cluster # 3268

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Anopheles gambiae
cluster # 3268 cluster # 3268 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3268#0 length = 292 sequences # 2

consensus_3268#1 length = 274 sequences # 1

consensusID : consensus_3268#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 292
fasta sequence

                              [CCGCTCGAATTTTATATATAATTAAATCTTTAAAATTCGAGAAAAATGTATTATAATAATTTATGATTTAATAAACCCTGAGACACAAGGTACAATAAATAATAAATTATTATAATAATGTTTCTCGAATTTTAAAGATTTAATTATATATAAAAGTTATTGTGGAATAACTATTGTTAAATATGTAATTAGAAATGAAATGCTCATCGTTTTAAAATATATCTAGTTCCTTAAGAAATGAATTTAATTTAGCTTATTTATTGGATTAAGTTAATTTTTTACTTTGATAATT]

[+] EMBL BM588685             [CCGCTCGAATTTTATATATAATTAAATCTTTAAAATTCGAGAAAAATGTATTATAATAATTTATGATTTAATAAACCCTGAGACACAAGGTACAATAAATAATAAATTATTATAATAATGTTTCTCGAATTTTAAAGATTTAATTATATATAAAAGTTA                                                                                                                                     ]
[+] EMBL BM575072             [                                                                                                      TAAATTATTATAATAATTTTTCTCGAATTTTAAAGATTTAATTATATATAAAAGTTATTGTGGAATAACTATTGTTAAATATGTAATTAGAAATGAAATGCTCATCGTTTTAAAATATATCTAGTTCCTTAAGAAATGAATTTAATTTAGCTTATTTATTGGATTAAGTTAATTTTTTACTTTGATAATT]




>consensus_3268#0
CCGCTCGAATTTTATATATAATTAAATCTTTAAAATTCGAGAAAAATGTATTATAATAAT
TTATGATTTAATAAACCCTGAGACACAAGGTACAATAAATAATAAATTATTATAATAATG
TTTCTCGAATTTTAAAGATTTAATTATATATAAAAGTTATTGTGGAATAACTATTGTTAA
ATATGTAATTAGAAATGAAATGCTCATCGTTTTAAAATATATCTAGTTCCTTAAGAAATG
AATTTAATTTAGCTTATTTATTGGATTAAGTTAATTTTTTACTTTGATAATT

consensusID : consensus_3268#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 274
fasta sequence

                              [GATGCCTGTTCGGGTGGTTCGTAGCCTTCCGGACGGTCGACGACGACACCGGAAGCTGCACCGGTCGACACTTCAGCAGCCTTGCCGCCGCCACCCCCGGGCAATTCCATCAGACGGGACAGATCGAATCGCGGCTCCTTCAGCACCTTCACCTGGCGGATGAAGACATCGGGCAGCGGGTACACGACCGGGCACGCCTTCTCGAAAACCTGGGCGAACGAGTGGGGCAGCAGCTCCCCCACCACACCCTTCAGATCCGGGCGGGGGAATCCAC]

[+] EMBL CNS09GWF             [GATGCCTGTTCGGGTGGTTCGTAGCCTTCCGGACGGTCGACGACGACACCGGAAGCTGCACCGGTCGACACTTCAGCAGCCTTGCCGCCGCCACCCCCGGGCAATTCCATCAGACGGGACAGATCGAATCGCGGCTCCTTCAGCACCTTCACCTGGCGGATGAAGACATCGGGCAGCGGGTACACGACCGGGCACGCCTTCTCGAAAACCTGGGCGAACGAGTGGGGCAGCAGCTCCCCCACCACACCCTTCAGATCCGGGCGGGGGAATCCAC]




>consensus_3268#1
GATGCCTGTTCGGGTGGTTCGTAGCCTTCCGGACGGTCGACGACGACACCGGAAGCTGCA
CCGGTCGACACTTCAGCAGCCTTGCCGCCGCCACCCCCGGGCAATTCCATCAGACGGGAC
AGATCGAATCGCGGCTCCTTCAGCACCTTCACCTGGCGGATGAAGACATCGGGCAGCGGG
TACACGACCGGGCACGCCTTCTCGAAAACCTGGGCGAACGAGTGGGGCAGCAGCTCCCCC
ACCACACCCTTCAGATCCGGGCGGGGGAATCCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3268#0      -----CCGCTCGAATTTTATATATAATTA-AATCTTTAAAATTCGAGAAAAATGTATTAT 54
consensus_3268#1      GATGCCTGTTCGGGTGGTTCGTAGCCTTCCGGACGGTCGACGACGACACCGG-AAGCTGC 59
                           * * ***  *  *   **   **     *  *  *   *** *         *  

consensus_3268#0      AATAATTTATGATTTAATAAACCCTGAGACACAAGGTACAATAAATAATAAATTATTATA 114
consensus_3268#1      ACCGGTCGACACTTCAGCAGCCTTGCCGCCGCCACCCCCGGGCAAT--TCCATCA----G 113
                      *    *  *   ** *  *  *     * * * *    *    ***  *  ** *     

consensus_3268#0      ATAATGTTTCTCGAATTTTAAAGATTTAATTATATATAAAAGTTATTGTGGAATAACTAT 174
consensus_3268#1      ACGGGACAGATCGAATCGCGGCTCCTTCAGCACCTTCACCTGGCGGATGAAGACATCGGG 173
                      *         ******         ** *  *  *  *   *          * * *   

consensus_3268#0      TGTTAAATATGTAATTAGAAATGAAATGCTCATCGTTTTAAAATATATCTAGTTCCTTAA 234
consensus_3268#1      CAGCGGGTACACGACCGGGCACGCCTTCTCGAAAACCTGGGCGAACGAGTGGGGC----A 229
                             **    *   *  * *   *    *     *      *    * *  *    *

consensus_3268#0      GAAATGAATTTAATTTAGCTTATTTATTGGATTAAGTTAATTTTTTACTTTGATAATT 292
consensus_3268#1      GCAGCTCCCCCACCACACCCTTCAGATCCGGGCGGGGGAATCCAC------------- 274
                      * *        *    * * *    **  *     *  ***