cluster # 3256

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Anopheles gambiae
cluster # 3256 cluster # 3256 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3256#0 length = 688 sequences # 1

consensus_3256#1 length = 681 sequences # 2

consensusID : consensus_3256#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 688
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGGCCGAGGGTGCGTCAAGATCTACGATATGGCGCCCGCAATGCGCGGTGTCGGTGTGGGTCAATCGGTCGCAATGGTCGTGGCAATGTCGTACTACACACCGATCCTGGCGATCACTCTGCGCTATCTGTTGCTCTCGTTTAGCAGTGAGCTGCCGTGGAGCAAGTGCGATCATTCGTGGAGTCGGTGTATCAATTCGGACTTTCTTGGATATGCGAACGTTACGAATGGACTGGCCGAGGATCGCCGGAACGTTTCCGCTGAGCTGTACTTTACCAACACCATAATGCACCGAGCACCATTGGCAGAGGGACTTGGATGGCCAGATGGCAAGCTGGTCCTGTGTCTACTCGTCTCCTGGTCCATTCTGGTTGTGATCCTCATCAAAGGAGTTCGCAGCACCGGGAAAGCGGCCTACTTTCTTGCCATCTTCCCGTATGTAATCATTTTCATCCTGCTTGCCCACTCCCTCAGTCTGGAAGGTTCGCTCGAGGGTATCAAGTTCTTCCTAACCCCCAAATGGGAAAGCCTATTCTCAGCCAAGGTATGGATGGAAGCAGTCACACAGTGTTTCTTCTCCCTGTCAATCTGTTTTGGTGGAATCATTGCGTACTCCTCGTTCAATAATTTCTCCAATAATGTCTATCGTGATGCAATGATCAT]

[+] EMBL BM653918             [CCGCGGACGCGTGGGCGGACGCGTGGGGCCGAGGGTGCGTCAAGATCTACGATATGGCGCCCGCAATGCGCGGTGTCGGTGTGGGTCAATCGGTCGCAATGGTCGTGGCAATGTCGTACTACACACCGATCCTGGCGATCACTCTGCGCTATCTGTTGCTCTCGTTTAGCAGTGAGCTGCCGTGGAGCAAGTGCGATCATTCGTGGAGTCGGTGTATCAATTCGGACTTTCTTGGATATGCGAACGTTACGAATGGACTGGCCGAGGATCGCCGGAACGTTTCCGCTGAGCTGTACTTTACCAACACCATAATGCACCGAGCACCATTGGCAGAGGGACTTGGATGGCCAGATGGCAAGCTGGTCCTGTGTCTACTCGTCTCCTGGTCCATTCTGGTTGTGATCCTCATCAAAGGAGTTCGCAGCACCGGGAAAGCGGCCTACTTTCTTGCCATCTTCCCGTATGTAATCATTTTCATCCTGCTTGCCCACTCCCTCAGTCTGGAAGGTTCGCTCGAGGGTATCAAGTTCTTCCTAACCCCCAAATGGGAAAGCCTATTCTCAGCCAAGGTATGGATGGAAGCAGTCACACAGTGTTTCTTCTCCCTGTCAATCTGTTTTGGTGGAATCATTGCGTACTCCTCGTTCAATAATTTCTCCAATAATGTCTATCGTGATGCAATGATCAT]




