These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3241#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 804 fasta sequence [TTACACACCGCAAGTGGAAGCTGATGGTTAAGACCGAAACACAACTTTGAAGCAGATAACTGTACGCGCTTGGAACTTGAGTGATTTTCGCTGATAAATTATTAGCGTTTTACTTGTACGCGCTACACGTGGAGCCGCTTCATGCGCCATCTTTGATGAAGGCGTTGAGTTGTAGAAACAGCGGCGACACACGCGTGGTGCAGTTTGTGATATGAAATGAACTAATGTGCTGTTCTTTTGTTGGTTGAATTTTGCAGAAGCTTGAAATAATCATGGCATCGTCCCATCTGAACTGGTTGATCGTGCGCGATCACAACGCGTTCCTGCTGAAGCGGAGGGACATCCGGAAGCCGTTCAGCACGAACCACCCAACTTCTTTGTAGGAGCCCGGAAACCTGACCAACTTGAGCTCGTTCCGTTACAGTGGGCTGGTCCACCACAAGACCATCACGATTACGCCGGCTGAGAAGAAGGGCGTCAACTTTGTGTACAACCGCAAGAAGGTCTTGAACAAGCCAGCCAAGGCGCCAGTCAAGGTCACGCTCAAGGAGGGACCGCGTCGTACGCTGAAGAAGATTGCCAACATGATGAANGCCAACCGGTACCGTGCGGATCTGCGCGGAGCCGCCCTTCGCCGTGCCAGCGCCATCCTTCGCTCGCAGCGTCCCACCAAGACCCGAAAGGGTAAGGCTGGAGCTGCGCCGGCAGCAGCCACCGCCGCTGCCGCCGGTACCGCCGCGGCTGCCGCTCCCAAGAAGGCCGAGTAAGCGTCTTTTTGAGAGGGGGAAGGAGGTTGATTCTTGC] [+] EMBL BX621016 [TTACACACCGCAAGTGGAAGCTGATGGTTAAGACCGAAACACAACTTTGAAGCAGATAACTGTACGCGCTTGGAACTTGAGTGATTTTCGCTGATAAATTATTAGCGTTTTACTTGTACGCGCTACACGTGGAGCCGCTTCATGCGCCATCTTTGATGAAGGCGTTGAGTTGTAGAAACAGCGGCGACACACGCGTGGTGCAGTTTGTGATATGAAATGAACTAATGTGCTGTTCTTTTGTTGGTTGAATTTTGCAGAAGCTTGAAATAATCATGGCATCGTCCCATCTGAACTGGTTGATCGTGCGCGATCACAACGCGTTCCTGCTGAAGCGGAGGGACATCCGGAAGCCGTTCAGCACGAACCACCCAACTTCTTTGTAGGAGCCCGGAAACCTGACCAACTTGAGCTCGTTCCGTTACAGTGGGCTGGTCCACCACAAGACCATCACGATTACGCCGGCTGAGAAGAAGGGCGTCAACTTTGTGTACAACCGCAAGAAGGTCTTGAACAAGCCAGCCAAGGCGCCAGTCAAGGTCACGCTCAAGGAGGGACCGCGTCGTACGCTGAAGAAGATTGCCAACATGATGAANGCCAACCGGTACCGTGCGGAT ] [+] EMBL BM614877 [ ccgTGTTGGTTGAATTTTGCAGAAGCTTGAAATAATCATGGCATCGTCCCATCTGAACTGGTTGATCGTGCGCGATCACAACGCGTTCCTGCTGAAGCGGAGGGACATCCGGAAGCCGTTCAGCACGAACCACCCAACTTCTTTGTAGGAGCCCGGAAACCTGACCAACTTGAGCTCGTTCCGTTACAGTGGGCTGGTCCACCACAAGACCATCACGATTACGCCGGCTGAGAAGAAGGGCGTCAACTTCGTGTACAACCGCAAGAAGGTCTTGAACAAGCCAGCCAAGGCGCCAGTCAAGGTCACGCTCAAGGAGGGACCGCGTCGTACGCTGAAGAAGATTGCCAACATGATGAAGGCCAACCGGTACCGTGCGGATCTGCGCGGAGCCGCCCTTCGCCGTGCCAGCGCCATCCTTCGCTCGCAGCGTCCCACCAAGACCCGAAAGGGTAAGGCTGGAGCTGCGCCGGCAGCAGCCACCGCCGCTGCCGCCGGTACCGCCGCGGCTGCCGCTCCCAAGAAGGCCGAGTAAGCGTCTTTTTGAGAGGGGGAAGGAGGTTGATTCTTGC] consensusID : consensus_3241#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [CCGCCCACGCGTCCGTACAACGCCAGCTCCAGGTGGTGGGTGAAACAACAGTCCGCTTCCGCAGGATCAGCAATCAACGCACGCGAAAGGAGGTGTGCATCTGTGCGTGTAAAAAGCCCGGCCGCAACGCAACGCAAAAGTTGACACCATCACTTACCCGCTGCAGTTAACAAAACCGTCCGAGCAAGGAGAGCAAGCAAATAGATACAACGAACGAACGTAGCGCCCAGACAGTAAATACGAACGCGGAAGGTTTCTTTTTTTCTCTCTGGCGCGCCGGATTAACGTTCTTTTAACATATATACACACACACACACGTTTGACGTAAAAAAAAACCACAACAAGCAATTAAAAGGCAAACAACGATGCCGGAAAGTGGACCCGTGTACCAGCCGACGACGGTCTCGTTCGAGGCGCGTCCGAGCGCGGGCGGACTGCTGGCCCAAACTACGGCCGTCTCGTCGATGAAGATGCTGCGCAAACCGGCCATCCAGGTGTCGATACTGGTGTTCGGCTTGATCATGTTTGCCACAGGAATCGCACTGGTTGCTAGCGGCTCGGCAGACTACTCCGATGCGGAGCAGCACCCGGAAATCAACCCGGAGGGCAAGGTGCAGGAGGAGCGCATCGACGTCGGGCTGATCGTGACCGGGGCAATCATCACGCTGTTCGGAATCGTTTTTCCTCGGACT] [+] EMBL BM623899 [CCGCCCACGCGTCCGTACAACGCCAGCTCCAGGTGGTGGGTGAAACAACAGTCCGCTTCCGCAGGATCAGCAATCAACGCACGCGAAAGGAGGTGTGCATCTGTGCGTGTAAAAAGCCCGGCCGCAACGCAACGCAAAAGTTGACACCATCACTTACCCGCTGCAGTTAACAAAACCGTCCGAGCAAGGAGAGCAAGCAAATAGATACAACGAACGAACGTAGCGCCCAGACAGTAAATACGAACGCGGAAGGTTTCTTTTTTTCTCTCTGGCGCGCCGGATTAACGTTCTTTTAACATATATACACACACACACACGTTTGACGTAAAAAAAAACCACAACAAGCAATTAAAAGGCAAACAACGATGCCGGAAAGTGGACCCGTGTACCAGCCGACGACGGTCTCGTTCGAGGCGCGTCCGAGCGCGGGCGGACTGCTGGCCCAAACTACGGCCGTCTCGTCGATGAAGATGCTGCGCAAACCGGCCATCCAGGTGTCGATACTGGTGTTCGGCTTGATCATGTTTGCCACAGGAATCGCACTGGTTGCTAGCGGCTCGGCAGACTACTCCGATGCGGAGCAGCACCCGGAAATCAACCCGGAGGGCAAGGTGCAGGAGGAGCGCATCGACGTCGGGCTGATCGTGACCGGGGCAATCATCACGCTGTTCGGAATCGTTTTTCCTCGGACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3241#0 TTACACACCGCAAGTGGAAGCTGATGGTTAAGACCGAAACACAACTTTGAAGCAGATAAC 60 consensus_3241#1 -----------CCGCCCACGCGTCCGTACAACGCCAGCTCCAGGTGGTGGGTGAAACAAC 49 * * ** * ** ** * ** * * *** consensus_3241#0 TGTACGCGCTTGGAACTTGAGTGATTTTCGCTGATAAATTATTAGCGTTTTACTTGTACG 120 consensus_3241#1 AGTCCGCTTCCGCAGGATCAGCAATCAACGCACGCGAA--AGGAGGTGTGCATCTGTGCG 107 ** *** * * * ** ** *** ** * ** * * *** ** consensus_3241#0 CGCTACACGTGGAGCCGCTTCATG-CGCCATCTTTGATGAAGGCGTTGA---GTTGTAGA 176 consensus_3241#1 TGTAAAAAGCCCGGCCGCAACGCAACGCAAAAGTTGACACCATCACTTACCCGCTGCAGT 167 * * * * ***** * *** * **** * * * * ** ** consensus_3241#0 -AACAGCGGCGACACA-CGCGTGGTGCAGTTTGTGATATGAAATGAACTAATGTGCTGTT 234 consensus_3241#1 TAACAAAACCGTCCGAGCAAGGAGAGCAAGCAAATAGATACAACGAACGAACGTAGCGCC 227 **** ** * * * * * *** * ** ** **** ** ** * consensus_3241#0 CTTTTGTTGGTTGAATTTTGCAGAAGCTTGAAATAATCATGGCATCGTCCCATCTGAACT 294 consensus_3241#1 CA---GACAGTAAA------TACGAACGCGGAAGGTTTCTTTTTTTCTCTCTGGCGCGCC 278 * * ** * * * * * ** * * * ** * * * consensus_3241#0 GGTTGATCGTGCGCGATCACAACGCGTTCCTGCTGAAGCGGAGGGACATC-CGGAAGCCG 353 consensus_3241#1 GGATTAACGTTC----TTTTAACATATATACACACACACACACGTTTGACGTAAAAAAAA 334 ** * * *** * * *** * * * * * * * ** consensus_3241#0 TTCAGCACGAACCACCCAACTTCTTTGTAGGAGCCCGGAAACCTGACCAACTTGAGCTCG 413 consensus_3241#1 ACCACAACAAGCAATTAAAAGGCAAACAACGATGCCGGAAAGTGGACC--CGTGTACCAG 392 ** ** * * * ** * * ** ******* **** * ** * * consensus_3241#0 TTCCGTTACAGTGGGCTGGTCCACCACAAGACC-ATCACGATTACGCCGGCTGAGAAGAA 472 consensus_3241#1 --CCG--ACGACGGTCTCGTTCGAGGCGCGTCCGAGCGCGGGCG-GACTGCTGGCCCAAA 447 *** ** ** ** ** * * * ** * * ** * * **** ** consensus_3241#0 GGGCGTCAACTTTGTGTACAACCGCAAGAAGGTCTTGAACAAGCCAGCCAAGGCGCCAGT 532 consensus_3241#1 CTACGGCCGTCTCGTCGAT--------GAAGATGCTGCGCAAACCGGCCATCCAGGTGTC 499 ** * * ** * **** * ** *** ** **** * consensus_3241#0 CAAGGTCACGCTCAAGGAGGGACCGCGTCGTACGCTGAAGAAGATTGCCAACATGATGAA 592 consensus_3241#1 GATACTGGTGTTC--GGCTTGATCATGTT---TGCCACAGGA-ATCGC--ACTGGTTGCT 551 * * * ** ** ** * ** ** ** * ** ** ** * ** consensus_3241#0 NGCCAACCGGTACCGTGCGGATCTGCGCGGAGCCGCCCTTCGCCGTGCCAGCGCCATCCT 652 consensus_3241#1 AGCGGCTCGGCAGACTAC--TCCGATGCGGAGCAGCAC---------CCGGAAATCAACC 600 ** *** * * * * ******* ** * ** * * consensus_3241#0 TCGCTCGCAGCGTCCCACCAAGACCCGAAAGGGTAAGGCTGGAGCTGCGCCGGCAGCAGC 712 consensus_3241#1 CGGAGGGCAAGGTGCAGGAGGAGCGCATCGACGTCGGGCTGA--TCGTGACCGGGGCAAT 658 * *** ** * * * ** ***** * * * * *** consensus_3241#0 CACCGCCGCTGCCGCCGGTACCGCCGCGGCTGCCGCTCCCAAGAAGGCCGAGTAAGCGTC 772 consensus_3241#1 CATCAC-GCTGT--TCGGAATCGTTTTTCCTCGGACT----------------------- 692 ** * * **** *** * ** ** ** consensus_3241#0 TTTTTGAGAGGGGGAAGGAGGTTGATTCTTGC 804 consensus_3241#1 -------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||