These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_326#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence [CCGCGCGTTCGGTTTGCGCAAACCTATCCTCTCTCTCTACTCCCGCGAAGGCTCCGCGTGACGCCTGGCCACCAGCTAAAAAAACAAAACTTCCCTCGTGTCTCCATTCGACCGTGTAATGGTAGTCCAAAAATTCGTTCACTCGTCACCGGTTCAATTACCTCCCTTTAGCCCGAACACCAGACGAGAACACCGTCAATCGTCCATCCAATCTAAGCTGAAGCTGTTTCGGAATTGGAATTCGATGCCGTTCAAAGTGTGCATGAAGCTTTAGCAAAGGTGTGTTGAGACAGTGTTTTTGGAGAACTTCTTTTTTGTGAGCTTAATTTACAAAGAGGATTGTTTAGTTTTTGTTTCTCGTGTTGAACGCGTGTGCCTATTAGGAGTGATTTCGTGCGCTTTTTTATTCCCTTATGCAATTAAGGCACAAGCAGGCGATTGATTTTCGTGCCGTATAGTATTGTGAATTTTTGAACCGCTTCTATCCTAGACTAATTCCATCCGAGTCAATCGTTAGTCAATGTCATTTCGGTGCCCTAAAGTTGACCGTATGCGGGTCAATCTTTTGAAGATAATTGTACAGTAAAAGCATTAAGTGACGGTTAATGTTTTATTTCGTTTTGTCGTGTTTTTGTTGTGTCTGCATTTCGTTACGTACATCCTTCATCTCTGGCAGCAGCCTTCG] [+] EMBL BM640073 [CCGCGCGTTCGGTTTGCGCAAACCTATCCTCTCTCTCTACTCCCGCGAAGGCTCCGCGTGACGCCTGGCCACCAGCTAAAAAAACAAAACTTCCCTCGTGTCTCCATTCGACCGTGTAATGGTAGTCCAAAAATTCGTTCACTCGTCACCGGTTCAATTACCTCCCTTTAGCCCGAACACCAGACGAGAACACCGTCAATCGTCCATCCAATCTAAGCTGAAGCTGTTTCGGAATTGGAATTCGATGCCGTTCAAAGTGTGCATGAAGCTTTAGCAAAGGTGTGTTGAGACAGTGTTTTTGGAGAACTTCTTTTTTGTGAGCTTAATTTACAAAGAGGATTGTTTAGTTTTTGTTTCTCGTGTTGAACGCGTGTGCCTATTAGGAGTGATTTCGTGCGCTTTTTTATTCCCTTATGCAATTAAGGCACAAGCAGGCGATTGATTTTCGTGCCGTATAGTATTGTGAATTTTTGAACCGCTTCTATCCTAGACTAATTCCATCCGAGTCAATCGTTAGTCAATGTCATTTCGGTGCCCTAAAGTTGACCGTATGCGGGTCAATCTTTTGAAGATAATTGTACAGTAAAAGCATTAAGTGACGGTTAATGTTTTATTTCGTTTTGTCGTGTTTTTGTTGTGTCTGCATTTCGTTACGTACATCCTTCATCTCTGGCAGCAGCCTTCG] consensusID : consensus_326#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 483 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCGCGAAGGCTCCGCGTGACGCCTGGCCACCAGCTAAAAAAACAAAACTTCCCTCGTGTCTCCATTCGACCGTGTAATGGTAGTCCAAAAATTCGTTCACTCGTCACCGGTTCAATTACCTCCCTTTAGCCCGAACACCAGACGAGAACACCGTCAATCGTCCATCCAATCTAAGCTGAAGCTGTTTCGGAATTGGAATTCGATGCCGTTCAAAGTGTGCATGAAGCTTTAGCAAAGGTGTGTTGAGACAGTGTTTTTGGAGAACTTCTTTTTTGTGAGCTTAATTTACAAAGAGGATTGTTTAGTTTTTGTTTCTCGTGTTGAACGCGTGTGCCTATTAGGAGTGATTTCGTGCGCTTTTTTATTCCCTTATGCAATTAAGGCACAAGCAGGCGATTGATTTTCGTGCCGTATAGTATTGTGAATTTTTGAACCGCTTCTATCCTAGACTAATTCC] [+] EMBL BM625796 [CCGCGGACGCGTGGGCGGACGCGTGGGCGCGAAGGCTCCGCGTGACGCCTGGCCACCAGCTAAAAAAACAAAACTTCCCTCGTGTCTCCATTCGACCGTGTAATGGTAGTCCAAAAATTCGTTCACTCGTCACCGGTTCAATTACCTCCCTTTAGCCCGAACACCAGACGAGAACACCGTCAATCGTCCATCCAATCTAAGCTGAAGCTGTTTCGGAATTGGAATTCGATGCCGTTCAAAGTGTGCATGAAGCTTTAGCAAAGGTGTGTTGAGACAGTGTTTTTGGAGAACTTCTTTTTTGTGAGCTTAATTTACAAAGAGGATTGTTTAGTTTTTGTTTCTCGTGTTGAACGCGTGTGCCTATTAGGAGTGATTTCGTGCGCTTTTTTATTCCCTTATGCAATTAAGGCACAAGCAGGCGATTGATTTTCGTGCCGTATAGTATTGTGAATTTTTGAACCGCTTCTATCCTAGACTAATTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_326#0 