>consensus_3256#0
CCGCGGACGCGTGGGCGGACGCGTGGGGCCGAGGGTGCGTCAAGATCTACGATATGGCGC
CCGCAATGCGCGGTGTCGGTGTGGGTCAATCGGTCGCAATGGTCGTGGCAATGTCGTACT
ACACACCGATCCTGGCGATCACTCTGCGCTATCTGTTGCTCTCGTTTAGCAGTGAGCTGC
CGTGGAGCAAGTGCGATCATTCGTGGAGTCGGTGTATCAATTCGGACTTTCTTGGATATG
CGAACGTTACGAATGGACTGGCCGAGGATCGCCGGAACGTTTCCGCTGAGCTGTACTTTA
CCAACACCATAATGCACCGAGCACCATTGGCAGAGGGACTTGGATGGCCAGATGGCAAGC
TGGTCCTGTGTCTACTCGTCTCCTGGTCCATTCTGGTTGTGATCCTCATCAAAGGAGTTC
GCAGCACCGGGAAAGCGGCCTACTTTCTTGCCATCTTCCCGTATGTAATCATTTTCATCC
TGCTTGCCCACTCCCTCAGTCTGGAAGGTTCGCTCGAGGGTATCAAGTTCTTCCTAACCC
CCAAATGGGAAAGCCTATTCTCAGCCAAGGTATGGATGGAAGCAGTCACACAGTGTTTCT
TCTCCCTGTCAATCTGTTTTGGTGGAATCATTGCGTACTCCTCGTTCAATAATTTCTCCA
ATAATGTCTATCGTGATGCAATGATCAT

consensusID : consensus_3256#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 681
fasta sequence

                              [CCGCCCACGCGTCCGCTGTTTTGGTGGAATCATTGCGTACTCCTCGTTCAATAATTTCTCCAATAATGTCTATCGTGATGCAATGATCATCTCATGGCTGGATACGTTCACATCCATCGTAGTCGGATGCATCGTGTTCGGAGTTCTCGGTAACTTGGCACACGTCACGCACTGCACCAGCATCCAGGATATTGTGCGCGAGGGCCCCGGACTAACGTTCATGGCGTATCCGGACGCGATCGCAAAGTTTGAGTACTGTCCGCAGCTCTTCTCCGTCCTATTCTTCCTCATGTTCTTCATCGTAGGCATTGGCAGTAATCTGGGAGCGATCACGAGTGTCATCACGGCTATTCGCGACCGATGCCCAACGGTTGAGAATTGGAAGATTGTAATGGGCGTTAGTGTGAGTATGTTTTGTATCAGTGTCGTCTACCTTGCCCCTGGGGGGTTAGATCTTCTGGACGTGCTGGATACATACGGAGCAAAATACGTTACGCTCACGCTAGCCCTGTTTGAGATTCTCACCTTTGCGTGGATTTACGGAGTGGATCGCGTTTGTCGCGACATCAAGTTTATGCTGCAGATCGAAACAGGACTGTTTTGGCGCATCTGCTGGGGCATTATTGCGCCGATGCTGGTCGGTGTAATACTGATCGTGAGTTTTGTCGACTACATCCCATT]

