These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3326#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 820 fasta sequence [GAAATCCATTTTCTTTTGACTGATCGGATTCCAGGGTGTGCGTAAGTGTGTGTGTTCGTGTGCGTCCCGCGTTCTGTTTTCTCCACTGAATCGTAACCGCGTGTGTGTGTGTTCCGCCTATGTGTTTTGCCTTATTATTACAACTCCCCCCCCCTCCTCTTGCGCGATCGCGTGGTGCTCGTGAAAATGAAATGACAAATCGTCCTCGAAGTTTCGTCGCTATGTTTATTAATCATAATTTTTATGCGCTCATTTCTACCTTTACAACTATTCTCCTCTCTCGATGTTGTGTGATCGGACAAGTTTTGGGCGAATGCGTTCGCTTTTGTTTCAATTGGCGCTTTAGTATTGTATTATTGTATATATATACCTTTGTAAACCAAACTCATACGATATTCTCCAACTATTATTTGATTATTAACACGCAAATGCTAATCGCACGCCGTCGTTGTTTGTGAACCGTTATGATTTCGATACCTATTAACAACGCAAGCTGCCACCGCGCGTGAAGCG-TTTTCTAATGCTGTCGTGAACTCCTCCTTA-TTTGTGGAGCGACGATCGCCTCTATTACTCATGAAACTAACCTACTTTTTTGATATTCATTTGATACTAGTGTTATGTTACAACT--TTTTTTT-TATATGTATGCGCTTATTTCACTACCAAAATACCACAACCCACCCGTTGTTCCCGTTTTCCCCCAAACGCGCGAGATATCCCACGTTCTCACTGTCACGGTGAGCAGTGCGACGACCCCGTTATTCCTACGTTTTCAACGCATATATACAGATTTTACCTTTTTTATACCAAGCCAAAAAAAAAA] [+] EMBL BX626001 [GAAATCCATTTTCTTTTGACTGATCGGATTCCAGGGTGTGCGTAAGTGTGTGTGTTCGTGTGCGTCCCGCGTTCTGTTTTCTCCACTGAATCGTAACCGCGTGTGTGTGTGTTCCGCCTATGTGTTTTGCCTTATTATTACAACTCCCCCCCCCTCCTCTTGCGCGATCGCGTGGTGCTCGTGAAAATGAAATGACAAATCGTCCTCGAAGTTTCGTCGCTATGTTTATTAATCATAATTTTTATGCGCTCATTTCTACCTTTACAACTATTCTCCTCTCTCGATGTTGTGTGATCGGACAAGTTTTGGGCGAATGCGTTCGCTTTTGTTTCAATTGGCGCTTTAGTATTGTATTATTGTATATATATACCTTTGTAAACCAAACTCATACGATATTCTCCAACTATTATTTGATTATTAACACGCAAATGCTAATCGCACGCCGTCGTTGTTTGTGAACCGTTATGATTTCGATACCTATTAACAACGCAAGCTGCCACCGCGCGTGAAGCG TTTTCTAATGCTGTCGTGAACTCCTCCTTA TTTGTGGAGCGACGATCGCCTCTATTACTCATGAAACTAACCTACTTTTTTGATATTCATTTGATACTAGTGTTATGTTACAACT TTTTTTT TATATGTATGCGCTTATTTCACTACCAAAATACCACAACCCACCCGTTGTTCCCGTTTTCCCCCAAACGCGCGAGATATCCCACGTTCTCACTGTCACGGTGAGCAGTGCGACGACCCCGTTATTCCTACGTTTTCAACGCATATATACAGATTTTACCTTTTTTATA ] [+] EMBL CF541565 [ CGTTACCGATTAACAACGCAAGCTGCCCCCGCGCGTGAAGCGTTTTTCTAAAGCTGTCGTG ACTCCTCCTTATTTTGTGAAGCGACGATCGCCTCTATTACTCATGAAACTAACCTACTTTTTTGATATTCCTTTGATACTAGTGTTATGTTACAACTTATTTTTTTATATATGTATGCGCTTATTTCACTACCAAAATACCACAACCCACCCGTTGTTCCCGTTTTCCCCCAAACGCGCGAGATATCCCACGTTCTCACTGTTACGGTGAGCAGTGCGACGACCCCGTTATTCCTACGTTTTCAACGCATATATACAGATTTTACCTTTTTTATACCAAGCCAAAAAAAAAA] consensusID : consensus_3326#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 706 fasta sequence [CCGCCCACGCGTCCGGATTCCAGGGTGTGCGTAAGTGTGTGTGTTCGTGTGCGTCCCGCGTTCTGTTTTCTCCACTGAATCGTAACCGCGTGTGTGTGTGTGTTCCGCCTATGTGTTTTGACTTATTATTACAACTCCCCCCCCCCCCCCTCCTCCTCTTGCGCGATCGCGTGGTGCTCGTGAAAATGAAATGACAAATCGTCCTCGAAGTTTCGTCGCTATGTTTATTAATCATAATTTTTATGCGCTCATTTCTACCTTTACAACTATTCTCCTCTCTCGATGTTGTGTGATCGGACAAGTTTTGGGCGAATGCGTTCGCTTTTGTTTCAATTGGCGCTTTAGTATTGTATTATTGTATATATATATATATATCTATGTAAACCAAACTCACACGATATTCTCCAACTATTATTTGATTATTAACACGCAAATGCTAATCGCACGCCGTCGTTGTTTGTGAACCGTTATGATTTCGTTACCGATTAACAACGCAAGCTGCCCCCGCGCGTGAAGCGTTTTTCTAAAGCTGTCGTGACTCCTCCTTATTTTGTGAAGCGACGATCGCCTCTATTACTCATGAAACTAACCTACTTTTTTGATATTCCTTTGATACTAGTGTTATGTTACAACTTATTTTTTTTATATGTATGCGCTTATTTCACTACCAAAATACCACAACCCCCCCCGTTGTTCCCCGGTTTCC] [+] EMBL BM617977 [CCGCCCACGCGTCCGGATTCCAGGGTGTGCGTAAGTGTGTGTGTTCGTGTGCGTCCCGCGTTCTGTTTTCTCCACTGAATCGTAACCGCGTGTGTGTGTGTGTTCCGCCTATGTGTTTTGACTTATTATTACAACTCCCCCCCCCCCCCCTCCTCCTCTTGCGCGATCGCGTGGTGCTCGTGAAAATGAAATGACAAATCGTCCTCGAAGTTTCGTCGCTATGTTTATTAATCATAATTTTTATGCGCTCATTTCTACCTTTACAACTATTCTCCTCTCTCGATGTTGTGTGATCGGACAAGTTTTGGGCGAATGCGTTCGCTTTTGTTTCAATTGGCGCTTTAGTATTGTATTATTGTATATATATATATATATCTATGTAAACCAAACTCACACGATATTCTCCAACTATTATTTGATTATTAACACGCAAATGCTAATCGCACGCCGTCGTTGTTTGTGAACCGTTATGATTTCGTTACCGATTAACAACGCAAGCTGCCCCCGCGCGTGAAGCGTTTTTCTAAAGCTGTCGTGACTCCTCCTTATTTTGTGAAGCGACGATCGCCTCTATTACTCATGAAACTAACCTACTTTTTTGATATTCCTTTGATACTAGTGTTATGTTACAACTTATTTTTTTTATATGTATGCGCTTATTTCACTACCAAAATACCACAACCCCCCCCGTTGTTCCCCGGTTTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3326#0 GAAATCCATTTTCTTTTGACTGATCGGATTCCAGGGTGTGCGTAAGTGTGTGTGTTCGTG 60 consensus_3326#1 -----------CCGCCCACGCGTCCGGATTCCAGGGTGTGCGTAAGTGTGTGTGTTCGTG 49 * * ************************************ consensus_3326#0 TGCGTCCCGCGTTCTGTTTTCTCCACTGAATCGTAACCGCGTGTGTGTGTGT--TCCGCC 118 consensus_3326#1 TGCGTCCCGCGTTCTGTTTTCTCCACTGAATCGTAACCGCGTGTGTGTGTGTGTTCCGCC 109 **************************************************** ****** consensus_3326#0 TATGTGTTTTGCCTTATTATTACAACTCCCCCCCCC--------TCCTCTTGCGCGATCG 170 consensus_3326#1 TATGTGTTTTGACTTATTATTACAACTCCCCCCCCCCCCCCTCCTCCTCTTGCGCGATCG 169 *********** ************************ **************** consensus_3326#0 CGTGGTGCTCGTGAAAATGAAATGACAAATCGTCCTCGAAGTTTCGTCGCTATGTTTATT 230 consensus_3326#1 CGTGGTGCTCGTGAAAATGAAATGACAAATCGTCCTCGAAGTTTCGTCGCTATGTTTATT 