These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3261#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGGTGTTAGTAACTAAATATTGTAAGAAAGATTCCAGAGACATTTACGGAAAAGAAACAAGACGCGCGAGTGGCGGAAGCGCAGTGTAGCGTCCGAGAGGGGAGGAATACAGGGAAGGAGTGTGAGGGAAGGGGAGAGTGTATTCGAGCCGCGTGCGTGAATCCAGCACCTCCACATTGCCGCCGGTCTGCGGGGAGAAAACTACACCAGTAGCGCGCCGGAAGATTGCGATCGATCGAGCGACGAGCGAGAGCAGCAAGAGAAGCAACAAATTCCGCAAATGGTAGCAGATCCAGTAACAACAACAACAACGCAGGAGAGAAGAATTGACACAAGGATACAGCAGATTTAGCAACCCAGCAGTCCGCAGTAGCAGCAGCAGGGGCACCCCATTTAGCGCCGCGGCTGTCTACGGAGAAAGAACATCCAGAAGAACAACAGCCACGTCCTTTCTATATAAACAAAAATAAAAAAAAAATCACGGTGTAAAAGGAATTAATAACAGAAGAAAGCCCTAAATCTACTACTTTTATTGCTAATAAAATTATTC] [+] EMBL BM576958 [CCGCGGACGCGTGGGCGGACGCGTGGGGTGTTAGTAACTAAATATTGTAAGAAAGATTCCAGAGACATTTACGGAAAAGAAACAAGACGCGCGAGTGGCGGAAGCGCAGTGTAGCGTCCGAGAGGGGAGGAATACAGGGAAGGAGTGTGAGGGAAGGGGAGAGTGTATTCGAGCCGCGTGCGTGAATCCAGCACCTCCACATTGCCGCCGGTCTGCGGGGAGAAAACTACACCAGTAGCGCGCCGGAAGATTGCGATCGATCGAGCGACGAGCGAGAGCAGCAAGAGAAGCAACAAATTCCGCAAATGGTAGCAGATCCAGTAACAACAACAACAACGCAGGAGAGAAGAATTGACACAAGGATACAGCAGATTTAGCAACCCAGCAGTCCGCAGTAGCAGCAGCAGGGGCACCCCATTTAGCGCCGCGGCTGTCTACGGAGAAAGAACATCCAGAAGAACAACAGCCACGTCCTTTCTATATAAACAAAAATAAAAAAAAAATCACGGTGTAAAAGGAATTAATAACAGAAGAAAGCCCTAAATCTACTACTTTTATTGCTAATAAAATTATTC] consensusID : consensus_3261#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence [ATTCTACCGGTTCCATCGTCCCCGGAAGCACATTGTCCGCTCATGAGGGCTTTATTCGGGAATGGAATGTAACACTCGGTTTTCCAAAAAGCAAACGGCTTGAGCAAACAACACCGCGCGTTTATGGCAGCATGAAAATGAACAGATTTTCGCTACAAATTCTCCGCATACAACACGACGGCGTCTGGAATGATGCTAACCCCGTGGTCCGACTCCCCCGGTAATCGAGGTCCTCCGCACAGCTTTTGGTAGAAAGGTGGTACCGGCCGGGGGTTTACTTGGATCTCGCACGCATTTCCCTGCGCTTACGCTTTAACCTCCGCATACGCTTTTAACGCCACTAAGCTCTAATTTTTCACGGCAGCAAAAGACGATTTACGTCCGCACTGCACGAATTGATTGGATGAAAGAGCCAGTTGGCCAACAGTTCTCGAGGATTTCGCAC] [+] EMBL CNS09FWD [ATTCTACCGGTTCCATCGTCCCCGGAAGCACATTGTCCGCTCATGAGGGCTTTATTCGGGAATGGAATGTAACACTCGGTTTTCCAAAAAGCAAACGGCTTGAGCAAACAACACCGCGCGTTTATGGCAGCATGAAAATGAACAGATTTTCGCTACAAATTCTCCGCATACAACACGACGGCGTCTGGAATGATGCTAACCCCGTGGTCCGACTCCCCCGGTAATCGAGGTCCTCCGCACAGCTTTTGGTAGAAAGGTGGTACCGGCCGGGGGTTTACTTGGATCTCGCACGCATTTCCCTGCGCTTACGCTTTAACCTCCGCATACGCTTTTAACGCCACTAAGCTCTAATTTTTCACGGCAGCAAAAGACGATTTACGTCCGCACTGCACGAATTGATTGGATGAAAGAGCCAGTTGGCCAACAGTTCTCGAGGATTTCGCAC] consensusID : consensus_3261#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 200 fasta sequence [CCGCCCACGCGTCCGGCATCATGAAGTTATACGCCTTTGCTCTCGTGCTATGCGTCGGTCTGGCCGTAGGGGCCGAGGTTGATAGTGTACCGGAAGTGCCATCGGACCTGCAGCAGCAACTGGACGAGCTGCAGCTGGCCGATAAACCAGAAGCTCCTGTGGATGACGCCGAACAACCTCTTCCCCCAAGTGGCGATGAA] [+] EMBL BM645019 [CCGCCCACGCGTCCGGCATCATGAAGTTATACGCCTTTGCTCTCGTGCTATGCGTCGGTCTGGCCGTAGGGGCCGAGGTTGATAGTGTACCGGAAGTGCCATCGGACCTGCAGCAGCAACTGGACGAGCTGCAGCTGGCCGATAAACCAGAAGCTCCTGTGGATGACGCCGAACAACCTCTTCCCCCAAGTGGCGATGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3261#1 -------------------------------ATTCTACCGGTTCCATCGTCCCCGGAAGC 29 consensus_3261#2 ------------------------------------------------------------ consensus_3261#0 CCGCGGACGCGTGGGCGGACGCGTGGGGTGTTAGTAACTAAATATTGTAAGAAAGATTCC 60 consensus_3261#1 ACATTGTCCGCTCATGAGGGCTTTATTCGGGAATGGAATGTAACACTCGGTTTTCCAAAA 89 consensus_3261#2 ------------------------------------------------------------ consensus_3261#0 AGAGACATTTACGGAAAAGAAACAAGACGCGCGAGTGGCGGAAGCGCAGTGTAGCGTCCG 120 consensus_3261#1 AGCAAACGGCTTGAGCAAACAACACCGCGCGTTTATGGCAGCATGAAAATGAACAGATTT 149 consensus_3261#2 ----------------------CCGCCCACGCGTCCGGCATCATGAAGTTATACGCCTTT 38 consensus_3261#0 AGAGGGGAGGAATACAGGGAAGGAGTGTGAGGGAAGGGGAGAGTGTATTCGAGC-CGCGT 179 * ** * ** * * * consensus_3261#1 TCGCTACAAATTCTCCGCATACAACACGACGGCGT-CTGGAATGATGCTAACCCCGTGGT 208 consensus_3261#2 GCTCTCGTGCTATGCGTCGGTCTGGCCGTAGGGGC-CGAGGTTGATAGTGTACCGGAAGT 97 consensus_3261#0 GCGTGAATCCAGCACCTCCACATTGCCGCCGGTCTGCGGGGAGAAAACTACACCAGTAGC 239 * * * ** ** * * * * ** * * consensus_3261#1 CCGACTCCCC-CGGTAATCG-AGGTCCTCCGCACAGCTTTTGGTAGAAAGGTGGTACCGG 266 consensus_3261#2 GCCATCGGAC-CTGCAGCAG-CAACTGGACGAGCTGCAGCTGGCCGATAAACCAGAAGCT 155 consensus_3261#0 GCGCCGGAAGATTGCGATCGATCGAGCGACGAGCGAGAGCAGCAAGAGAAGCAACAAATT 299 * * * ** * * ** * * consensus_3261#1 CCGGGGGTTTACTTGGATCTCGCACGCATTTCCCTGCGCTTACGCTTTAACCTCCGCATA 326 consensus_3261#2 CCTGTGGATGACGCCGA----ACAACCTCTTCCCCCAAGTGGCGATGAA----------- 200 consensus_3261#0 CCGCAAATGGTAGCAGATCCAGTAACAACAACAACAACGCAGGAGAGAAGAATTGACACA 359 ** ** * * * consensus_3261#1 CGCTTTTAACGCCACTAA-GCTCTAATTTTTCACGGCAGCAAAAGACGATTTACGTCCGC 385 consensus_3261#2 ------------------------------------------------------------ consensus_3261#0 AGGATACAGCAGATTTAGCAACCCAGCAGTCCGCAGTAGCAGCAGCAGGGGCACCCCATT 419 consensus_3261#1 --ACTGCACGAATTGATTGGATGAAAGAGCCAGTTGGCCAACAGTTCTCGAGGATTTCGC 443 consensus_3261#2 ------------------------------------------------------------ consensus_3261#0 TAGCGCCGCGGCTGTCTACGGAGAAAGAACATCCAGAAGAACAACAGCCACGTCCTTTCT 479 consensus_3261#1 AC---------------------------------------------------------- 445 consensus_3261#2 ------------------------------------------------------------ consensus_3261#0 ATATAAACAAAAATAAAAAAAAAATCACGGTGTAAAAGGAATTAATAACAGAAGAAAGCC 539 consensus_3261#1 ------------------------------------ consensus_3261#2 ------------------------------------ consensus_3261#0 CTAAATCTACTACTTTTATTGCTAATAAAATTATTC 575 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||