These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3255#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 625 fasta sequence [CCGCCCACGCGTCCGCGGCTGCAAAC-GCGTGCATCGTCCATTTTTACCACCTCGATCCGGCTGTTCAGTTCTGCGATTGCGAAAAGCATGGAGAAGCACGAAGTCGTCCCCGATGTGGTGCCGGTCGCCCCGGCCGAGGTGGCCAAGGTAACCTACCCGAGCGGTGCCGTCGTCAGCGAGGGCAACGTACTCACCCCCACGCAGGTAAAGGACGTGCCGAAGGTGGAATGGAACGCGGACAGTGGCGCCCTGTACACGCTCTGCATGACCGATCCGGATGCGCCGAGCCGCAAGGAACCGACGTACCGCGAGTGGCACCACTGGCTGGTCGGCAACATTCCCGGGGCCGATGTAGCGCAGGGCGAAACGCTGTCGGCGTACGTGGGCTCGGGCCCACCGCAGGGAACCGGCCTCCATCGGTACGTGTTTCTGGTGTACAAACAGAACGGCAAGCTGACGTTCGATGAGCCGCGGCTGACCAACACGAGCGCGGACAACCGTGGCGGATTCGCCATCCGCAAGTTTGCCGAGAAGTACCAGCTGGGCAATCCGGTGGCGGGCAACTTCTATCAGGCCGAGTGGGACGATTATGTGCCGCTGCTGTACAAGCAGCTGGGTGCATAAA] [+] EMBL BM577753 [CCGCCCACGCGTCCGCGGCTGCAAAC GCGTGCATCGTCCATTTTTACCACCTCGATCCGGCTGTTCAGTTCTGCGATTGCGAAAAGCATGGAGAAGCACGAAGTCGTCCCCGATGTGGTGCCGGTCGCCCCGGCCGAGGTGGCCAAGGTAACCTACCCGAGCGGTGCCGTCGTCAGCGAGGGCAACGTACTCACCCCCACGCAGGTAAAGGACGTGCCGAAGGTGGAATGGAACGCGGACAGTGGCGCCCTGTACACGCTCTGCATGACCGATCCGGATGCGCCGAGCCGCAAGGAACCGACGTACCGCGAGTGGCACCACTGGCTGGTCGGCAACATTCCCGGGGCCGATGTAGCGCAGGGCGAAACGCTGTCGGCGTACGTGGGCTCGGGCCCACCGCAGGGAACCGGCCTCCATCGGTACGTGTTTCTGGTGTACAAACAGAACGGCAAGCTGACGTTCGATGAGCCGCGGCTGACCAACACGAGCGCGGACAACCGTGGCGGATTCGCCATCCGCAAGTTTGCCGAGAAGTACCAGCTGGGCAATCCGGTGGCGGGCAACTTCTATCAGGCCGAGTGGGACGATTATGTGCCGCTGCTGTACAAGCAGCTGGGTGCATAAA] [+] EMBL BM576300 [CCGCCCACGCGTCCGCCCACGCGTCCGGCGTGCATCGTCCATTTTTACCACCTCGATCCGGCTGTTCAGTTCTGCGATTGCGAAAAGCATGGAGAAGCACGAAGTCGTCCCCGATGTGGTGCCGGTCGCCCCGGCCGAGGTGGCCAAGGTAACCTACCCGAGCGGTGCCGTCGTCAGCGAGGGCAACGTACTCACCCCCACGCAGGTAAAGGACGTGCCGAAGGTGGAATGGAACGCGGACAGTGGCGCCCTGTACACGCTCTGCATGACCGATCCGGATGCGCCGAGCCGCAAGGAACCGACGTACCGCGAGTGGCACCACTGGCTGGTCGGCAACATTCCCGGGGCCGATGTAGCGCAGGGCGAAACGCTGTCGGCGTACGTGGGCTCGGGCCCACCGCAGGGAACCGGCCTCCATCGGTACGTGTTTCTGGTGTACAAACAGAACGGCAAGCTGACGTTCGATGAGCCGCGGCTGACCAACACGAGCGCGGACAACCGTGGCGGATTCGCCATCCGCAAGTTTGCCGAGAAGTACCAGCTGGGCAATCCGGTGGCGGGCAACTTCTATCAGGCCGAGTGGGACGATTATGTGCCGCTGCTGTACAAGCAGCTGGGTGCA ] consensusID : consensus_3255#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 334 fasta sequence [GCTAGAATGAATCGTTTGCTCGTCAGTGCACTTTTGGTGACGGTTTCGGTTGCCCTCGTCCACGGTGCTACCGTTGCGAGCGGGCCGAACAAGAAACTGAACATTCCCGCATTCAACAATGCGGGAAAAACGGTCGGCGTTGAGATCCCGGTGCGAAGCGGCTGTTCCACATAAAGGGTACGAAGAATATTCGCGTCCGCCAGGTCGAGCTGGCCGTGTCGGCCATGAACAAGGGCGACTGCTTCATACTGGACGCGGGTCGTGAAATCTACGTGTACGTCGGCCCGCATGCGGGTCGCGTCGAGAAGCTGAAGGCGATCAACTTTGCGAACGA] [+] EMBL