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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3237#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence
[CCGGGCATAAAGCACATGGCATATGACAAGCTTCTGCAGCGGGTTAGTGAAATTGAGATGACCGATGGACGGAAGATATTGTACCAGTATGATGTGCGCGCAGAGCGGACATTCAAGCAGGTTCGAGCAAAGGATGAAACGGTCTTAAGTGAAAAGTACTACATTCGAGATGCGAATGGATTCGTACTAATGGACATAGACATGGCTTACCTGACGAATGATCATCCGCCGGACGTGCGAGTGACGAGCTACATCTACAAGGATCAACAGCTGATTGGGTTTGTGCGCAACGATAAGCTGTACGGGGTCATCACAGATCATGAAGGATCTGTACGCTTGGTGGTGAGAGAGGGTGAAGTAGTCGCCGCTTATGATTATCTTCCATATGGGCAGATATTCCGACGCTTTGGGACCGATTTGGACGGACAGATCTCGTATCTTTACACGGGTCAGGAGTGGGAACCGGAGACCGGGCTGTACAACTATCGAGCTCGTTTGTATGATCCCGACATTGGGAGGTTCTATCAAATGGATCCAAAAGAACAGTACCCAAGCCCTTACGTTTATGCCGGAAACTCGCCCGTTTCGTTGATCGATCCACATGGAGAGCTTGCATTTGCTATCAGCTGTATTATAATGGCCATAAT]
[+] EMBL BM651700 [CCGGGCATAAAGCACATGGCATATGACAAGCTTCTGCAGCGGGTTAGTGAAATTGAGATGACCGATGGACGGAAGATATTGTACCAGTATGATGTGCGCGCAGAGCGGACATTCAAGCAGGTTCGAGCAAAGGATGAAACGGTCTTAAGTGAAAAGTACTACATTCGAGATGCGAATGGATTCGTACTAATGGACATAGACATGGCTTACCTGACGAATGATCATCCGCCGGACGTGCGAGTGACGAGCTACATCTACAAGGATCAACAGCTGATTGGGTTTGTGCGCAACGATAAGCTGTACGGGGTCATCACAGATCATGAAGGATCTGTACGCTTGGTGGTGAGAGAGGGTGAAGTAGTCGCCGCTTATGATTATCTTCCATATGGGCAGATATTCCGACGCTTTGGGACCGATTTGGACGGACAGATCTCGTATCTTTACACGGGTCAGGAGTGGGAACCGGAGACCGGGCTGTACAACTATCGAGCTCGTTTGTATGATCCCGACATTGGGAGGTTCTATCAAATGGATCCAAAAGAACAGTACCCAAGCCCTTACGTTTATGCCGGAAACTCGCCCGTTTCGTTGATCGATCCACATGGAGAGCTTGCATTTGCTATCAGCTGTATTATAATGGCCATAAT]
consensusID : consensus_3237#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGAGAGGGTGAAGTAGTCGCCGCTTATGATTATCTTCCATATGGGCAGATATTCCGACGCTTTGGGACCGATTTGGACGGACAGATCTCGTATCTTTACACGGGTCAGGAGTGGGAACCGGAGACCGGGCTGTACAACTATCGAGCTCGTTTGTATGATCCCGACATTGGGAGGTTCTATCAAATGGATCCAAAAGAACAGTACCCAAGCCCTTACGTTTATGCCGGAAACTCGCCCGTTTCGTTGATCGATCCAGATGGAGAGCTTGCATTTGCTATCAGCTGTATTATAATGGCCATAATAGGTGCTTACATTGGTGCTTCGGCAGCGGCTC]
[+] EMBL BM584352 [CCGCCCACGCGTCCGCCCACGCGTCCGGAGAGGGTGAAGTAGTCGCCGCTTATGATTATCTTCCATATGGGCAGATATTCCGACGCTTTGGGACCGATTTGGACGGACAGATCTCGTATCTTTACACGGGTCAGGAGTGGGAACCGGAGACCGGGCTGTACAACTATCGAGCTCGTTTGTATGATCCCGACATTGGGAGGTTCTATCAAATGGATCCAAAAGAACAGTACCCAAGCCCTTACGTTTATGCCGGAAACTCGCCCGTTTCGTTGATCGATCCAGATGGAGAGCTTGCATTTGCTATCAGCTGTATTATAATGGCCATAATAGGTGCTTACATTGGTGCTTCGGCAGCGGCTC]
consensusID : consensus_3237#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 122 fasta sequence
[TGCCGAAAGAACAGTACCCAAGCCCTTACGTTTATGCCGGAAACTCGCCCGTTTCGTTGATCGATCCAGATGGAATGAATTTGCCTTCACATTGGCTGTGCTTATTTTGGCGTTAGTCGGAG]
[+] EMBL BM614695 [TGCCGAAAGAACAGTACCCAAGCCCTTACGTTTATGCCGGAAACTCGCCCGTTTCGTTGATCGATCCAGATGGAATGAATTTGCCTTCACATTGGCTGTGCTTATTTTGGCGTTAGTCGGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3237#0 CCGGGCATAAAGCACATGGCATATGACAAGCTTCTGCAGCGGGTTAGTGAAATTGAGATG 60