229 ************************************************************ consensus_3326#0 AATCATAATTTTTATGCGCTCATTTCTACCTTTACAACTATTCTCCTCTCTCGATGTTGT 290 consensus_3326#1 AATCATAATTTTTATGCGCTCATTTCTACCTTTACAACTATTCTCCTCTCTCGATGTTGT 289 ************************************************************ consensus_3326#0 GTGATCGGACAAGTTTTGGGCGAATGCGTTCGCTTTTGTTTCAATTGGCGCTTTAGTATT 350 consensus_3326#1 GTGATCGGACAAGTTTTGGGCGAATGCGTTCGCTTTTGTTTCAATTGGCGCTTTAGTATT 349 ************************************************************ consensus_3326#0 GTATTATTGTATATATATAC------CTTTGTAAACCAAACTCATACGATATTCTCCAAC 404 consensus_3326#1 GTATTATTGTATATATATATATATATCTATGTAAACCAAACTCACACGATATTCTCCAAC 409 ******************* ** *************** *************** consensus_3326#0 TATTATTTGATTATTAACACGCAAATGCTAATCGCACGCCGTCGTTGTTTGTGAACCGTT 464 consensus_3326#1 TATTATTTGATTATTAACACGCAAATGCTAATCGCACGCCGTCGTTGTTTGTGAACCGTT 469 ************************************************************ consensus_3326#0 ATGATTTCGATACCTATTAACAACGCAAGCTGCCACCGCGCGTGAAGCGTTTT-CTAATG 523 consensus_3326#1 ATGATTTCGTTACCGATTAACAACGCAAGCTGCCCCCGCGCGTGAAGCGTTTTTCTAAAG 529 ********* **** ******************* ****************** **** * consensus_3326#0 CTGTCGTGAACTCCTCCTTATTT-GTGGAGCGACGATCGCCTCTATTACTCATGAAACTA 582 consensus_3326#1 CTGTCGTGA-CTCCTCCTTATTTTGTGAAGCGACGATCGCCTCTATTACTCATGAAACTA 588 ********* ************* *** ******************************** consensus_3326#0 ACCTACTTTTTTGATATTCATTTGATACTAGTGTTATGTTACAACTT--TTTTTTTATAT 640 consensus_3326#1 ACCTACTTTTTTGATATTCCTTTGATACTAGTGTTATGTTACAACTTATTTTTTTTATAT 648 ******************* *************************** *********** consensus_3326#0 GTATGCGCTTATTTCACTACCAAAATACCACAACCCACCC-GTTGTTCCCGTTTTCCCCC 699 consensus_3326#1 GTATGCGCTTATTTCACTACCAAAATACCACAACCCCCCCCGTTGTTCCCCGGTTTCC-- 706 ************************************ *** ********* ** ** consensus_3326#0 AAACGCGCGAGATATCCCACGTTCTCACTGTCACGGTGAGCAGTGCGACGACCCCGTTAT 759 consensus_3326#1 ------------------------------------------------------------ consensus_3326#0 TCCTACGTTTTCAACGCATATATACAGATTTTACCTTTTTTATACCAAGCCAAAAAAAAA 819 consensus_3326#1 ------------------------------------------------------------ consensus_3326#0 A 820 consensus_3326#1 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||