These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3248#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1066 fasta sequence [ACTGGCATTTCGCCCGCATACGCTAATCTGTCAATAGCGACCGCTTTGTTCTTAAATTTCTTTACGAAGTCCCTATTATCACATCAAGATGGGTAGGGAGGACAAAGCAACCTGGAAGTCCAACTATTTCCTAAAAGCTCGTGCAACTGCTCGACGAATACCCGAGATGTTTCATCGTCGGCGCTGACAATGTCGGCTCCCGTCAGATGCAAACCATCCGTATGTCGCTCCGCGGTTCGGCCATCGTGCTGATGGGCAAGAACACCATGATGCGCAAGGCCATTCGCGGGCATCTGGAGAACAACCAGAACCTGGAGAAGCTGCTCAACCACATCAAGGGCAACGTGGGCTTCGTGTTCACCAAGGGCGATCTGGCCGAGATCCGCGACAAGCTGACCGAGAGCAAGGTGCGTGCCCCGGCCCGTGCCGGTGCGATCGCTCCGCTCGAGGTCGTCATCCCGGCCCAGAACACCGGTCTCGGTCCGGAGAAGACCTCCTTCTTCCAGGCCCTGTCGATCCCGACCAAGATTTCCAAGGGTACGATTGAAATCATCAACGACGTGCCCATCCTGAAGCCGGGCGACAAGGTCGGCGCTTCCGAGGCCACGCTGCTCAACATGCTGAACATCTCGCCGTTCTCGTACGGTCTGCAGATCCAGCAGGTGTACGATTCGGGCTCGATCTTCTCGCCGGAAATCCTCGACATCAAGGCGGAGGATCTGCGCGCCAAGTTCCAGGCTGGAGTCGCCAACCTGGCTGCCGTGTCGCTCCAGATCGGATACCCGACGCTGGCTTCGGTGCCGCACAGCATTGCCAACGGTTTCCGCAACCTGCTGGCCATTGCCGCCGTCACCGAGGTTGAGTTCAAGGAGGCCGAAACGGTCAAGGAGTTCATCAAGGATCCGAGCAAGTTCGCCGCTGCCACGGCAACGACGGCCCAATGGCGACACGCTGGCCATTCTTCTTGTTACGTACCAAAATACGTATTTTTCTGTGAAACCAACTAAAGAGCAAAGCACATTAAAAGTTACACAAAAGCCGGTGAGTCAGAATCGCAAGAGAAACA] [+] EMBL CNS08PN0 [ACTGGCATTTCGCCCGCATACGCTAATCTGTCAATAGCGACCGCTTTGTTCTTAAATTTCTTTACGAAGTCCCTATTATCACATCAAGATGGGTAGGGAGGACAAAGCAACCTGGAAGTCCAACTATTTCCTAAAAGCTCGTGCAACTGCTCGACGAATACCCGAGATGTTTCATCGTCGGCGCTGACAATGTCGGCTCCCGTCAGATGCAAACCATCCGTATGTCGCTCCGCGGTTCGGCCATCGTGCTGATGGGCAAGAACACCATGATGCGCAAGGCCATTCGCGGGCATCTGGAGAACAACCAGAACCTGGAGAAGCTGCTCAACCACATCAAGGGCAACGTGGGCTTCGTGTTCACCAAGGGCGATCTGGCCGAGATCCGCGACAAGCTGACCGAGAGCAAGGTGCGTGCCCCGGCCCGTGCCGGTGCGATCGCTCCGCTCGAGGTCGTCATCCCGGCCCAGAACACCGGTCTCGGTCCGGAGAAGACCTCCTTCTTCCAGGCCCTGTCGATCCCGACCAAGATTTCCAAGGGTACGATTGAAATCATCAACGACGTGCCCATCCTGAAGCCGGGCGACAAGGTCGGCGCTTCCGAGGCCACGCTGCTCAACATGCTGAACATCTCGCCGTTCTCGTACGGTCTGCAGATCCAGCAGGTGTACGATTCGGGCTCGATCTTCTCGCCGGAAATCCTCGACATCAAGGCGGAGGATCTGCGCGCCAAGTTCCAGGCTGGAGTCGCCAACCTGGCTGCCGTGTCGCTCCAGATCGGATACCCGACGCTGGCTTCGGTGCCGCACAGCATTGCCAACGGTTTCCGCAACCTGCTGGCCATTGCCGCCGTCACCGAGGTTGAGTTCAAGGAGGCCGAAACGGTCAAGGAGTTCATCAAGGATCCGAGCAAGTTCGCCGCTGCCACGGCAACGACGGCCCAATGGCGACACGCTGGCCATTCTTCTTGTTACGTACCAAAATACGTATTTTTCTGTGAAACCAACTAAAGAGCAAAGCACAT ] [-] EMBL CNS08PN1 [ TCCAACTATTTCCTAAAAG TCGTGCAACTGCTCGACGAATACCCGAGATGTTTCATCGTCGGCGCTGACAATGTCGGCTCCCGTAAGATGCAAACCATCCGTTTGT