These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3302#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 832 fasta sequence [TTGTCACCAAACATCGAGGATATTTGCTGCAAACACTCGGTGACAAGGAAGTGCATGACTGGTTGTATGCAATCAATCCCCTGCTGGCCGGGCAAATTAGGTCTCGATTGGCCAGGAAAAACATTTCCAGCATAAGCAGCACTGGAAGTGGTGCAGGCGATCAGCAACAGGCGACGACGGGAGCGTCCGCACTGGCTGTAGCGGCCGCCCAGGGCAACGGAGGTGGCAGCAGTTCTGGAGGCAAATGAGATACAATAACGATGGAGTCCGTTCTAGTATACTAAACTACTGCGCAACGGCTACTCCTATACTGTCGCAGAATGTAGAGCGACCATAAACCATTACCACCATTATTCCTAGAAAGGATGATCCAAGTTTGACGTGATGCAATCGCCACCACCAAGAAAACCAAAATCAAACCAAAATAATTAGTAGTACTCGTTGTCGTTAACTCCTCCTCCCTCCTTCCCTCTCTCCACTTAGTTGTGTTGGTAGGTTTCGGTTTCGAGTTAAGAAATTCAACATCACAAATAAGGAAGAAGAAAACACGCAGCCAGACAAACTATGTCACGGTATGTGTCAAGAACATGTGAAGTTAGTTAGAAGAAGCGAGAACGGCATGAGTGTACGTCAGATGATGATGATGTTTTGGAGTGCGTGGCAGTTTGGCTTGAGATGATGATGGCGAGAAGGAAACGGCATGTGTGTGTGTGTGGGCCAAGAGCAATCGAAATATGATAGTGGGAGCGATGTGCAAGGCAGAGGACACCTACATAATACTTTCCGTTGGGCGAATCCTAAAAGAAAACATGGGAAAGATATTAATCAATTG] [+] EMBL BX607960 [TTGTCACCAAACATCGAGGATATTTGCTGCAAACACTCGGTGACAAGGAAGTGCATGACTGGTTGTATGCAATCAATCCCCTGCTGGCCGGGCAAATTAGGTCTCGATTGGCCAGGAAAAACATTTCCAGCATAAGCAGCACTGGAAGTGGTGCAGGCGATCAGCAACAGGCGACGACGGGAGCGTCCGCACTGGCTGTAGCGGCCGCCCAGGGCAACGGAGGTGGCAGCAGTTCTGGAGGCAAATGAGATACAATAACGATGGAGTCCGTTCTAGTATACTAAACTACTGCGCAACGGCTACTCCTATACTGTCGCAGAATGTAGAGCGACCATAAACCATTACCACCATTATTCCTAGAAAGGATGATCCAAGTTTGACGTGATGCAATCGCCACCACCAAGAAAACC ] [+] EMBL BM633134 [ ccgctAGTTCTGGAGGCAAATGAGATACAATAACGATGGAGTCCGTTCTAGTATACTAAACTACTGCGCAACGGCTACTCCTATACTGTCGCAGAATGTAGAGCGACCATAAACCATGACCACCATTATTCCTAGAAAGGATGATCCAAGTTTGACGTGATGCAATCGCCACCACCAAGAATACCAAAATCAAACCAAAATAATTAGTAGTACTCGTTGTCGTTAACTCCTCCTCCCTCCTTCCCTCTCTCCACTTAGTTGTGTTGGTAGGTTTCGGTTTCGAGTTAAGAAATTCAACATCACAAATAAGGAAGAAGAAAACACGCAGCCAGACAAACTATGTCACGGTATGTGTCAAGAACATGTGAAGTTAGTTAGAAGAAGCGAGAACGGCATGAGTGTACGTCAGATGATGATGATGTTTTGGAGTGCGTGGCAGTTTGGCTTGAGATGATGATGGCGAGAAGGAAACGGCATGTGTGTGTGTGTGGGCCAAGAGCAATCGAAATATGATAGTGGGAGCGATGTGCAAGGCAGAGGACACCTACATAATACTTTCCGTTGGGCGAATCCTAAAAGAAAACATGGGAAAGATATTAATCAATTG] consensusID : consensus_3302#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence [CCGCACAAATAAGGAAGAAGAAAACACGCAGCCAGACAAACTATGTCACGGTATGTGTCAAGAACATGTGAAGTTAGTTAGAAGAAGCGAGAACGGCATGAGTGTACGTCAGATGATGATGATGTTTTGGAGTGCGTGGCAGGTTAGTTGATTATAGTTTCCTTTAGCACTTCTCATTAGTTGATAGTTTAATTTGTGAACGGTTCTTTTAAGAGCCGGCGTAATTTTACTTTATCGAAAAAGGATACTGCTTAACGCTACATGTAAGATAGCATGTTTTGTATATATACAAAAGAAAAGGAAAACTATTTTTATCGCACATAAAGCTAGAGGATCATTTTATCCGCGTGTTCAGTTGCCTGTTTTGGAGCAAAGTTTATTTATCGTTTCACATGTGATCGGTATGTGTATCACGAACGATACGGAGGGGGTTTATGGTTAGATCGCACTCAGGCAGGGTCTGGTGCTGTTTGCCGATTTTTTTTTTATTCTACAGAATTTTCTCTAGAGAGACTGCAATAAGGCTTACAAACTAGAAAGATAGAACGGGCAATGGGGAGGAGCAGCGAAGCTGTAACCTAACGCATTGCCCTAGCGAAACCGCAAGAACCGACCACTTGGCTGTCGTGCTTGCGTAACGTTGTGGTACGAATTGTTGCTACATTTAAATATCTGATTTACT] [+] EMBL BM624941 [CCGCACAAATAAGGAAGAAGAAAACACGCAGCCAGACAAACTATGTCACGGTATGTGTCAAGAACATGTGAAGTTAGTTAGAAGAAGCGAGAACGGCATGAGTGTACGTCAGATGATGATGATGTTTTGGAGTGCGTGGCAGGTTAGTTGATTATAGTTTCCTTTAGCACTTCTCATTAGTTGATAGTTTAATTTGTGAACGGTTCTTTTAAGAGCCGGCGTAATTTTACTTTATCGAAAAAGGATACTGCTTAACGCTACATGTAAGATAGCATGTTTTGTATATATACAAAAGAAAAGGAAAACTATTTTTATCGCACATAAAGCTAGAGGATCATTTTATCCGCGTGTTCAGTTGCCTGTTTTGGAGCAAAGTTTATTTATCGTTTCACATGTGATCGGTATGTGTATCACGAACGATACGGAGGGGGTTTATGGTTAGATCGCACTCAGGCAGGGTCTGGTGCTGTTTGCCGATTTTTTTTTTATTCTACAGAATTTTCTCTAGAGAGACTGCAATAAGGCTTACAAACTAGAAAGATAGAACGGGCAATGGGGAGGAGCAGCGAAGCTGTAACCTAACGCATTGCCCTAGCGAAACCGCAAGAACCGACCACTTGGCTGTCGTGCTTGCGTAACGTTGTGGTACGAATTGTTGCTACATTTAAATATCTGATTTACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3302#0 TTGTCACCAAACATCGAGGATATTTGCTGCAAACACTCGGTGACAAGGAAGTGCATGACT 60 consensus_3302#1 ------------------------------------------------------------ consensus_3302#0 GGTTGTATGCAATCAATCCCCTGCTGGCCGGGCAAATTAGGTCTCGATTGGCCAGGAAAA 120 consensus_3302#1 ------------------CCGCACAAATAAGGAAGAAGAAAACACG--CAGCCAGACAAA 40 ** * ** * * * * ** ***** *** consensus_3302#0 ACATTTCCAGCATAAGCAGCACTGGAAGTGGTGCAGGCGATCAGCAACAGGCGACGACGG 180 consensus_3302#1 CTATGTCACG-GTATGTGTCA--AGAACATGTGAAGTTAGTTAG-AAGAAGCGAGAACGG 96 ** ** * ** * ** *** *** ** * ** ** * **** **** consensus_3302#0 GA-GCGTCCGCACTGGCTGTAGCGGCCGCCCAGGGCAACGGAGGTGGCAGCAGTTCTGGA 239 consensus_3302#1 CATGAGTGTACGTCAGATGATGATGATGTTTTGGA----GTGCGTGGCAG----GTTAGT 