These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3247#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 908 fasta sequence [GAGAAATTGTGAATTCCCATAGCTTCGCGCATCGAAAAACTGTCGCCTTTGTTTCGAACAAAAAGCTCCGAAGATGCTGTCCCGTTTGGCCTGTGGTAGACCCTTCGTCTCGTCGGCATTGATCAAATCGGCCCTGCAAACAGTTCCAAAGCGCCCGCAGCTCCAGCCAGTGTTCCGCCAGTACGCACGCGATGTGAAGGGAGGCAGCAGCCCGGGCAATGGCTCCACCCGGTCCGAATGCGTACGCGATCGGCAAGGGAGCGGTGGCGGGTGGTGCCGCCCTCGGCCTCGGTGCGCTGTGCTTCTACGGGCTTGGGTTGGGCAGTGGCACGAGCACGCTGGAAAATTCGCACCTGTGGCCCGAGTTCGTGAAGCAGCGCATACAGGACACGTACCTGTACTTTGGCGGTTCGCTCGCAATTTCGGCTGCTAGTGCCGTGGCCGTGTTTCGGTCGCCCCGTCTGCTGAGTCTCGTATCGAGAAATGGTTGGATGTCCGTTCTCGCCACATTCGCGCTCATGATCGGTTCCGGAATGGTGGCACAGTCCATTCCGTACAGTCCCGGCTTGGGCGCGAACAGCTCGCATGGGCGACCCATTCGGCCATCCTGGGTGCCGTGATCGCACCGATGTGCTTCGTTGGAGGGGCCATCCTGACACGCGCCGCCTGGTACACGGCCGGCATCGTCGGAGGCCTCTCCACCGTGGCCGTCTGTGCACCGAGCGACAAGTTCCTGTACATGGGCGGACCGCTAGCGATTGGCTTGGGGGTGGTATTCGCTTCGTCGCTAGCTTCGATGTGGCTTCCGCCGACGACCGCTCTCGGGGCCGGCATTGCCTCACTTTCGCTGTACGGTGGGCTGCTGCTTTTCAGCGGGTTCCTCCTGTACGACACGCAAAAGATTGTGA] [+] EMBL CNS08Q1T [GAGAAATTGTGAATTCCCATAGCTTCGCGCATCGAAAAACTGTCGCCTTTGTTTCGAACAAAAAGCTCCGAAGATGCTGTCCCGTTTGGCCTGTGGTAGACCCTTCGTCTCGTCGGCATTGATCAAATCGGCCCTGCAAACAGTTCCAAAGCGCCCGCAGCTCCAGCCAGTGTTCCGCCAGTACGCACGCGATGTGAAGGGAGGCAGCAGCCCGGGCAATGGCTCCACCCGGTCCGAATGCGTACGCGATCGGCAAGGGAGCGGTGGCGGGTGGTGCCGCCCTCGGCCTCGGTGCGCTGTGCTTCTACGGGCTTGGGTTGGGCAGTGGCACGAGCACGCTGGAAAATTCGCACCTGTGGCCCGAGTTCGTGAAGCAGCGCATACAGGACACGTACCTGTACTTTGGCGGTTCGCTCGCAATTTCGGCTGCTAGTGCCGTGGCCGTGTTTCGGTCGCCCCGTCTGCTGAGTCTCGTATCGAGAAATGGTTGGATGTCCGTTCTCGCCACATTCGCGCTCATGATCGGTTCCGGAATGGTGGCACAGTCCATTCCGTACAGTCCCGGCTTGGGCGCGAACAGCTCGCATGGGCGACCCATTCGGCCATCCTGGGTGCCGTGATCGCACCGATGTGCTTCGTTGGAGGGGCCATCCTGACACGCGCCGCCTGGTACACGGCCGGCATCGTCGGAGGCCTCTCCACCGTGGCCGTCTGTGCACCGAGCGACAAGTTCCTGTACATGGGCGGACCGCTAGCGATTGGCTTGGGGGTGGTATTCGCTTCGTCGCTAGCTTCGATGTGGCTTCCGCCGACGACCGCTCTCGGGGCCGGCATTGCCTCACTTTCGCTGTACGGTGGGCTGCTGCTTTTCAGCGGGTTCCTCCTGTACGACACGCAAAAGATTGTGA] consensusID : consensus_3247#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 249 fasta sequence [CCGGTCAGCCACCTTACTTGGTGGCTGACTTCAGGTAGGCGATCAGATCGCCACGCTCCTGCGGCTTCTTCAGACCGGCGAACACCATCTTCGTGCCGGTGCGGACGTAAATCGTCTTTTGCTGCCGTGAAAAATGAGAGCTAAGTGGCGTAAGAAGCGTATGCGGAGGTTGAAGCGTAAGCGCAGGAAGATGCGTGCGAGATCCAAGTAAACCCCCGGCCGGTACCACCTCTCTACCGAAAGCTGTGC] [+] EMBL BM581081 [CCGGTCAGCCACCTTACTTGGTGGCTGACTTCAGGTAGGCGATCAGATCGCCACGCTCCTGCGGCTTCTTCAGACCGGCGAACACCATCTTCGTGCCGGTGCGGACGTAAATCGTCTTTTGCTGCCGTGAAAAATGAGAGCTAAGTGGCGTAAGAAGCGTATGCGGAGGTTGAAGCGTAAGCGCAGGAAGATGCGTGCGAGATCCAAGTAAACCCCCGGCCGGTACCACCTCTCTACCGAAAGCTGTGC] consensusID : consensus_3247#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 247 fasta sequence [CGTCCGTAAAAATCCAATTCAGCACGTGTATCAAAGTGCCAAACTTCAATCGTGAAAACATGGATGACAACCGACGCCAGGAGCAGACGTACGATTGACCCGCCGGCATGAACCCAGACGGCATCATCGAGTCGAACTATAGACGCGAGTCTTATGACAACTTCGACCAGATGGGTCTGCGTGAAGAGCTCCTCCGCGGCATTTACGCATACGACGTGTTTCGAGAAACCGTCTGCCATCCAGCAGC] [+] EMBL BM614689 [CGTCCGTAAAAATCCAATTCAGCACGTGTATCAAAGTGCCAAACTTCAATCGTGAAAACATGGATGACAACCGACGCCAGGAGCAGACGTACGATTGACCCGCCGGCATGAACCCAGACGGCATCATCGAGTCGAACTATAGACGCGAGTCTTATGACAACTTCGACCAGATGGGTCTGCGTGAAGAGCTCCTCCGCGGCATTTACGCATACGACGTGTTTCGAGAAACCGTCTGCCATCCAGCAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3247#0 GAGAAATTGTGAATTCCCATAGCTTCGCGCATCGAAAAACTGTCGCCTTTGTTTCGAACA 60 consensus_3247#1 ------------------------------------------------------------ consensus_3247#2 ------------------------------------------------------------ consensus_3247#0 AAAAGCTCCGAAGATGCTGTCCCGTTTGGCCTGTGGTAGACCCTTCGTCTCGTCGGCATT 120 consensus_3247#1 ------------------------------------------------------------ consensus_3247#2 ------------------------------------------------------------ consensus_3247#0 GATCAAATCGGCCCTGCAAACAGTTCCAAAGCGCCCGCAGCTCCAGCCAGTGTTCCGCCA 180 consensus_3247#1 ------------------------------------------------------------ consensus_3247#2 ------------------------------------------------------------ consensus_3247#0 GTACGCACGCGATGTGAAGGGAGGCAGCAGCCCGGGCAATGGCTCCACCCGGTCCGAATG 240 consensus_3247#1 ------------------------------------------------------------ consensus_3247#2 ------------------------------------------------------------ consensus_3247#0 CGTACGCGATCGGCAAGGGAGCGGTGGCGGGTGGTGCCGCCCTCGGCCTCGGTGCGCTGT 300 consensus_3247#1 ------------------------------------------------CCGGTCAGCCAC 12 consensus_3247#2 ------------------------------------------------------------ consensus_3247#0 GCTTCTACGGGCTTGGGTTGGGCAGTGGCACGAGCACGCTGGAAAATTCGCACCTGTGGC 360 consensus_3247#1 CTTACTTGGTGGCTGACTT---CAGGTAGGCGATCAGATCGCCA----CGCTCCTGCGGC 65 consensus_3247#2 CGTCCGTAAAAATCCAATT---CAGCACGTGTATCAAAGTGCCAA----ACTTCAATCGT 53 * * ** *** * ** * * * * * consensus_3247#0 