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Anopheles gambiae
cluster # 3248 cluster # 3248       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3248#0 length = 1066 sequences # 2  
consensus_3248#1 length = 555 sequences # 1  

consensusID : consensus_3248#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1066
fasta sequence
                              [ACTGGCATTTCGCCCGCATACGCTAATCTGTCAATAGCGACCGCTTTGTTCTTAAATTTCTTTACGAAGTCCCTATTATCACATCAAGATGGGTAGGGAGGACAAAGCAACCTGGAAGTCCAACTATTTCCTAAAAGCTCGTGCAACTGCTCGACGAATACCCGAGATGTTTCATCGTCGGCGCTGACAATGTCGGCTCCCGTCAGATGCAAACCATCCGTATGTCGCTCCGCGGTTCGGCCATCGTGCTGATGGGCAAGAACACCATGATGCGCAAGGCCATTCGCGGGCATCTGGAGAACAACCAGAACCTGGAGAAGCTGCTCAACCACATCAAGGGCAACGTGGGCTTCGTGTTCACCAAGGGCGATCTGGCCGAGATCCGCGACAAGCTGACCGAGAGCAAGGTGCGTGCCCCGGCCCGTGCCGGTGCGATCGCTCCGCTCGAGGTCGTCATCCCGGCCCAGAACACCGGTCTCGGTCCGGAGAAGACCTCCTTCTTCCAGGCCCTGTCGATCCCGACCAAGATTTCCAAGGGTACGATTGAAATCATCAACGACGTGCCCATCCTGAAGCCGGGCGACAAGGTCGGCGCTTCCGAGGCCACGCTGCTCAACATGCTGAACATCTCGCCGTTCTCGTACGGTCTGCAGATCCAGCAGGTGTACGATTCGGGCTCGATCTTCTCGCCGGAAATCCTCGACATCAAGGCGGAGGATCTGCGCGCCAAGTTCCAGGCTGGAGTCGCCAACCTGGCTGCCGTGTCGCTCCAGATCGGATACCCGACGCTGGCTTCGGTGCCGCACAGCATTGCCAACGGTTTCCGCAACCTGCTGGCCATTGCCGCCGTCACCGAGGTTGAGTTCAAGGAGGCCGAAACGGTCAAGGAGTTCATCAAGGATCCGAGCAAGTTCGCCGCTGCCACGGCAACGACGGCCCAATGGCGACACGCTGGCCATTCTTCTTGTTACGTACCAAAATACGTATTTTTCTGTGAAACCAACTAAAGAGCAAAGCACATTAAAAGTTACACAAAAGCCGGTGAGTCAGAATCGCAAGAGAAACA]

