These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3244#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 910 fasta sequence [CCGCCTTGTTGTGTGGCAAACTATTACAGTTTTCAGCGGTTTTATCTATAGGAAATTACAAATGTTGCTATAAGTACGATATTCAGTTAAATCCATTTGCCAACAGACAAGATTGTGACACTAACACTTACTTGAAGCGACATACATATCAATCATTGGTGAGTCAGCATCATCGCAAAGATAACACCGTTACGATGAATGTATCACCCCGCCCTGCTTCGGTGCATTTACAGGTTTGGATTCAATATTAGAGTGGCAAATATTACAGTTTCGGACAACAAGTGTGCTTGGTGGTAATATTTCACAATGTGGAAATCAACAGCAGGGCGCGACATTGATACAACCGGAGTGAACCAGGGCGAAGATGACGACTGGGAGACAGATCCCGATTTTGTGAACGATGTTAGCGAACAAGAGCAGCGATGGGGCTCTAAAACAGTCGAAGGGAGCGGCCGGAACGCAGCTGCTATCGATATGCAGCAGCTCCGCGAGGAAACGGAGCGAGCTGATTCGGAAAAGAAACGCAAAGAGGGCCCAAAAGCATCGCACGGGTATGGTGGAAAGTTCGGCGTAGAGAAGGACCGAATGGACAAATCCGCTGTCGGCCACGAACACATCGAGAAAGTGGAGAAACATGCCTCCCAGAAGGATTACGTGTCCGGGTTCGGCGGTAAGTTTGGAGTGCAGAAAGATCGCGTTGATAAGTCAGCCCACGGATGGGACCACGTTGAGAAGGTTGACAAACACGAGTCGCAGAAAGATTACAAGACCGGCTTCGGAGGGAAGTTTGGAGTACAGCAGGACCGTCAAGATAAATCGGCGGTTGGGTGGGATCATATTGAAGCTCCACAGAAGCACGAAAGTCAAATCGATCACAAAGTGGGCTTCGGAGGAAAGTTTGGTGNTCAGA] [+] EMBL BM599275 [CCGCCTTGTTGTGTGGCAAACTATTACAGTTTTCAGCGGTTTTATCTATAGGAAATTACAAATGTTGCTATAAGTACGATATTCAGTTAAATCCATTTGCCAACAGACAAGATTGTGACACTAACACTTACTTGAAGCGACATACATATCAATCATTGGTGAGTCAGCATCATCGCAAAGATAACACCGTTACGATGAATGTATCACCCCGCCCTGCTTCGGTGCATTTACAGGTTTGGATTCAATATTAGAGTGGCAAATATTACAGTTTCGGACAACAAGTGTGCTTGGTGGTAATATTTCACAATGTGGAAATCAACAGCAGGGCGCGACATTGATACAACCGGAGTGAACCAGGGCGAAGATGACGACTGGGAGACAGATCCCGATTTTGTGAACGATGTTAGCGAACAAGAGCAGCGATGGGGCTCTAAAACAGTCGAAGGGAGCGGCCGGAACGCAGCTGCTATCGATATGCAGCAGCTCCGCGAGGAAACGGAGCGAGCTGATTCGGAAAAGAAACGCAAAGAGGGCCCAAAAGCATCGCACGGGTATGGTGGAAAGTTCGGCGTAGAGAAGGACCGAATGGACAAATCCGCTGTC ] [+] EMBL BX623398 [ CCGTTACGATGAATGTATCACCCCGCCCTGCTTCGGTGCATTTACAGGTTTGGATTCAATATTAGAGTGGCAAATATTACAGTTTCGGACAACAAGTGTGCTTGGTGGTAATATTTCACAATGTGGAAATCAACAGCAGGGCGCGACATTGATACTACCGGAGTGAACCAGGGCGAAGATGACGACTGGGAGACAGATCCCGATTTTGTGAACGATGTTAGCGAACAAGAGCAGCGATGGGGCTCTAAAACAGTCGAAGGGAGCGGCCGGAACGCAGCTGCTATCGATATGCAGCAGCTCCGCGAGGAAACGGAGCGAGCTGATTCGGAAAAGAAACGCAAAGAGGGCCCAAAAGCATCGCACGGGTATGGTGGAAAGTTCGGCGTAGAGAAGGACCGAATGGACAAATCCGCTGTCGGCCACGAACACATCGAGAAAGTGGAGAAACATGCCTCCCAGAAGGATTACGTGTCCGGGTTCGGCGGTAAGTTTGGAGTGCAGAAAGATCGCGTTGATAAGTCAGCCCACGGATGGGACCACGTTGAGAAGGTTGACAAACACGAGTCGCAGAAAGATTACAAGACCGGCTTCGGAGGGAAGTTTGGAGTACAGCAGGACCGTCAAGATAAATCGGCGGTTGGGTGGGATCATATTGAAGCTCCACAGAAGCACGAAAGTCAAATCGATCACAAAGTGGGCTTCGGAGGAAAGTTTGGTGNTCAGA] consensusID : consensus_3244#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence [CCGCGGACGCGTGGGTGAACGACAAGAAGCGCACCCTGGGTTCGGCCGAGATGAAGAAGTCGCTCAAGTACGACGATGTGGTCGCCGTGTCCGCCGTCGAGCGGTTCGGCGGCAACTTCTTCGTGCTGCAGAACTACGCCCAGCAGAAGACGCCGAAGGACAAGAAGCAGTACATCTCGATCGTGGCGGCCGTGCTGGCCGACCAGCTGTCCCGCACGGAGACGACGAACGATTGCGTCTGCTATCTGCGCGGTGGGCTGCATCCCGAATCGCTCTGCACCGCCTCCGACATGCAGGTGCTGCCGCCAGCGAAAAAAGCCGGTGGTGCCAAGGGATAAGACCTAGTCCTCGACCAACATTCCGTAGAGGTTATTTATTGCGGTAAGAAAGCGAAACAGTGTGCACTCATCGCACCAACCAACACCAACACAGGGCAGCGAAGGAGTGCAGTCGCAGGCGGACGGTCCATAGAGTCCTAAGGTCCTGCTAGCAGCGGAAGCTGGATACGAAATAGACGTACAACAAGGCAATGTATCTTCTACCAACGCACTGTTTCTATTGTTAAGATCGTATTGTGTCTGATTTAATAAAGTAATGTGACTTTAC] [+] EMBL BM598412 [CCGCGGACGCGTGGGTGAACGACAAGAAGCGCACCCTGGGTTCGGCCGAGATGAAGAAGTCGCTCAAGTACGACGATGTGGTCGCCGTGTCCGCCGTCGAGCGGTTCGGCGGCAACTTCTTCGTGCTGCAGAACTACGCCCAGCAGAAGACGCCGAAGGACAAGAAGCAGTACATCTCGATCGTGGCGGCCGTGCTGGCCGACCAGCTGTCCCGCACGGAGACGACGAACGATTGCGTCTGCTATCTGCGCGGTGGGCTGCATCCCGAATCGCTCTGCACCGCCTCCGACATGCAGGTGCTGCCGCCAGCGAAAAAAGCCGGTGGTGCCAAGGGATAAGACCTAGTCCTCGACCAACATTCCGTAGAGGTTATTTATTGCGGTAAGAAAGCGAAACAGTGTGCACTCATCGCACCAACCAACACCAACACAGGGCAGCGAAGGAGTGCAGTCGCAGGCGGACGGTCCATAGAGTCCTAAGGTCCTGCTAGCAGCGGAAGCTGGATACGAAATAGACGTACAACAAGGCAATGTATCTTCTACCAACGCACTGTTTCTATTGTTAAGATCGTATTGTGTCTGATTTAATAAAGTAATGTGACTTTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3244#0 CCGCCTTGTTGTGTGGCAAACTATTACAGTTTTCAGCGGTTTTATCTATAGGAAATTACA 60 consensus_3244#1 ------------------------------------------------------------ consensus_3244#0 AATGTTGCTATAAGTACGATATTCAGTTAAATCCATTTGCCAACAGACAAGATTGTGACA 120 consensus_3244#1 ------------------------------------------------------------ consensus_3244#0 CTAACACTTACTTGAAGCGACATACATATCAATCATTGGTGAGTCAGCATCATCGCAAAG 180 consensus_3244#1 ----------------------------------------------------CCGCGGAC 8 *** * consensus_3244#0 ATAACACCGTTACGATGAATGTATCACCCCGCCCTGCTTCGGTGCATTTACAGGTTTGGA 240 consensus_3244#1 GCGTGGGTGA-ACGACAAGAAGCGCACCCTG----GGTTCGGCCGAGATGAAGAAGTCGC 63 * **** * ***** * * ***** * * ** * * consensus_3244#0 