCTACATGGTGTTCATGATGTTCATGAAGTGGATCGCGTATACAGCCAAAACCGACTACCAGCCCCGCACGCCCGGCTGCGCCCCGTTCCGTGCTGATTATGTTCATCAACATGATGCTGTTTAAAAACTCCGAACCCTTCCACGGCTGCGACGAGTTCATGTTCGAGGGCCAGAACGAGCTGCAGCGCACGTTCGTGTTCATTGCGCTGCTCTGCATTCCCTGGATGCTGCTCGGCAAGCCGTTCTATTTAATGTTCAAGCGCAAGAACGCTTCGCCGACACCGCATCCCGAACAATGGCGACGTTTCACCAGGGACGGTGACTCGAAACCACACTTCCTCCAGCCCGAAACCGCACGATTTCGCACGACGATGAGCCGATGGCGGAAATCTTCGAGTCCANTCAGGCCATTCACACGATCGAGTACGTGCTCAGGTACCGTGGTCGGACACTGGGGTTGCGTACCGTGGCGTACATGTGGGCTACTGTCCCTTGGGNCCGATGCCCGAAGCTGTCCGAGGGTGCCTNGTGGAACATGGGTGGCTAGN]


>consensus_3232#1 GCAAGATCGNCACGAGGTCGCAAATCATCTTCCTGGTGCTGCTGTTCGCCTACATGGTGT TCATGATGTTCATGAAGTGGATCGCGTATACAGCCAAAACCGACTACCAGCCCCGCACGC CCGGCTGCGCCCCGTTCCGTGCTGATTATGTTCATCAACATGATGCTGTTTAAAAACTCC GAACCCTTCCACGGCTGCGACGAGTTCATGTTCGAGGGCCAGAACGAGCTGCAGCGCACG TTCGTGTTCATTGCGCTGCTCTGCATTCCCTGGATGCTGCTCGGCAAGCCGTTCTATTTA ATGTTCAAGCGCAAGAACGCTTCGCCGACACCGCATCCCGAACAATGGCGACGTTTCACC AGGGACGGTGACTCGAAACCACACTTCCTCCAGCCCGAAACCGCACGATTTCGCACGACG ATGAGCCGATGGCGGAAATCTTCGAGTCCANTCAGGCCATTCACACGATCGAGTACGTGC TCAGGTACCGTGGTCGGACACTGGGGTTGCGTACCGTGGCGTACATGTGGGCTACTGTCC CTTGGGNCCGATGCCCGAAGCTGTCCGAGGGTGCCTNGTGGAACATGGGTGGCTAGN



consensusID : consensus_3232#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 220
fasta sequence
                              [TCTAGGCGTCANAACAAACGAAAAAAAGCCATCANAGTGCATATGGCAAGTGTGACACAGTGGCAGGCCGTTTGCTCGAGGAAGAATAAAAGACATTGTTTTGTCGTGCCTTNNAAGCTAATCTTGGAAGCGTAACGTTTCATCGACATTATAAGACAATCTCGAAAGTTGAGCTCCAGAGTCAGGTGCGNATGAGCGAATCGGATCTGATCGNTGCAGA]

[+] EMBL BX619611             [TCTAGGCGTCANAACAAACGAAAAAAAGCCATCANAGTGCATATGGCAAGTGTGACACAGTGGCAGGCCGTTTGCTCGAGGAAGAATAAAAGACATTGTTTTGTCGTGCCTTNNAAGCTAATCTTGGAAGCGTAACGTTTCATCGACATTATAAGACAATCTCGAAAGTTGAGCTCCAGAGTCAGGTGCGNATGAGCGAATCGGATCTGATCGNTGCAGA]


