These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3323#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 780 fasta sequence [AAACAATAATTTCTTGAAAGTAAACAAAACCTAAAAACCATAAATTCCCAATACTCTATAACTAAACCGTTGGTAACGTGAGTGAGCAAAACAGAGCACAGAGCGAAAAGCGTGGTTTGAGCGAAAAAGTGAAGAAACGTTTCAAAACACAACCAACACTTTTTTCAATCTAACCGCGTTTTGAACCGCCGAAATTGAACTAAAAATGCCGCAAAAAAAATAAAACTAAACTTTCAAATACTACTTCCACTAT-AAGACACACACAC----ACACAAGCAAAGTAGCACACAGGCAAAACATACGCACACCACACAATCACAGCCGGATCGTAGTTGAAAACTAAAGAAGAGAGAGACAAGACAAAAGGAGATGAATGTGGAAAG-AAAAAGCAACAACACAGAACAGACACACTGACACACACTCTCAG-AAAAAACACAAACTTACAAAACAATGGTAGGATTTGTCATGCAAAGCAGATAAAAGTCTCAAAACAACTCCCAACAGTACGGTAATCACAGGCGCGCAACCGCAATTGCTAGCAAATAAAACCTAAAATGAGCACACAAACACACAAACATACT--ACACACACGCATACACACACACACACACTGACAGAGGAGGAAAGGCACTGGGTGCGTGTGTGAGTGGGTGTGGATGTGGTTTGGTGTGAGTGTGCAGTAAAGCAAAAAAAACACGAGAAGTTAAACATTGTGAAGCTCGGAACTCTCTCTACTGTAAAAGTATTATTTTACTAGTTTATTTTGTTTTTTGGATGAAAAAATT] [+] EMBL BX616895 [AAACAATAATTTCTTGAAAGTAAACAAAACCTAAAAACCATAAATTCCCAATACTCTATAACTAAACCGTTGGTAACGTGAGTGAGCAAAACAGAGCACAGAGCGAAAAGCGTGGTTTGAGCGAAAAAGTGAAGAAACGTTTCAAAACACAACCAACACTTTTTTCAATCTAACCGCGTTTTGAACCGCCGAAATTGAACTAAAAATGCCGCAAAAAAAATAAAACTAAACTTTCAAATACTACTTCCACTAT AAGACACACACAC ACACAAGCAAAGTAGCACACAGGCAAAACATACGCACACCACACAATCACAGCCGGATCGTAGTTGAAAACTAAAGAAGAGAGAGACAAGACAAAAGGAGATGAATGTGGAAAG AAAAAGCAACAACACAGAACAGACACACTGACACACACTCTCAG AAAAAACACAAACTTACAAAACAATGGTAGGATTTGTCATGCAAAGCAGATAAAAGTCTCAAAACAACTCCCAACAGTACGGTAATCACAGGCGCGCAACCGCAATTGCTAGCAAATAAAACCTAAAATGAGCACACAAACACACAAACATACT ACACACACGCATACACACACACACACACTGACAGAGGAGGAAAGGCACTGGGTGCGTGTGTGAGTGGGTGTGGATGTGGTTTGGTGTGAGTGTGCAGTAAAGCAAAAAAAACACGAGAAGTTAAACATTGTGAAGCTCGGAACTCTCTCTACTGTAAAAG ] [+] EMBL BM624181 [ ccgTAAACTTTCAAATACTACTTCCACTATAAAGACACACACACACAGACACAAGCAAAGTAGCACACAGGCAAAACATACGCACGCCGCACAATCACAGCCGGATCGTAGTTGTTAACTAAAGAAGAGAGAGACAAGACAAAAGGAGATGAATGTGGAAAGAAAAAAGCAACAACACAGAACAAACACACTGACACACACACTCAGAAAAAAACGCAAACTTACAAAACAATGGTAGGATTTGTCATGCAAAGCAGATAAAAGTCTCAAAACAACTCCCAACAGTACGGTAATCACAGGCGCGCAACCGCAATTGCTAGCAAATAAAACCTAAAATGAGCACACAAACACACAAACATACTACACACACACGCATACACACACACACACACTGACAGAGGAGGAAAGGCACTGGGTGCGTGTGTGAGTGGGTGTGGATGTGGTTTGGTGTGAGTGTGCAGTAAAGCAAACAAAACACGAGAAGTTAAACATTGTGAAGCTCGGAACTCTCTCTACTGTAAAAGTATTATTTTACTAGTTTATTTTGTTTTTTGGATGAAAAAATT] consensusID : consensus_3323#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 434 fasta sequence [TCCCGTCGTTCCAATGTGGAGGTTTTGTTGTTGCGCTTGCTGCTCTTTTTCGCGCGTTCGCGTCCAATCTTCTCCGCTTGGCGGACCCAGCCGCCGGACACAGGATGAAGTGTGCTGTTTTATTGGAATGGTCACCGTTTGGTGGGGCCCCTTGCAGGCCATCTTAATCGGTGTGCACCCTAGAAAAAACACACAAACATACTACACACACGCATACACACACACACACACTGACAGAGGAGGAAAGGCACTGGGTGCGTGTGTGAGTGGGTGTGGATGTGGTTTGGTGTGAGTGTGCAGTAAAGCAAAAAAAACACGAGAAGTTAAACATTGTGAAGCTCGGAACTCTCTCTACTGTAAAAGTATTATTTTACTAGTTTATTTTGTTTTTTGGATGAAAAAATTCTAATAAAAGTGACGTTAATATAAAACAA] [+] EMBL BX613416 [TCCCGTCGTTCCAATGTGGAGGTTTTGTTGTTGCGCTTGCTGCTCTTTTTCGCGCGTTCGCGTCCAATCTTCTCCGCTTGGCGGACCCAGCCGCCGGACACAGGATGAAGTGTGCTGTTTTATTGGAATGGTCACCGTTTGGTGGGGCCCCTTGCAGGCCATCTTAATCGGTGTGCACCCTAGAAAAAACACACAAACATACTACACACACGCATACACACACACACACACTGACAGAGGAGGAAAGGCACTGGGTGCGTGTGTGAGTGGGTGTGGATGTGGTTTGGTGTGAGTGTGCAGTAAAGCAAAAAAAACACGAGAAGTTAAACATTGTGAAGCTCGGAACTCTCTCTACTGTAAAAGTATTATTTTACTAGTTTATTTTGTTTTTTGGATGAAAAAATTCTAATAAAAGTGACGTTAATATAAAACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3323#0 AAACAATAATTTCTTGAAAGTAAACAAAACCTAAAAACCATAAATTCCCAATACTCTATA 60 consensus_3323#1 ------------------------------------------------------------ consensus_3323#0 ACTAAACCGTTGGTAACGTGAGTGAGCAAAACAGAGCACAGAGCGAAAAGCGTGGTTTGA 120 consensus_3323#1 ------------------------------------------------------------ consensus_3323#0 GCGAAAAAGTGAAGAAACGTTTCAAAACACAACCAACACTTTTTTCAATCTAACCGCGTT 180 consensus_3323#1 ------------------------------------------------------------ consensus_3323#0 TTGAACCGCCGAAATTGAACTAAAAATGCCGCAAAAAAAATAAAACTAAACTTTCAAATA 240 consensus_3323#1 ------------------------------------------------------------ consensus_3323#0 CTACTTCCACTATAAGACACACACACACACAAGCAAAGTAGCACACAGGCAAAACATACG 300 consensus_3323#1 ------------------------------------------------------------ consensus_3323#0 CACACCACACAATCACAGCCGGATCGTAGTTGAAAACTAAAGAAGAGAGAGACAAGACAA 360 consensus_3323#1 ---------------------------------------------------------TCC 3 consensus_3323#0 AAGGAGATGAATGTGGAAAGAAAAAGCAACAACACAGAACAGACACACTGACACACACTC 420 consensus_3323#1 CGTCGTTCCAATGTGGA--GGTTTTGTTGTTGCGCTTGCTGCTCTTTTTCGCGCGTTCGC 61 ******** * * * * * * * * * * consensus_3323#0 TCAGAAAAAACACAAACTTACAAAAC-AATGGTAGGATTTGTCATGCAAAGCAGATAAAA 479 consensus_3323#1 GTCCAATCTTCTCCGCTTGGCGGACCCAGCCGCCGGACACAGGATG--AAGTGTGCTGTT 119 ** * * * * * * * * *** *** *** consensus_3323#0 GTCTCAAAACAACTCCCAACAGTACGGTAATCACAGGCGCGCAACCGCAATTGCTAGCAA 539 consensus_3323#1 TTATTGGAATGGTCACCGTT--TGGTGGGGCCCCTTGCAGGCCATCTTAATCGGTG---- 173 * * ** ** * * * * ** ** * * *** * * consensus_3323#0 ATAAAACCTAAAATGAGCACACAAACACACAAACATACTACACACACGCATACACACACA 599 consensus_3323#1 -TGCACCCTAGAAA--------AAACACACAAACATACTACACACACGCATACACACACA 224 * * **** ** ************************************** consensus_3323#0 CACACACTGACAGAGGAGGAAAGGCACTGGGTGCGTGTGTGAGTGGGTGTGGATGTGGTT 659 consensus_3323#1 CACACACTGACAGAGGAGGAAAGGCACTGGGTGCGTGTGTGAGTGGGTGTGGATGTGGTT 284 ************************************************************ consensus_3323#0 TGGTGTGAGTGTGCAGTAAAGCAAAAAAAACACGAGAAGTTAAACATTGTGAAGCTCGGA 719 consensus_3323#1 TGGTGTGAGTGTGCAGTAAAGCAAAAAAAACACGAGAAGTTAAACATTGTGAAGCTCGGA 344 ************************************************************ consensus_3323#0 ACTCTCTCTACTGTAAAAGTATTATTTTACTAGTTTATTTTGTTTTTTGGATGAAAAAAT 779 consensus_3323#1 ACTCTCTCTACTGTAAAAGTATTATTTTACTAGTTTATTTTGTTTTTTGGATGAAAAAAT 404 ************************************************************ consensus_3323#0 T----------------------------- 780 consensus_3323#1 TCTAATAAAAGTGACGTTAATATAAAACAA 434 * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||