[+] EMBL CNS08PN0             [ACTGGCATTTCGCCCGCATACGCTAATCTGTCAATAGCGACCGCTTTGTTCTTAAATTTCTTTACGAAGTCCCTATTATCACATCAAGATGGGTAGGGAGGACAAAGCAACCTGGAAGTCCAACTATTTCCTAAAAGCTCGTGCAACTGCTCGACGAATACCCGAGATGTTTCATCGTCGGCGCTGACAATGTCGGCTCCCGTCAGATGCAAACCATCCGTATGTCGCTCCGCGGTTCGGCCATCGTGCTGATGGGCAAGAACACCATGATGCGCAAGGCCATTCGCGGGCATCTGGAGAACAACCAGAACCTGGAGAAGCTGCTCAACCACATCAAGGGCAACGTGGGCTTCGTGTTCACCAAGGGCGATCTGGCCGAGATCCGCGACAAGCTGACCGAGAGCAAGGTGCGTGCCCCGGCCCGTGCCGGTGCGATCGCTCCGCTCGAGGTCGTCATCCCGGCCCAGAACACCGGTCTCGGTCCGGAGAAGACCTCCTTCTTCCAGGCCCTGTCGATCCCGACCAAGATTTCCAAGGGTACGATTGAAATCATCAACGACGTGCCCATCCTGAAGCCGGGCGACAAGGTCGGCGCTTCCGAGGCCACGCTGCTCAACATGCTGAACATCTCGCCGTTCTCGTACGGTCTGCAGATCCAGCAGGTGTACGATTCGGGCTCGATCTTCTCGCCGGAAATCCTCGACATCAAGGCGGAGGATCTGCGCGCCAAGTTCCAGGCTGGAGTCGCCAACCTGGCTGCCGTGTCGCTCCAGATCGGATACCCGACGCTGGCTTCGGTGCCGCACAGCATTGCCAACGGTTTCCGCAACCTGCTGGCCATTGCCGCCGTCACCGAGGTTGAGTTCAAGGAGGCCGAAACGGTCAAGGAGTTCATCAAGGATCCGAGCAAGTTCGCCGCTGCCACGGCAACGACGGCCCAATGGCGACACGCTGGCCATTCTTCTTGTTACGTACCAAAATACGTATTTTTCTGTGAAACCAACTAAAGAGCAAAGCACAT                                             ]
[-] EMBL CNS08PN1             [                                                                                                                      TCCAACTATTTCCTAAAAG TCGTGCAACTGCTCGACGAATACCCGAGATGTTTCATCGTCGGCGCTGACAATGTCGGCTCCCGTAAGATGCAAACCATCCGTTTGT TCTCCGCGGTTCGGCCATCGTGCTGATGGGCAAGAACACCTTGATGCGCAAGGCCATTCGCGGGCTTCTGGAGAACAACCAGAACCTGGAGAAGCTGCTCAACCACATCAAGGGCAACGTGGGCTTCGTGTTCACCAAGGGCGTTCTGGCCGAGATCCGCGACAAGCTGACCGAGAGCAAGGTGCGTGCCCCGGCCCGTGCCGGTGCGAATGCTCCGCTCGAGGTCGTCATCCCGGCCCAGAACACCGGTCTCGGTCCGGAGAAGACCTCCTTCTTCCAGGCCCTGTCGATCCCGACCAAGATTTCCAAGGGTACGATTGAAATCATCAACGACGTGCCCATCCTGAAGCCGGGCGACAAGGTCGGCGCTTCCGAGGCCACGCTGCTCAACATGCTGAACATCTCGCCGTTCTCGTACGGTCTGCAGATCCAGCAGGTGTACGATTCGGGCTCGATCTTCTCGCCGGAAATCCTCGACATCAAGGCGGAGGATCTGCGCGCCAAGTTCCAGGCTGGAGTCGCCAACCTGGCTGCCGTGTCGCTCCAGATCGGATACCCGACGCTGGCTTCGGTGCCGAACAGCATTGCCAACGGTTTCCGCAACCTGCTGGCCATTGCCGCCGTCACCGAGGTTGAGTTCAAGGAGGCCGAAACGGTCAAGGAGTTCATCAAGGATCCGAGCAAGTTCGCCGCTGCCACGGCAACGACGGCCCAATGGCGACACGCTGGCCATTCTTCTTGTTACGTACCAAAATACGTATTTTTCTGTGAAACCAACTAAAGAGCAAAGCACATTAAAAGTTACACAAAAGCCGGTGAGTCAGAATCGCAAGAGAAACA]


>consensus_3248#0 ACTGGCATTTCGCCCGCATACGCTAATCTGTCAATAGCGACCGCTTTGTTCTTAAATTTC TTTACGAAGTCCCTATTATCACATCAAGATGGGTAGGGAGGACAAAGCAACCTGGAAGTC CAACTATTTCCTAAAAGCTCGTGCAACTGCTCGACGAATACCCGAGATGTTTCATCGTCG GCGCTGACAATGTCGGCTCCCGTCAGATGCAAACCATCCGTATGTCGCTCCGCGGTTCGG CCATCGTGCTGATGGGCAAGAACACCATGATGCGCAAGGCCATTCGCGGGCATCTGGAGA ACAACCAGAACCTGGAGAAGCTGCTCAACCACATCAAGGGCAACGTGGGCTTCGTGTTCA CCAAGGGCGATCTGGCCGAGATCCGCGACAAGCTGACCGAGAGCAAGGTGCGTGCCCCGG CCCGTGCCGGTGCGATCGCTCCGCTCGAGGTCGTCATCCCGGCCCAGAACACCGGTCTCG GTCCGGAGAAGACCTCCTTCTTCCAGGCCCTGTCGATCCCGACCAAGATTTCCAAGGGTA CGATTGAAATCATCAACGACGTGCCCATCCTGAAGCCGGGCGACAAGGTCGGCGCTTCCG AGGCCACGCTGCTCAACATGCTGAACATCTCGCCGTTCTCGTACGGTCTGCAGATCCAGC AGGTGTACGATTCGGGCTCGATCTTCTCGCCGGAAATCCTCGACATCAAGGCGGAGGATC TGCGCGCCAAGTTCCAGGCTGGAGTCGCCAACCTGGCTGCCGTGTCGCTCCAGATCGGAT ACCCGACGCTGGCTTCGGTGCCGCACAGCATTGCCAACGGTTTCCGCAACCTGCTGGCCA TTGCCGCCGTCACCGAGGTTGAGTTCAAGGAGGCCGAAACGGTCAAGGAGTTCATCAAGG ATCCGAGCAAGTTCGCCGCTGCCACGGCAACGACGGCCCAATGGCGACACGCTGGCCATT CTTCTTGTTACGTACCAAAATACGTATTTTTCTGTGAAACCAACTAAAGAGCAAAGCACA TTAAAAGTTACACAAAAGCCGGTGAGTCAGAATCGCAAGAGAAACA



