These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3329#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 724 fasta sequence [CCCGAGGTTTACTGGTGGATGAGGAGCAGGAGGAGAGCGAGTACGACGAAGCCATCCTCGAGTCGGCTGGTGACATTTTGCCCAAGTTTGGCCGTGCCCTGCCGGCGGAAGAGTTTGCCGTTTACTTTGGACGCGTGTGGCCATACTTTATTCAACACAAACTTGAACAAAACCAAGCAAAACGGATGAAACGAGCGACTCGCAGCGTGCCTTTGCGATCGGCGTGCTGGCGGAACTGCTTTGAACGGTTCTGAACGGAATTCAACCGCAAACTGGATCGACACGCTGCCTGCCCCATCTTCTCTGTCGCCTGCGGCTACAGAGAACCGCAACAACGAGGCTACGCACGCCAACCACCGGCATGCTACGGACTGGCGCAGCAGCACTGCGCTGAACGCACTGCGCACAACGGACTTGCCACTCTCTCCGCGATCACTACTCCGCCAAACTNACTGCGCACGCACCTCTCCCAGCCTCGTACTCCAAAACGCAACAGCATGCCGGCCACACTGGCACAACCCTGCTGCGGAGCCCCCTGCGGCCACGACTCACTTTACTTACCCCAAACCTGCCAGCTNTNTGAGGCATGNCCCGGCCCTGCACACACACGCTGCTNTCCTCCCCCGCGGACTGCATACTCTGCTGCNGNAGCTAATTCTTTCCCAACTCTGGGCCGCTTGCANACGGCAACTTATACTAACCCCCGNACANAAACTCTCTGGGG] [+] EMBL AL695589 [CCCGAGGTTTACTGGTGGATGAGGAGCAGGAGGAGAGCGAGTACGACGAAGCCATCCTCGAGTCGGCTGGTGACATTTTGCCCAAGTTTGGCCGTGCCCTGCCGGCGGAAGAGTTTGCCGTTTACTTTGGACGCGTGTGGCCATACTTTATTCAACACAAACTTGAACAAAACCAAGCAAAACGGATGAAACGAGCGACTCGCAGCGTGCCTTTGCGATCGGCGTGCTGGCGGAACTGCTTTGAACGGTTCTGAACGGAATTCAACCGCAAACTGGATCGACACGCTGCCTGCCCCATCTTCTCTGTCGCCTGCGGCTACAGAGAACCGCAACAACGAGGCTACGCACGCCAACCACCGGCATGCTACGGACTGGCGCAGCAGCACTGCGCTGAACGCACTGCGCACAACGGACTTGCCACTCTCTCCGCGATCACTACTCCGCCAAACTNACTGCGCACGCACCTCTCCCAGCCTCGTACTCCAAAACGCAACAGCATGCCGGCCACACTGGCACAACCCTGCTGCGGAGCCCCCTGCGGCCACGACTCACTTTACTTACCCCAAACCTGCCAGCTNTNTGAGGCATGNCCCGGCCCTGCACACACACGCTGCTNTCCTCCCCCGCGGACTGCATACTCTGCTGCNGNAGCTAATTCTTTCCCAACTCTGGGCCGCTTGCANACGGCAACTTATACTAACCCCCGNACANAAACTCTCTGGGG] consensusID : consensus_3329#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 723 fasta sequence [ATGAAACGAGCGACTCGCAGCGTGCCTTTGCGATCGGCGTGCTGGCGGAATGCTTTGAAGGTTTGAAGGAATTCAACCGCAACTGGATCGACACGCTGCTGCCCATCTTTCTGTCGTGCGTACAGGACCGCAACAACGAGGTACGCAGCAACACGGTGTACGGACTGGGAGAGATGGTGAAGCATGGAAAGGATTGCACTTTCGGTCACTATCCGCAAATTATGGCAGCACTCTCCCGGCTCGTATCCAAAGAACAGCATGCCGGCACACTGGACAACCTGTGCGGAGCCCTGGCACGACTCATTATTACCAACTGCAGTTTGGTGCCGCTGAAAAGTGTTCTCCCGGTGTTTGTGGAGTATCTTCCATTGCGTGAAGATTTTACCGAAAATTTGGCCGTGTTCCAGTGCCTTGATTTGCTGTACAAGCAGGGCGACGAGAACCTAATACCGGCGCTGTGCCGCATTCTGGTGGTTGGTTTGCAGGTGCTTTGCAAGAAGGAGTATGGCACTGAAGAATGCCGCGAACTGGTGCACAATCTGGTGAAACAGATCAGCAAAGACTNCCCGGACAAGTTCGCCGAGGTGATCCGCAGCAGCGCCGAGGCTGCCGAGTTTGTGCAANCGCTTTCGCTGCAGTAGANNTTAGCGAAGCCGCATTNCATGCGCAANCTGTNTGTCACGTACATNANTCATATCTCNGCATAATACATGCATGAAACGG] [+] EMBL CF541661 [ATGAAACGAGCGACTCGCAGCGTGCCTTTGCGATCGGCGTGCTGGCGGAATGCTTTGAAGGTTTGAAGGAATTCAACCGCAACTGGATCGACACGCTGCTGCCCATCTTTCTGTCGTGCGTACAGGACCGCAACAACGAGGTACGCAGCAACACGGTGTACGGACTGGGAGAGATGGTGAAGCATGGAAAGGATTGCACTTTCGGTCACTATCCGCAAATTATGGCAGCACTCTCCCGGCTCGTATCCAAAGAACAGCATGCCGGCACACTGGACAACCTGTGCGGAGCCCTGGCACGACTCATTATTACCAACTGCAGTTTGGTGCCGCTGAAAAGTGTTCTCCCGGTGTTTGTGGAGTATCTTCCATTGCGTGAAGATTTTACCGAAAATTTGGCCGTGTTCCAGTGCCTTGATTTGCTGTACAAGCAGGGCGACGAGAACCTAATACCGGCGCTGTGCCGCATTCTGGTGGTTGGTTTGCAGGTGCTTTGCAAGAAGGAGTATGGCACTGAAGAATGCCGCGAACTGGTGCACAATCTGGTGAAACAGATCAGCAAAGACTNCCCGGACAAGTTCGCCGAGGTGATCCGCAGCAGCGCCGAGGCTGCCGAGTTTGTGCAANCGCTTTCGCTGCAGTAGANNTTAGCGAAGCCGCATTNCATGCGCAANCTGTNTGTCACGTACATNANTCATATCTCNGCATAATACATGCATGAAACGG] consensusID : consensus_3329#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 646 fasta sequence [CCGGGAAGATATCGCCGGGTATAGCATCGAAAATGCGTACATGGACGAAAAGGAGGAAGCGATTCTGGCGCTGATGGAGTTTGCCGAGCATACGGGGCCCGCCTTTGCACCGTTCATACAGACGGCGTTTGAGGAAATCTACAAACTGTTGAACCACCCGAACGAGGACATTCGGAAGGCGTCGATCGACGCGGTCAAACAGTTTGTGGTGGCACTGCACCAGCTGGGCAACATGGAGGGTGTCCACCAGACGATCCTGATTCTGGTGCCGAAGCTGAGCGAAATCATCCGTACGGACGAGGAGCGCACGGTCGTCATGTCGGCGCTGGATGGGTTCAGCGACATACTGCAGGAGGTCGGTGCGGCCACGTTCCAGGCCGACGGGCAGAAGGACGCCGTGTTTAATTGCATTGTGGACGTGCTGAATGGAAAGGTTGCCTGCCAGTTCGATGAGCCGGTGGATGAGGAGCAGGAGGAGAGCGAGTACGACGAAGCCATCCTCGAGTCGGCTGGTGACATTTTGCCCAAGTTTGGCCGTGCCCTGCCGGCGGAAGAGTTTGCCGTTTACTTTGGACGCGTGTGGCCATACTTTATTCAAAAAATTGAAAAAACCAAGCAAAAAGGATGAAACGAGCGACTCGCAGCG] [+] EMBL