TTCAATATTAGAGTGGCAAATATTACAGTTTCGGACAACAAGTGTGCTTGGTGGTAATAT 300 consensus_3244#1 TCAAGTACGACGATGTGG----TCGCCGTGTCCGCCGTCGAGCG-GTTCGGCGGCAACTT 118 * * ** * ** * * ** ** * * * ** * * * ** ** ** * consensus_3244#0 -TTCACAATGTGGAAATCAACAGCAGGGCGCGACATTGATACAACCGGAGTGAACCAGGG 359 consensus_3244#1 CTTCGTGCTGCAGAACTACGCC-CAGCAGAAGACGCCGAAGGACAAGAAGCAGTACATCT 177 *** ** *** * * *** *** ** * * ** ** consensus_3244#0 CGAAGATGACGACTGGGAGACAGATCCCGATTTTGTGAACGATGTTAGCGAACAAGAGCA 419 consensus_3244#1 CGATCGTGGCGGCCGTGCTGGCCGACCAGCTGTCCCGCACGGAGACGACGAACGATTGCG 237 *** ** ** * * * ** * * * * *** * ***** * ** consensus_3244#0 GCGATGGGGCTCTAAAACAGTCGAAGGGAGCGGCCGGAACGCAGCTGCTATCGATATGCA 479 consensus_3244#1 TCTGCTAT-CTGCGCGGTGGGCTGCATCCCGAATCGCTCTGCA-CCGCCTCCGACATGCA 295 * ** * * ** *** * ** *** ***** consensus_3244#0 GCAGCT-CCGCGAGGAAACGGAGCGAGCTGATTCGGAAAAGAAACGCAAAGAGGGCCCAA 538 consensus_3244#1 GGTGCTGCCGCCAGCGAAAAAAGCCGGTGGTGCCAAGGGATAAGACCTA-----GTCCTC 350 * *** **** ** ** *** * * * * ** * * * ** consensus_3244#0 AAGCATCGCACGGGTATGGTGGAAAGTTCGGCGTAGAGAAGGACCGAATGGACAAATCCG 598 consensus_3244#1 GACCAACATTCCGTAGAGGTTATTTATTGCGGTAAGAAAGCGAAACAGTGTGCACTCATC 410 * ** * * * *** ** * *** * ** * ** ** consensus_3244#0 CTGTCGGCCACGAACACATCGAGAAAGTGGAGAAACATGCCTCCCAGAAGGATTACGTGT 658 consensus_3244#1 GCACCAACCAACACCAACACAGGGCAGCGAAGGAGTGCAG-TCGCAGGCGGACGGTCCAT 469 * *** * ** * * ** * ** * ** *** *** * consensus_3244#0 CCGGGTTCGGCGGTAAGTTTGGAGTGCAGAAAGATCGCGTTGATAAGTCAGCCCACGGAT 718 consensus_3244#1 AGAGTCCTAAGGTCCTGCTAGCAGCGGAAGCTGGATACG--AAATAGACGTACAACAAGG 527 * * * * * ** * * * ** * ** * * ** consensus_3244#0 GGGACCACGTTGAGAAGGTTGACAAACACGAGTCGCAGAAAGATTACAAGACCGGCTTCG 778 consensus_3244#1 CAATGTATCTTCTACCAACGCACTGTTTCTATTGTTAAGATCGTATTGTGTCTGATTTAA 587 * ** ** * * * * * * * * * ** consensus_3244#0 GAGGGAAGTTTGGAGT-ACAGCAGGACCGTCAAGATAAATCGGCGGTTGGGTGGGATCAT 837 consensus_3244#1 TAAAGTAATGTGACTTTAC----------------------------------------- 606 * * * * ** * ** consensus_3244#0 ATTGAAGCTCCACAGAAGCACGAAAGTCAAATCGATCACAAAGTGGGCTTCGGAGGAAAG 897 consensus_3244#1 ------------------------------------------------------------ consensus_3244#0 TTTGGTGNTCAGA 910 consensus_3244#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||