TCTCCGCGGTTCGGCCATCGTGCTGATGGGCAAGAACACCTTGATGCGCAAGGCCATTCGCGGGCTTCTGGAGAACAACCAGAACCTGGAGAAGCTGCTCAACCACATCAAGGGCAACGTGGGCTTCGTGTTCACCAAGGGCGTTCTGGCCGAGATCCGCGACAAGCTGACCGAGAGCAAGGTGCGTGCCCCGGCCCGTGCCGGTGCGAATGCTCCGCTCGAGGTCGTCATCCCGGCCCAGAACACCGGTCTCGGTCCGGAGAAGACCTCCTTCTTCCAGGCCCTGTCGATCCCGACCAAGATTTCCAAGGGTACGATTGAAATCATCAACGACGTGCCCATCCTGAAGCCGGGCGACAAGGTCGGCGCTTCCGAGGCCACGCTGCTCAACATGCTGAACATCTCGCCGTTCTCGTACGGTCTGCAGATCCAGCAGGTGTACGATTCGGGCTCGATCTTCTCGCCGGAAATCCTCGACATCAAGGCGGAGGATCTGCGCGCCAAGTTCCAGGCTGGAGTCGCCAACCTGGCTGCCGTGTCGCTCCAGATCGGATACCCGACGCTGGCTTCGGTGCCGAACAGCATTGCCAACGGTTTCCGCAACCTGCTGGCCATTGCCGCCGTCACCGAGGTTGAGTTCAAGGAGGCCGAAACGGTCAAGGAGTTCATCAAGGATCCGAGCAAGTTCGCCGCTGCCACGGCAACGACGGCCCAATGGCGACACGCTGGCCATTCTTCTTGTTACGTACCAAAATACGTATTTTTCTGTGAAACCAACTAAAGAGCAAAGCACATTAAAAGTTACACAAAAGCCGGTGAGTCAGAATCGCAAGAGAAACA] consensusID : consensus_3248#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence [GCAGAATCGCGCACGAGGGCAAAATTGGTTCCCCGTTCGGTGTCTCTTGTTGTACAAATCTTTGGGCCAATATCCCCGTCTTTTCCTCGTTATCTGTGTTTAGTTTTCTTTTCTTTCTACACTTTGCTGTTGTTAGCTAGTGGATAAGCGTTTTATTTCGATTGTTGTTGCATTAAATGTACGCTCGATTTTTGTGTCTACTGTAGGCNGTGGTACGATAACTTTGGATAAAAAAAAACAAACAAACAAAACAAAGCTATCTACAGTGAAAAATAGAAGCGACGTAAGAGATAACACACACGTCAACACAATGCTCCGTATCTTCCGCAATGCCATACGTGGACAAACGCATCACCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGCCAAGCGCTACNGTCAGTAAAAGGATCNACTACGGAGTTCGACCAGGACAGGTGATAAAACAAGCGAACAAACCCGGGTGATCGGTCAANTTCCACGCCGAAAATGGGGTGGTGACCCGGTGGCCNAACACTACTTTACCCCGGAAAGAATGACGGAAACTGCTGGAA] [+] EMBL BX468831 [GCAGAATCGCGCACGAGGGCAAAATTGGTTCCCCGTTCGGTGTCTCTTGTTGTACAAATCTTTGGGCCAATATCCCCGTCTTTTCCTCGTTATCTGTGTTTAGTTTTCTTTTCTTTCTACACTTTGCTGTTGTTAGCTAGTGGATAAGCGTTTTATTTCGATTGTTGTTGCATTAAATGTACGCTCGATTTTTGTGTCTACTGTAGGCNGTGGTACGATAACTTTGGATAAAAAAAAACAAACAAACAAAACAAAGCTATCTACAGTGAAAAATAGAAGCGACGTAAGAGATAACACACACGTCAACACAATGCTCCGTATCTTCCGCAATGCCATACGTGGACAAACGCATCACCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGCCAAGCGCTACNGTCAGTAAAAGGATCNACTACGGAGTTCGACCAGGACAGGTGATAAAACAAGCGAACAAACCCGGGTGATCGGTCAANTTCCACGCCGAAAATGGGGTGGTGACCCGGTGGCCNAACACTACTTTACCCCGGAAAGAATGACGGAAACTGCTGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3248#0 ACTGGCATTTCGCCCGCATACGCTAATCTGTCAATAGCGACCGCTTTGTTCTTAAATTTC 60 consensus_3248#1 ------------------------------------------------------------ consensus_3248#0 TTTACGAAGTCCCTATTATCACATCAAGATGGGTAGGGAGGACAAAGCAACCTGGAAGTC 120 consensus_3248#1 -----------------------GCAGAATCGCGCACGAGGGCAAAATTGGTTCCCCGTT 37 ** ** * **** **** * ** consensus_3248#0 CAACTATTTCCTAAAAGCTCGTGCAACTGCTCGA-CGAATACCCGAGATGTTTCATCGTC 179 consensus_3248#1 CGG-TGTCTCTTG-----TTGTACAAATCTTTGGGCCAATATCCCCGTCTTTTCCTCGTT 91 * * * ** * * ** *** * * * * **** ** * **** **** consensus_3248#0 GGCGCTGACAATGTCGGCTCCCGTCAGATGCAA----ACCATCCGTATGTCGCTCCGCGG 235 consensus_3248#1 ATCTGTGTTTAGTTTTCTTTTCTTTCTACACTTTGCTGTTGTTAGCTAGTGGATAAGCGT 