CCGAGTTCGTGAAGCAGCGCATACAGGACACGTACCTGTACTTTGGCGGTTCGCTCGCAA 420 consensus_3247#1 T----TCTTCAGACCGGCGAACACCATCTTCGTGCCGGTGCGGACGTAAATCGTCTTTTG 121 consensus_3247#2 GAAAACATGGATGACAACCGACGCCAGGAGCAGAC--GTACGATTGACCCGCCGGCATGA 111 * * * * * * ** * * * consensus_3247#0 TTTCGGCTGCTAGTGCCGTGGCCGTGTTTCGGT-CGCCCCGTCTGCTGAGTCTCGTATCG 479 consensus_3247#1 CTGCCGTGAAAAATG--AGAGCTAAGTGGCGTA-AGAAGCGTATGCGGAGGTTGAAGCGT 178 consensus_3247#2 ACCCAGACGGCATCATCGAGTCGAACTATAGACGCGAGTCTTATGACAACTTCGACCAGA 171 * * * * * * * * * ** * consensus_3247#0 AGAAATGGTTGGATGTCCGTTCTCGCCACATTCGCGCTCATGATCGGTTCCGGAATGGTG 539 consensus_3247#1 AAGCGCAGGAAGATG--CGTGCGAGATCCAAGTAAACCCCCGGCCGGTACCACCTCTCTA 236 consensus_3247#2 TGGGTCTGCGTGAAGAGCTCCTCCGCGGCATTTACGCATACGACGTGTTTCGAGAAACCG 231 * ** * * * ** * * ** * consensus_3247#0 GCACAGTCCATTCCGTACAGTCCCGGCTTGGGCGCGAACAGCTCGCATGGGCGACCCATT 599 consensus_3247#1 CCGAAAGCTGTGC----------------------------------------------- 249 consensus_3247#2 TCTGCCATCCAGCAGC-------------------------------------------- 247 * * consensus_3247#0 CGGCCATCCTGGGTGCCGTGATCGCACCGATGTGCTTCGTTGGAGGGGCCATCCTGACAC 659 consensus_3247#1 ------------------------------------------------------------ consensus_3247#2 ------------------------------------------------------------ consensus_3247#0 GCGCCGCCTGGTACACGGCCGGCATCGTCGGAGGCCTCTCCACCGTGGCCGTCTGTGCAC 719 consensus_3247#1 ------------------------------------------------------------ consensus_3247#2 ------------------------------------------------------------ consensus_3247#0 CGAGCGACAAGTTCCTGTACATGGGCGGACCGCTAGCGATTGGCTTGGGGGTGGTATTCG 779 consensus_3247#1 ------------------------------------------------------------ consensus_3247#2 ------------------------------------------------------------ consensus_3247#0 CTTCGTCGCTAGCTTCGATGTGGCTTCCGCCGACGACCGCTCTCGGGGCCGGCATTGCCT 839 consensus_3247#1 ------------------------------------------------------------ consensus_3247#2 ------------------------------------------------------------ consensus_3247#0 CACTTTCGCTGTACGGTGGGCTGCTGCTTTTCAGCGGGTTCCTCCTGTACGACACGCAAA 899 consensus_3247#1 ------------------------------------------------------------ consensus_3247#2 ------------------------------------------------------------ consensus_3247#0 AGATTGTGA 908 consensus_3247#1 --------- consensus_3247#2 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||