148 * * ** * * ** * * * ** * ******* * * consensus_3302#0 GGCAAATGAGATACAATAACGATGGAGTCCGTTCTAGTATACTAAACTACTGCGCAACGG 299 consensus_3302#1 TGATTATAGTTTCCTTTAGC-----ACTTCTCATTAGT-TGATAGTTTAATTTGTGAACG 202 * ** * * ** * * * * **** * ** ** * * * * consensus_3302#0 CTACTCCTATACTGTCGCAGAATGTAGAGCGACCATAAACCATTACCACCATTATTCCTA 359 consensus_3302#1 GTTCTTTTAAGAGCCGGCGTAATTTTACTTTATCGAAAAAGGATACTGC--TTAACGCTA 260 * ** ** ** *** * * * *** *** * *** *** consensus_3302#0 GAAAGGATGATCCAAGTTTGACGTG-ATGCAATCGCCACCACCAAGAAAACCAAAATCAA 418 consensus_3302#1 CATGTAAGATAGCATGTTTTGTATATATACAAAAGAAA-----AGGAAAACTATTTTTAT 315 * * ** **** * ** *** * * * ****** * * * consensus_3302#0 ACCAAAATAATTAGTAGTACTCGTTGTCGTTAACTCCTCCTCCCTCCTTCCCTCTCTCCA 478 consensus_3302#1 CGCACATAAAGCTAGAGGA-TCATT----TTATCCGCGTGTTCAGTTGCCTGTTTTGGAG 370 ** * ** ** * ** ** *** * * * * * * * consensus_3302#0 CTTAGTTGTGTTGGTAGGTTTCGGTTTCGAGTTAAGAAATTCAACATCACAAATAAGGAA 538 consensus_3302#1 CAAAGTT-TATTTATCG-TTTCACATGTGA-TCGGTATGT---GTATCACGAACGAT-AC 423 * **** * ** * * **** * ** * * * ***** ** * * consensus_3302#0 GAAGAAAACACGCAGCCAGA-CAAACTATGTCACGGTATGTGTCAAGAACATGTGAAGTT 597 consensus_3302#1 GGAGGGGGTTTATGGTTAGATCGCACTCAGGCAGGGTCTG-GTGCTGTTTGC-CGATTTT 481 * ** * *** * *** * ** *** ** ** * ** ** consensus_3302#0 AGTTAGAAGAAGCGAGAACGGCATGAGTGTACGTCAGATGATGATGATGTTTTGGAGTGC 657 consensus_3302#1 TTTTTTATTCTACAGAATTTTCTCTAGAG------AGACTGCAATAAGGCTTACAAAC-- 533 ** * * * * ** * *** ** * * ** * consensus_3302#0 GTGGCAGTTTGGCTTGAGATGATGATGGCGAGAAGGAAACGGCATGTGTGTGTGTGTGGG 717 consensus_3302#1 -TAGAAAGATAGAACG-GGCAATGGGGAGGAGCAGCGAA-GCTGTAACCTAACGCATTGC 590 * * * * * * * *** * *** ** ** * * * * * consensus_3302#0 CCAAGAGCAATCGAAATATGATAGTGGGAGCGATGTGCAAGGCAGAGGACACCTACATAA 777 consensus_3302#1 CCTAGCGAAACCGCAA----------GAACCGAC-CACTTGGCTGTCG-TGCTTGCGTAA 638 ** ** * ** ** ** * * *** * *** * * * * * *** consensus_3302#0 TACTTTCCGTTGGGCGAATCCTAAAAGAAAACATGGGAAAGATATTAATCAATTG 832 consensus_3302#1 CGTTGTGGTACGAATTGTTGCTACATTTAAATATCTGATTTACT----------- 682 * * * * *** * *** ** ** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||