consensusID : consensus_3248#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 555
fasta sequence
                              [GCAGAATCGCGCACGAGGGCAAAATTGGTTCCCCGTTCGGTGTCTCTTGTTGTACAAATCTTTGGGCCAATATCCCCGTCTTTTCCTCGTTATCTGTGTTTAGTTTTCTTTTCTTTCTACACTTTGCTGTTGTTAGCTAGTGGATAAGCGTTTTATTTCGATTGTTGTTGCATTAAATGTACGCTCGATTTTTGTGTCTACTGTAGGCNGTGGTACGATAACTTTGGATAAAAAAAAACAAACAAACAAAACAAAGCTATCTACAGTGAAAAATAGAAGCGACGTAAGAGATAACACACACGTCAACACAATGCTCCGTATCTTCCGCAATGCCATACGTGGACAAACGCATCACCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGCCAAGCGCTACNGTCAGTAAAAGGATCNACTACGGAGTTCGACCAGGACAGGTGATAAAACAAGCGAACAAACCCGGGTGATCGGTCAANTTCCACGCCGAAAATGGGGTGGTGACCCGGTGGCCNAACACTACTTTACCCCGGAAAGAATGACGGAAACTGCTGGAA]

[+] EMBL BX468831             [GCAGAATCGCGCACGAGGGCAAAATTGGTTCCCCGTTCGGTGTCTCTTGTTGTACAAATCTTTGGGCCAATATCCCCGTCTTTTCCTCGTTATCTGTGTTTAGTTTTCTTTTCTTTCTACACTTTGCTGTTGTTAGCTAGTGGATAAGCGTTTTATTTCGATTGTTGTTGCATTAAATGTACGCTCGATTTTTGTGTCTACTGTAGGCNGTGGTACGATAACTTTGGATAAAAAAAAACAAACAAACAAAACAAAGCTATCTACAGTGAAAAATAGAAGCGACGTAAGAGATAACACACACGTCAACACAATGCTCCGTATCTTCCGCAATGCCATACGTGGACAAACGCATCACCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGCCAAGCGCTACNGTCAGTAAAAGGATCNACTACGGAGTTCGACCAGGACAGGTGATAAAACAAGCGAACAAACCCGGGTGATCGGTCAANTTCCACGCCGAAAATGGGGTGGTGACCCGGTGGCCNAACACTACTTTACCCCGGAAAGAATGACGGAAACTGCTGGAA]


>consensus_3248#1 GCAGAATCGCGCACGAGGGCAAAATTGGTTCCCCGTTCGGTGTCTCTTGTTGTACAAATC TTTGGGCCAATATCCCCGTCTTTTCCTCGTTATCTGTGTTTAGTTTTCTTTTCTTTCTAC ACTTTGCTGTTGTTAGCTAGTGGATAAGCGTTTTATTTCGATTGTTGTTGCATTAAATGT ACGCTCGATTTTTGTGTCTACTGTAGGCNGTGGTACGATAACTTTGGATAAAAAAAAACA AACAAACAAAACAAAGCTATCTACAGTGAAAAATAGAAGCGACGTAAGAGATAACACACA CGTCAACACAATGCTCCGTATCTTCCGCAATGCCATACGTGGACAAACGCATCACCCGCA AGACGTTCTCCTTCTCAGCCATTGCGGCCAAGCGCTACNGTCAGTAAAAGGATCNACTAC GGAGTTCGACCAGGACAGGTGATAAAACAAGCGAACAAACCCGGGTGATCGGTCAANTTC CACGCCGAAAATGGGGTGGTGACCCGGTGGCCNAACACTACTTTACCCCGGAAAGAATGA CGGAAACTGCTGGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3248#0      ACTGGCATTTCGCCCGCATACGCTAATCTGTCAATAGCGACCGCTTTGTTCTTAAATTTC 60
consensus_3248#1      ------------------------------------------------------------
                                                                                  

consensus_3248#0      TTTACGAAGTCCCTATTATCACATCAAGATGGGTAGGGAGGACAAAGCAACCTGGAAGTC 120
consensus_3248#1      -----------------------GCAGAATCGCGCACGAGGGCAAAATTGGTTCCCCGTT 37
                                              **  ** *     **** ****      *    ** 

consensus_3248#0      CAACTATTTCCTAAAAGCTCGTGCAACTGCTCGA-CGAATACCCGAGATGTTTCATCGTC 179
consensus_3248#1      CGG-TGTCTCTTG-----TTGTACAAATCTTTGGGCCAATATCCCCGTCTTTTCCTCGTT 91
                      *   * * ** *      * ** *** *  * *  * **** **  *   **** **** 