[+] EMBL BM639251             [CCGCCCACGCGTCCGCTGTTTTGGTGGAATCATTGCGTACTCCTCGTTCAATAATTTCTCCAATAATGTCTATCGTGATGCAATGATCATCTCATGGCTGGATACGTTCACATCCATCGTAGTCGGATGCATCGTGTTCGGAGTTCTCGGTAACTTGGCACACGTCACGCACTGCACCAGCATCCAGGATATTGTGCGCGAGGGCCCCGGACTAACGTTCATGGCGTATCCGGACGCGATCGCAAAGTTTGAGTACTGTCCGCAGCTCTTCTCCGTCCTATTCTTCCTCATGTTCTTCATCGTAGGCATTGGCAGTAATCTGGGAGCGATCACGAGTGTCATCACGGCTATTCGCGACCGATGCCCAACGGTTGAGAATTGGAAGATTGTAATGGGCGTTAGTGTGAGTATGTTTTGTATCAGTGTCGTCTACCTTGCCCCTGGGGGGTTAGATCTTCTGGACGTGCTGGATACATACGGAGCAAAATACGTTACGCTCACGCTAGCCCTGTTTGAGATTCTCACCTTTGCGTGGATTTACGGAGTGGATCGCGTTTGTCGCGACATCAAGTTTATGCTGCAGATCGAAACAGGACTGTTTTG                                                                              ]
[+] EMBL BM626922             [                                                                ccgcggacgCGTGGGGCAATGATCATCTCATGGCTGGATACGTTCACATCCATCGTAGTCGGATGCATCGTGTTCGGAGTTCTCGGTAACTTGGCACACGTCACGCACCGCACCAGCATCCAGGATATTGTGCGCGAGGGCCCCGGACTAACGTTCATGGCGTATCCGGACGCGATCGCAAAGTTTGAGTACTGTCCGCAGCTCTTCTCCGTCCTATTCTTCCTGATGTTCTTCATCGTAGGCATTGGCAGTAATCTGGGAGCGATCACGAGTGTCATCACGGCTATTCGCGACCGATGCCCAACGGTTGAGAATTGGAAGATTGTGATGGGCGTTAGTGTGAGTATGTTTTGTATCAGTGTCGTCTACCTTGCCCCTGGGGGGTTAGATCTTCTGGACGTACTGGATACATACGGAGCAAAGTACGTTACGCTCACGCTAGCCCTGTTTGAGATTCTTACCTTTGCGTGGATTTACGGAGTGGATCGCGTTTGTCGCGACATCAAGTTTATGCTGCAGATCGAAACAGGGCTGTTTTGGCGCATCTGCTGGGGCATTATTGCGCCGATGCTGGTCGGTGTAATACTGATCGTGAGTTTTGTCGACTACATCCCATT]




>consensus_3256#1
CCGCCCACGCGTCCGCTGTTTTGGTGGAATCATTGCGTACTCCTCGTTCAATAATTTCTC
CAATAATGTCTATCGTGATGCAATGATCATCTCATGGCTGGATACGTTCACATCCATCGT
AGTCGGATGCATCGTGTTCGGAGTTCTCGGTAACTTGGCACACGTCACGCACTGCACCAG
CATCCAGGATATTGTGCGCGAGGGCCCCGGACTAACGTTCATGGCGTATCCGGACGCGAT
CGCAAAGTTTGAGTACTGTCCGCAGCTCTTCTCCGTCCTATTCTTCCTCATGTTCTTCAT
CGTAGGCATTGGCAGTAATCTGGGAGCGATCACGAGTGTCATCACGGCTATTCGCGACCG
ATGCCCAACGGTTGAGAATTGGAAGATTGTAATGGGCGTTAGTGTGAGTATGTTTTGTAT
CAGTGTCGTCTACCTTGCCCCTGGGGGGTTAGATCTTCTGGACGTGCTGGATACATACGG
AGCAAAATACGTTACGCTCACGCTAGCCCTGTTTGAGATTCTCACCTTTGCGTGGATTTA
CGGAGTGGATCGCGTTTGTCGCGACATCAAGTTTATGCTGCAGATCGAAACAGGACTGTT
TTGGCGCATCTGCTGGGGCATTATTGCGCCGATGCTGGTCGGTGTAATACTGATCGTGAG
TTTTGTCGACTACATCCCATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3256#0      CCGCGGACGCGTGGGCGGACGCG-TGGGGCCGAGG-GTGCGTCAAGATCTACGATATGGC 58
consensus_3256#1      CCGCCCACGCGTCCGCTGTTTTGGTGGAATCATTGCGTACTCCTCGTTCAATAATTT--C 58
                      ****  ******  ** *    * ***   *   * ** *  *  * ** *  ** *  *

consensus_3256#0      GCCCGCAATGCGCGGTGTCG-GTGTGGGTCAATCGGTCGCAATGGTCGTGGCAATGTCGT 117
consensus_3256#1      TCCAATAATGTCTATCGTGATGCAATGATCATCTCATGGC--TGGATACGTTCACATC-C 115
                       **   ****      **   *    * ***     * **  ***    *   *  **  