>consensus_3232#2 TCTAGGCGTCANAACAAACGAAAAAAAGCCATCANAGTGCATATGGCAAGTGTGACACAG TGGCAGGCCGTTTGCTCGAGGAAGAATAAAAGACATTGTTTTGTCGTGCCTTNNAAGCTA ATCTTGGAAGCGTAACGTTTCATCGACATTATAAGACAATCTCGAAAGTTGAGCTCCAGA GTCAGGTGCGNATGAGCGAATCGGATCTGATCGNTGCAGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3232#0      CCGCAGGTTAAGAGTAAACATACCAAAACAATATGTTTTTATCATTGGTGCTACACACAN 60
consensus_3232#2      ------------------------------------------------------------
consensus_3232#1      ------------------------------------------------------------
                                                                                  

consensus_3232#0      AACTAAACACAATCTTCAACAAGTTTATCTATTGTTGACAAAGTTTGGNGCCGAGCAAAG 120
consensus_3232#2      ------------------------------------------------------------
consensus_3232#1      ------------------------------------------------------------
                                                                                  

consensus_3232#0      CAAAACAAAAAATCTTTCCTTGATAGATCGGAAAGACAGTCTAATAGATATACCTCCTGG 180
consensus_3232#2      ------------------------------------------------------------
consensus_3232#1      ------------------------------------------------------------
                                                                                  

consensus_3232#0      CCTGATGACAGTACCATACCTGGTGCTGGTTTCATAACTTGCTTTGTTATACAAGAGTAA 240
consensus_3232#2      ------------------------------------------------------------
consensus_3232#1      ------------------------------------------------------------
                                                                                  

consensus_3232#0      NTCTGACGCACTTGCCACCTAGGCTAACAATCCAGAAAAGTGTACTGAGGTTTAACANAA 300
consensus_3232#2      ------------------------------------------------------------
consensus_3232#1      ------------------------------------------------------------
                                                                                  

consensus_3232#0      AACTCAGNTTAAATACANCACAGCAANCTTAAGCGCCCTCAAATTACTTTCACTACNAAG 360
consensus_3232#2      ------------------------------------------------------------
consensus_3232#1      ------------------------------------------------------------
                                                                                  

consensus_3232#0      CACTACCGCAGCTAATTAACNACTTGAAGTTTGGGTANTAANTACACTGGGACTTACCGC 420
consensus_3232#2      ------------------------------------------------------------
consensus_3232#1      ------------------------------------------------------------
                                                                                  

consensus_3232#0      ACAACACTAAACGGGGCCGAGGTACCCGCCTCACAATTCATTACTTAAATAAACTNACAC 480
consensus_3232#2      ------------------------------------------------------------
consensus_3232#1      ------------------------------------------------GCAAGATCGNCA 12
                                                                                  

consensus_3232#0      AGAACCGGTGTNATTAGTGCCCAAGAGGAAACANCTCNCACAANGTGGATNGGCACACAA 540
consensus_3232#2      ------------------------------------------------------------
consensus_3232#1      CGAGGTCGCAAATCATCTTCCTGGTGCTGCTGTTCGCCTACATGGTGTTCATGATGTTCA 72
                                                                                  

consensus_3232#0      CAATTCCAGGACAAAAGGNCCCAAACACAGATTTATGGGNCAGGCANNCAAGACAGCCCC 600
consensus_3232#2      ------------------------------------------------------------
consensus_3232#1      TGAAGTGGATCGCGTATACAGCCAAAACCGACT-ACCAGCCCCGCACGCCCGGCTGCGCC 131
                                                                                  

consensus_3232#0      CGCCATACNGGAGAAACGTNCCACAAGCAACGGTANTGACCACACCTCCAAAGCGGGCGA 660
consensus_3232#2      ------------------------------------------------------------
consensus_3232#1      CCGTTCCGTGCTGATTATGTTCATCAACATGATGCTGTTTAAAAACTCCGAACCCTTCCA 191
                                                                                  