consensus_3248#0      GGCGCTGACAATGTCGGCTCCCGTCAGATGCAA----ACCATCCGTATGTCGCTCCGCGG 235
consensus_3248#1      ATCTGTGTTTAGTTTTCTTTTCTTTCTACACTTTGCTGTTGTTAGCTAGTGGATAAGCGT 151
                        *  **   *  *    *  * *   *  *          *  *   ** * *  *** 

consensus_3248#0      TTCGGCCATCGTGCTGATGGGCAAGA-ACAC-CATGATGCGCAAGGCCATTCGCGGGCAT 293
consensus_3248#1      TTTATTTCGATTGTTGTTGCATTAAATGTACGCTCGATTTTTGTGTCTACT-GTAGGCNG 210
                      **         ** ** **    * *   ** *  ***      * * * * *  ***  

consensus_3248#0      CTGGAGAACAACCAGAACCTGGAGAAGCTGCTCAACCACATCAAGGGCAACGTGGGCTTC 353
consensus_3248#1      TGGTACGATAACTTTGGATAAAAAAAAACAAACAAACAAAACAAAGCTATC-----TACA 265
                        * *  * ***          * **      *** ** * *** *  * *         

consensus_3248#0      GTGTTCACCAAGGGCGATCTGGCCGAGATCCGCGACAAGCTGACCGAGAGCAAGGTGCGT 413
consensus_3248#1      GTGAAAAATAGAAGCGACGTAA--GAGATAACACACACGTCAACACAATGCTCCGTATCT 323
                      ***   *  *   ****  *    *****     *** *   **  *  **   **   *

consensus_3248#0      GCCCCGGC-CCGTGCCGGTGCGATCGCTCCGCTCG-AGGTCGTCATCCCGGCCCAGAACA 471
consensus_3248#1      TCCGCAATGCCATACGTGGACAAACGCATCACCCGCAAGACGTTCTCCTT-CTCAG---- 378
                       ** *    ** * *  *  * * ***  * * ** * * ***  ***   * ***    

consensus_3248#0      CCGGTCTCGGTCCGGAGAAGACCTCCTTCTTCCAGGCCCTGTCGATCCCGACCA-AGATT 530
consensus_3248#1      -CCATTGCGGCCAAGCG--------CTACNGTCAG----TAAAAGGATCNACTACGGAGT 425
                       *  *  *** *  * *        ** *   ***    *        * ** *  ** *

consensus_3248#0      TCCAAGGGTACGATTGAAATCATCAACGACGTGCCCATCCTGAAGCCGGGCGACAAGGTC 590
consensus_3248#1      TCGACCAGGACAGGTGATAAAACAAGCGA---ACAAACCCGGGTGATCGGT--CAANTTC 480
                      ** *   * **   *** *  *  * ***    *  * ** *  *   **   ***  **

consensus_3248#0      GGCGCTTCCGAGGCCACGCTGCTCAACATGCTGAACATCTCGCCGTTCTCGTACGGTCTG 650
consensus_3248#1      CACGCCGAAAATGGGGTGGTGACCCGGTGGCCNAACACTACTTTACCCCGGAAAGAATGA 540
                        ***     * *    * **  *     **  ****   *      *  * * *     

consensus_3248#0      CAGATCCAGCAGGTGTACGATTCGGGCTCGATCTTCTCGCCGGAAATCCTCGACATCAAG 710
consensus_3248#1      CGGAAACTGCTGGAA--------------------------------------------- 555
                      * **  * ** **                                               

consensus_3248#0      GCGGAGGATCTGCGCGCCAAGTTCCAGGCTGGAGTCGCCAACCTGGCTGCCGTGTCGCTC 770
consensus_3248#1      ------------------------------------------------------------
                                                                                  

consensus_3248#0      CAGATCGGATACCCGACGCTGGCTTCGGTGCCGCACAGCATTGCCAACGGTTTCCGCAAC 830
consensus_3248#1      ------------------------------------------------------------
                                                                                  

consensus_3248#0      CTGCTGGCCATTGCCGCCGTCACCGAGGTTGAGTTCAAGGAGGCCGAAACGGTCAAGGAG 890
consensus_3248#1      ------------------------------------------------------------
                                                                                  

consensus_3248#0      TTCATCAAGGATCCGAGCAAGTTCGCCGCTGCCACGGCAACGACGGCCCAATGGCGACAC 950
consensus_3248#1      ------------------------------------------------------------
                                                                                  

consensus_3248#0      GCTGGCCATTCTTCTTGTTACGTACCAAAATACGTATTTTTCTGTGAAACCAACTAAAGA 1010
consensus_3248#1      ------------------------------------------------------------
                                                                                  

consensus_3248#0      GCAAAGCACATTAAAAGTTACACAAAAGCCGGTGAGTCAGAATCGCAAGAGAAACA 1066
consensus_3248#1      --------------------------------------------------------
                                                                              




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)