CCGCGCGTTCGGTTTGCGCAAACCTATCCTCTCTCTCTACTCCCGCGAAGGCTCCGCGTG 60 consensus_326#1 ---------------CCGCGGACGCGTGGGCGGACGC-GTGGGCGCGAAGGCTCCGCGTG 44 *** ** * * * * ***************** consensus_326#0 ACGCCTGGCCACCAGCTAAAAAAACAAAACTTCCCTCGTGTCTCCATTCGACCGTGTAAT 120 consensus_326#1 ACGCCTGGCCACCAGCTAAAAAAACAAAACTTCCCTCGTGTCTCCATTCGACCGTGTAAT 104 ************************************************************ consensus_326#0 GGTAGTCCAAAAATTCGTTCACTCGTCACCGGTTCAATTACCTCCCTTTAGCCCGAACAC 180 consensus_326#1 GGTAGTCCAAAAATTCGTTCACTCGTCACCGGTTCAATTACCTCCCTTTAGCCCGAACAC 164 ************************************************************ consensus_326#0 CAGACGAGAACACCGTCAATCGTCCATCCAATCTAAGCTGAAGCTGTTTCGGAATTGGAA 240 consensus_326#1 CAGACGAGAACACCGTCAATCGTCCATCCAATCTAAGCTGAAGCTGTTTCGGAATTGGAA 224 ************************************************************ consensus_326#0 TTCGATGCCGTTCAAAGTGTGCATGAAGCTTTAGCAAAGGTGTGTTGAGACAGTGTTTTT 300 consensus_326#1 TTCGATGCCGTTCAAAGTGTGCATGAAGCTTTAGCAAAGGTGTGTTGAGACAGTGTTTTT 284 ************************************************************ consensus_326#0 GGAGAACTTCTTTTTTGTGAGCTTAATTTACAAAGAGGATTGTTTAGTTTTTGTTTCTCG 360 consensus_326#1 GGAGAACTTCTTTTTTGTGAGCTTAATTTACAAAGAGGATTGTTTAGTTTTTGTTTCTCG 344 ************************************************************ consensus_326#0 TGTTGAACGCGTGTGCCTATTAGGAGTGATTTCGTGCGCTTTTTTATTCCCTTATGCAAT 420 consensus_326#1 TGTTGAACGCGTGTGCCTATTAGGAGTGATTTCGTGCGCTTTTTTATTCCCTTATGCAAT 404 ************************************************************ consensus_326#0 TAAGGCACAAGCAGGCGATTGATTTTCGTGCCGTATAGTATTGTGAATTTTTGAACCGCT 480 consensus_326#1 TAAGGCACAAGCAGGCGATTGATTTTCGTGCCGTATAGTATTGTGAATTTTTGAACCGCT 464 ************************************************************ consensus_326#0 TCTATCCTAGACTAATTCCATCCGAGTCAATCGTTAGTCAATGTCATTTCGGTGCCCTAA 540 consensus_326#1 TCTATCCTAGACTAATTCC----------------------------------------- 483 ******************* consensus_326#0 AGTTGACCGTATGCGGGTCAATCTTTTGAAGATAATTGTACAGTAAAAGCATTAAGTGAC 600 consensus_326#1 ------------------------------------------------------------ consensus_326#0 GGTTAATGTTTTATTTCGTTTTGTCGTGTTTTTGTTGTGTCTGCATTTCGTTACGTACAT 660 consensus_326#1 ------------------------------------------------------------ consensus_326#0 CCTTCATCTCTGGCAGCAGCCTTCG 685 consensus_326#1 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||