consensus_3256#0      ACTACACACCGATCC-TGGCGATC--ACTCTGCGCTATCTGTTGCTCTCGTTTAGCAGTG 174
consensus_3256#1      ATCGTAGTCGGATGCATCGTGTTCGGAGTTCTCGGTAACT-TGGCACACGTCACGCACTG 174
                      *    *  * *** * * * * **  * *   ** ** ** * ** * ***   *** **

consensus_3256#0      AGCTGCCGTGGAGCAAGTGCGATCATTCGTGGAGTCGGTGTATCAATTCGGACTTTCTTG 234
consensus_3256#1      CACCAGCATCCAG-----GATATTGTGCGCGAGGGCCCCGGACTAACG-----TTCATGG 224
                        *   * *  **     *  **  * ** *  * *   * *  **       **  * *

consensus_3256#0      GATATGCGAACGTTACGAATGGACTGGCCGAGGATCGCCGGAACGTTTCCGCTGAGCTGT 294
consensus_3256#1      CGTATCCGGACG---CGATCGCAAAGTTTGAGTACTGTCCGCAGCTCTTCTCCGTCCTAT 281
                        *** ** ***   ***  * *  *   *** *  * * * *  * * * * *  ** *

consensus_3256#0      ACTTTACCAACACCATAATGCACCGAGCACCATTGGCAGAGGGACTTGGATGGCCAGATG 354
consensus_3256#1      TCTTCCTCA----TGTTCTTCATCGTA-GGCATTGGCAGTA--ATCTGGGAG---CGATC 331
                       ***   **      *  * ** **     *********    *  ***  *    *** 

consensus_3256#0      GCAAGCTGGTCCTGTGTCTACTCGTCTCCTGGTCCATTCTGGTTGTGATCCTCATCAAAG 414
consensus_3256#1      ACGAG-TGTCATCACGGCTATTCG-CGACCGATGCCCAACGGTTGAGAATTGGAAGATTG 389
                       * ** **       * *** *** *  * * * *     ***** **     *  *  *

consensus_3256#0      GAGTTCGCAGCACCGGGAAAGCGGCCTACTTTCTTGCCATCTTCCC-GTATGTAATCATT 473
consensus_3256#1      TAATGGGCGTTAGTGTGAGTATGTTTTGTATCAGTGTCGTCTACCTTGCCCCTGGGGGGT 449
                       * *  **   *  * **    *   *   *   ** * *** **  *    *      *

consensus_3256#0      TTCATCCTGCTTGCCCACTCCCTCAGTCTGGAAGGTTCGCTCGAGGGTATCAAGTTCTTC 533
consensus_3256#1      TAGATCTTCTGGACGTGCTGGATACATACGGAGCAAA-ATACGTTACGCTCACGCTAGCC 508
                      *  *** *     *   **   *   *  ***         **      *** * *   *

consensus_3256#0      CTAACCCCCAAATGGGAAAGCCTATTCTCAGCCAAGGTATGGATGGAAGCAGTC---ACA 590
consensus_3256#1      CTG--TTTGAGATTCTCACCTTTGCGTGGATTTACGGAGTGGATCGCGTTTGTCGCGACA 566
                      **       * **    *    *      *   * **  ***** *     ***   ***

consensus_3256#0      CAGTGTTTCTTCTCCCTGTCAAT------CTGTTTTGGTGGAATCATTGCGTACTCCTCG 644
consensus_3256#1      TCAAGTTTATGCTGCAGATCGAAACAGGACTGTTTTGGCGCATCTGCTGGGGCATTATTG 626
                          **** * ** *   ** *       ********* * *     ** *   *  * *

consensus_3256#0      T-TCAATAATTTCTCCAATAATGTCTATCGTGA--TGCAATGATCAT-------- 688
consensus_3256#1      CGCCGATGCTGGTCGGTGTAATACTGATCGTGAGTTTTGTCGACTACATCCCATT 681
                         * **  *        ****    *******  *     **  *