consensus_3232#0      AAACNAAGGAANCACCAAGTTAGGGGCTGACGGCACAANGGCGGGCANACNAGCATATAT 720
consensus_3232#2      ------------------------------------------------------------
consensus_3232#1      CGGCTGCGACGAGTTCATGTTCGAGGGCCAGAACGAGCTGCAGCGCACGTTCGTGTTCAT 251
                                                                                  

consensus_3232#0      -ACCCCAGGGGGAACGCGGGACATGTNGGTTGGCGCACCATTCAGAAAAATGGGCATNAC 779
consensus_3232#2      ------------------------------------------------------------
consensus_3232#1      TGCGCTGCTCTGCATTCCCTGGATGCTGCTCGGCAAGCCGTTCTATTTAATGTTCAAGCG 311
                                                                                  

consensus_3232#0      CGGNACACAACANCTAACCTTACCCCGAGTACGGCGCGAACAACGGGTAACCAAGCAACG 839
consensus_3232#2      ------------------------------------------------------------
consensus_3232#1      CAAGAACGCTTCGCCGACACCGCATCCCGAACAATG---GCGACGTTTCACCAGGGACGG 368
                                                                                  

consensus_3232#0      GTTGTATAAACACNAGGGGCTNCCACTAGAGAGACGAACACGNCGGNNGAAAACAAGAGA 899
consensus_3232#2      -----------TCTAGGCGTCANAACAAACGAAAAAAAGCCATCANAGTGCATATGGCAA 49
consensus_3232#1      TGACTCGAAACCACACTTCCTCCAGCCCGAAACCGCACGATTTCGCACGACGATGAGCCG 428
                                    *          *     *    *      *            *   

consensus_3232#0      CCAACACANACCCCGGGG-GCGCANCGGGAACTCACANCNGGGGACNCAACCCCGCCCAA 958
consensus_3232#2      GTGTGACACAGTGGCAGG-CCGTTTGCTCGAGGAAGAATAAAAGACATTGTTTTGTCGTG 108
consensus_3232#1      ATGGCGGAAATCTTCGAGTCCANTCAGGCCATTCACACGATCGAGTAC-GTGCTCAGGTA 487
                             * *       *  *         *   * *                       

consensus_3232#0      CNACCCGGGCCACCTCTCCAAGCGTAAT-TAANATNNGCACACGGGCGACACNNGCC-GG 1016
consensus_3232#2      CCTTNNAAGCTAATCTTGGAAGCGTAACGTTTCATCGACAT-TATAAGACAATCTCG-AA 166
consensus_3232#1      CCGTGGTCGGACACTGGGGTTGCGTACCGTGGCGT--ACATGTGGGCTACTGTCCCTTGG 545
                      *       *            *****   *    *   **        **     *    

consensus_3232#0      GGCCANTACACACCANCAACTGGGAACACNGGCACGGGAAGNNCATAACATANGNCGTNA 1076
consensus_3232#2      AGTTGAGCTCCAGAGTCAGGTGCGNATGAGCGAATCGGATCTGATCGNTGCAGA------ 220
consensus_3232#1      GNCCGATGCCCGAAGCTGTCCGAGGGTGCCTN-GTGGAACATGGGTGGC-TAGN------ 597
                                *          * *            * *            *        

consensus_3232#0      CCCNTAAACNCANAACCCATNGGGGGCCTACACNCGGCCCCACGCCCAGACCCAGCCNCA 1136
consensus_3232#2      ------------------------------------------------------------
consensus_3232#1      ------------------------------------------------------------
                                                                                  

consensus_3232#0      NGGCCGCCAGCCCACCATCAGGNTGCCNCACACAACACCAGCGCCNCNAAGCAACCTCAG 1196
consensus_3232#2      ------------------------------------------------------------
consensus_3232#1      ------------------------------------------------------------
                                                                                  

consensus_3232#0      NAAACNCNGGCNACANCCCACACCGCGGTAGGCGCAANAACGGNACC 1243
consensus_3232#2      -----------------------------------------------
consensus_3232#1      -----------------------------------------------
                                                                     




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)