consensus_3237#1 ------------------------------------------------------------
consensus_3237#2 ------------------------------------------------------------
consensus_3237#0 ACCGATGGACGGAAGATATTGTACCAGTATGATGTGCGCGCAGAGCGGACATTCAAGCAG 120
consensus_3237#1 ------------------------------------------------------------
consensus_3237#2 ------------------------------------------------------------
consensus_3237#0 GTTCGAGCAAAGGATGAAACGGTCTTAAGTGAAAAGTACTACATTCGAGATGCGAATGGA 180
consensus_3237#1 ------------------------------------------------------------
consensus_3237#2 ------------------------------------------------------------
consensus_3237#0 TTCGTACTAATGGACATAGACATGGCTTACCTGACGAATGATCATCCGCCGGACGTGCGA 240
consensus_3237#1 ------------------------------------------------------------
consensus_3237#2 ------------------------------------------------------------
consensus_3237#0 GTGACGAGCTACATCTACAAGGATCAACAGCTGATTGGGTTTGTGCGCAACGATAAGCTG 300
consensus_3237#1 ------------------------------------------------------------
consensus_3237#2 ------------------------------------------------------------
consensus_3237#0 TACGGGGTCATCACAGATCATGAAGGATCTGTACGCTTGGTGGTGAGAGAGGGTGAAGTA 360
consensus_3237#1 -------------CCGCCCACGCG---TCCGCCCAC---GCGTCCGGAGAGGGTGAAGTA 41
consensus_3237#2 ------------------------------------------------------------
consensus_3237#0 GTCGCCGCTTATGATTATCTTCCATATGGGCAGATATTCCGACGCTTTGGGACCGATTTG 420
consensus_3237#1 GTCGCCGCTTATGATTATCTTCCATATGGGCAGATATTCCGACGCTTTGGGACCGATTTG 101
consensus_3237#2 ------------------------------------------------------------
consensus_3237#0 GACGGACAGATCTCGTATCTTTACACGGGTCAGGAGTGGGAACCGGAGACCGGGCTGTAC 480
consensus_3237#1 GACGGACAGATCTCGTATCTTTACACGGGTCAGGAGTGGGAACCGGAGACCGGGCTGTAC 161
consensus_3237#2 ------------------------------------------------------------
consensus_3237#0 AACTATCGAGCTCGTTTGTATGATCCCGACATTGGGAGGTTCTATCAAATGGATCCAAAA 540
consensus_3237#1 AACTATCGAGCTCGTTTGTATGATCCCGACATTGGGAGGTTCTATCAAATGGATCCAAAA 221
consensus_3237#2 ----------------------------------------------------TGCCGAAA 8
** ***
consensus_3237#0 GAACAGTACCCAAGCCCTTACGTTTATGCCGGAAACTCGCCCGTTTCGTTGATCGATCCA 600
consensus_3237#1 GAACAGTACCCAAGCCCTTACGTTTATGCCGGAAACTCGCCCGTTTCGTTGATCGATCCA 281
consensus_3237#2 GAACAGTACCCAAGCCCTTACGTTTATGCCGGAAACTCGCCCGTTTCGTTGATCGATCCA 68
************************************************************
consensus_3237#0 CATGGA--GAGCTTGCATTTGCTATCAGCTGTA-TTATAATGGCCATAAT---------- 647
consensus_3237#1 GATGGA--GAGCTTGCATTTGCTATCAGCTGTA-TTATAATGGCCATAATAGGTGCTTAC 338
consensus_3237#2 GATGGAATGAATTTGCCTTCAC-ATTGGCTGTGCTTATTTTGGCGTTAGTCGGAG----- 122
***** ** **** ** * ** ***** **** **** ** *
consensus_3237#0 ----------------------
consensus_3237#1 ATTGGTGCTTCGGCAGCGGCTC 360
consensus_3237#2 ----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||