AGA285380 [GCTAGAATGAATCGTTTGCTCGTCAGTGCACTTTTGGTGACGGTTTCGGTTGCCCTCGTCCACGGTGCTACCGTTGCGAGCGGGCCGAACAAGAAACTGAACATTCCCGCATTCAACAATGCGGGAAAAACGGTCGGCGTTGAGATCCCGGTGCGAAGCGGCTGTTCCACATAAAGGGTACGAAGAATATTCGCGTCCGCCAGGTCGAGCTGGCCGTGTCGGCCATGAACAAGGGCGACTGCTTCATACTGGACGCGGGTCGTGAAATCTACGTGTACGTCGGCCCGCATGCGGGTCGCGTCGAGAAGCTGAAGGCGATCAACTTTGCGAACGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3255#0 CCGCCCACGCGTCCGCGGCTGCAAACGCGTGCATCGTCCATTTTTACCACCTCGATCCGG 60 consensus_3255#1 ------------------------------------------------------------ consensus_3255#0 CTGTTCAGTTCTGCGATTGCGAAAAGCATGGAGAAGCACGAAGTCGTCCCCGATGTGGTG 120 consensus_3255#1 ------------------------------------------------------------ consensus_3255#0 CCGGTCGCCCCGGCCGAGGTGGCCAAGGTAACCTACCCGAGCGGTGCCGTCGTCAGCGAG 180 consensus_3255#1 ------------------------------------------------------------ consensus_3255#0 GGCAACGTACTCACCCCCACGCAGGTAAAGGACGTGCCGAAGGTGGAATGGAACGCGGAC 240 consensus_3255#1 -----------------------------------------GCTAGAATGAATCGTTTGC 19 * * ***** * ** * consensus_3255#0 AGTGGCGCCCTGTACACGCTCTGCATGACCGATCCGGATGCGCCGAGCCGCAAGGAACCG 300 consensus_3255#1 -------TCGTCAGTGCACTTTTGGTGACGGTTTCGGTTGCCCTCGTCCAC--GGTGCTA 70 * * * ** * **** * * *** *** * ** * ** * consensus_3255#0 ACGTACCGCGAGTGGCACCACTGGCTGGTCGGCAACATTCCCGGGGCCGATGTAGCGCAG 360 consensus_3255#1 CCGT--TGCGAGCGGGCCGAACAAGAAACTG--AACATTCCCGCATTCAACAATGC---G 123 *** ***** ** * * * ********** * * ** * consensus_3255#0 GGCGAAACGCTGTCGGCGTACGTGGGCTCGGGCCCACCGCAGGGAACCGGCCTCCATCGG 420 consensus_3255#1 GGAAAAACG--GTCGGCGT---TGAGATC-------CCGGTGCGAAGCGGC--------- 162 ** ***** ******** ** * ** *** * *** **** consensus_3255#0 TACGTGTTTCTGGTGTACAAACAGAACGGCAAGC--TGACGTTCGATGAGCCGCGGCTGA 478 consensus_3255#1 ----TGTTCC----ACATAAAGGGTACGAAGAATATTCGCGTCCGCCAGGTCG-AGCTGG 213 **** * * *** * *** * * *** ** * ** **** consensus_3255#0 CCAACACGAGCGCGGACAACCGTGGCGGATTCGCCATCCGCAAGTTTGCCGAGAAGTACC 538 consensus_3255#1 CCGTGTCGGCCATGAACAAGGGCGACTGCTTCATACTGGACGCGGGTCGTGAAATCTACG 273 ** ** * * **** * * * * *** * * * * ** * *** consensus_3255#0 AGCTGGGCAATCCGGTGGCGGGCAACTTCTATCAGGCCGAGTGGGACGATTATGTGCCGC 598 consensus_3255#1 TGTACGTCGGCCCGCATGCGGGTCGCGTCGAGAAGCTGAAGGCGATCAACTTTGCGA-AC 332 * * * *** ***** * ** * ** ** * * * * ** * * consensus_3255#0 TGCTGTACAAGCAGCTGGGTGCATAAA 625 consensus_3255#1 GA------------------------- 334 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||