151 * ** * * * * * * * * * ** * * *** consensus_3248#0 TTCGGCCATCGTGCTGATGGGCAAGA-ACAC-CATGATGCGCAAGGCCATTCGCGGGCAT 293 consensus_3248#1 TTTATTTCGATTGTTGTTGCATTAAATGTACGCTCGATTTTTGTGTCTACT-GTAGGCNG 210 ** ** ** ** * * ** * *** * * * * * *** consensus_3248#0 CTGGAGAACAACCAGAACCTGGAGAAGCTGCTCAACCACATCAAGGGCAACGTGGGCTTC 353 consensus_3248#1 TGGTACGATAACTTTGGATAAAAAAAAACAAACAAACAAAACAAAGCTATC-----TACA 265 * * * *** * ** *** ** * *** * * * consensus_3248#0 GTGTTCACCAAGGGCGATCTGGCCGAGATCCGCGACAAGCTGACCGAGAGCAAGGTGCGT 413 consensus_3248#1 GTGAAAAATAGAAGCGACGTAA--GAGATAACACACACGTCAACACAATGCTCCGTATCT 323 *** * * **** * ***** *** * ** * ** ** * consensus_3248#0 GCCCCGGC-CCGTGCCGGTGCGATCGCTCCGCTCG-AGGTCGTCATCCCGGCCCAGAACA 471 consensus_3248#1 TCCGCAATGCCATACGTGGACAAACGCATCACCCGCAAGACGTTCTCCTT-CTCAG---- 378 ** * ** * * * * * *** * * ** * * *** *** * *** consensus_3248#0 CCGGTCTCGGTCCGGAGAAGACCTCCTTCTTCCAGGCCCTGTCGATCCCGACCA-AGATT 530 consensus_3248#1 -CCATTGCGGCCAAGCG--------CTACNGTCAG----TAAAAGGATCNACTACGGAGT 425 * * *** * * * ** * *** * * ** * ** * consensus_3248#0 TCCAAGGGTACGATTGAAATCATCAACGACGTGCCCATCCTGAAGCCGGGCGACAAGGTC 590 consensus_3248#1 TCGACCAGGACAGGTGATAAAACAAGCGA---ACAAACCCGGGTGATCGGT--CAANTTC 480 ** * * ** *** * * * *** * * ** * * ** *** ** consensus_3248#0 GGCGCTTCCGAGGCCACGCTGCTCAACATGCTGAACATCTCGCCGTTCTCGTACGGTCTG 650 consensus_3248#1 CACGCCGAAAATGGGGTGGTGACCCGGTGGCCNAACACTACTTTACCCCGGAAAGAATGA 540 *** * * * ** * ** **** * * * * * consensus_3248#0 CAGATCCAGCAGGTGTACGATTCGGGCTCGATCTTCTCGCCGGAAATCCTCGACATCAAG 710 consensus_3248#1 CGGAAACTGCTGGAA--------------------------------------------- 555 * ** * ** ** consensus_3248#0 GCGGAGGATCTGCGCGCCAAGTTCCAGGCTGGAGTCGCCAACCTGGCTGCCGTGTCGCTC 770 consensus_3248#1 ------------------------------------------------------------ consensus_3248#0 CAGATCGGATACCCGACGCTGGCTTCGGTGCCGCACAGCATTGCCAACGGTTTCCGCAAC 830 consensus_3248#1 ------------------------------------------------------------ consensus_3248#0 CTGCTGGCCATTGCCGCCGTCACCGAGGTTGAGTTCAAGGAGGCCGAAACGGTCAAGGAG 890 consensus_3248#1 ------------------------------------------------------------ consensus_3248#0 TTCATCAAGGATCCGAGCAAGTTCGCCGCTGCCACGGCAACGACGGCCCAATGGCGACAC 950 consensus_3248#1 ------------------------------------------------------------ consensus_3248#0 GCTGGCCATTCTTCTTGTTACGTACCAAAATACGTATTTTTCTGTGAAACCAACTAAAGA 1010 consensus_3248#1 ------------------------------------------------------------ consensus_3248#0 GCAAAGCACATTAAAAGTTACACAAAAGCCGGTGAGTCAGAATCGCAAGAGAAACA 1066 consensus_3248#1 -------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||