BM636089 [CCGGGAAGATATCGCCGGGTATAGCATCGAAAATGCGTACATGGACGAAAAGGAGGAAGCGATTCTGGCGCTGATGGAGTTTGCCGAGCATACGGGGCCCGCCTTTGCACCGTTCATACAGACGGCGTTTGAGGAAATCTACAAACTGTTGAACCACCCGAACGAGGACATTCGGAAGGCGTCGATCGACGCGGTCAAACAGTTTGTGGTGGCACTGCACCAGCTGGGCAACATGGAGGGTGTCCACCAGACGATCCTGATTCTGGTGCCGAAGCTGAGCGAAATCATCCGTACGGACGAGGAGCGCACGGTCGTCATGTCGGCGCTGGATGGGTTCAGCGACATACTGCAGGAGGTCGGTGCGGCCACGTTCCAGGCCGACGGGCAGAAGGACGCCGTGTTTAATTGCATTGTGGACGTGCTGAATGGAAAGGTTGCCTGCCAGTTCGATGAGCCGGTGGATGAGGAGCAGGAGGAGAGCGAGTACGACGAAGCCATCCTCGAGTCGGCTGGTGACATTTTGCCCAAGTTTGGCCGTGCCCTGCCGGCGGAAGAGTTTGCCGTTTACTTTGGACGCGTGTGGCCATACTTTATTCAAAAAATTGAAAAAACCAAGCAAAAAGGATGAAACGAGCGACTCGCAGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3329#0 CCCGAGGTTTACTGGTGGATGAGGAGCAGGAG---GAGAGCGAGTACGACGAAGCCATCC 57 consensus_3329#1 ------ATGAAACGAGCGACTCGCAGCGTGCCTTTGCGATCG-GCGTGCTGGCGGAATGC 53 consensus_3329#2 ---------------------------------CCGGGAAGATAT-CGCCGGGTATAGCA 26 * ** * * * consensus_3329#0 TCGAGTCGGCTGGTGACATTTTGCCCAAGTTTGGCCG-TGCCCTGCCGGCGGAAGAGTTT 116 consensus_3329#1 TTTGAAGGTTTGAAGGAATTCAACCGCAACTGGATCGACACGCTGCTGCCC-ATCTTTCT 112 consensus_3329#2 TCGAA---AATGCGTACATG-GACGAAAAGGAGGAAGCGATTCTGGCGCTGATGGAGTTT 82 * ** ** * * * * *** * * * consensus_3329#0 GCCGTTTACTTTGGACGCGTGTGGCCATACTTTATTCAACACAAACTTGAACAAAACCAA 176 consensus_3329#1 GTCGTGCGTACAGGAC---CGCAACAACGAGGTACGCAGCAACACGGTGTACGGA-CTGG 168 consensus_3329#2 GCCGAGCATACGGGGCCCGCCTTTGCACCGTTCATACAGACGGCGTTTGAGGAAATCTAC 142 * ** ** * * * ** ** * * consensus_3329#0 GCAAAACGGATGAAAC---GAGCGACTCGCAGCGTGCCTTTGCGATCGGCGTGCT--GGC 231 consensus_3329#1 GAGAGATGG-TGAAGCATGGAAAGGATTGCA-CTTTCGGTCACTATCCGCAAATTATGGC 226 consensus_3329#2 ---AAACTGTTGAACC---ACCCGAACGAGGACATTCGGAAGGCGTCGATCGACG-CGGT 195 * * * **** * * * * * ** ** consensus_3329#0 GGAACTGCTTTGAACGGTTCTGAACGGAATTCAACC--GCAAACTGGATCG-ACACGCTG 288 consensus_3329#1 AGCACTCTCCCGGCTCGTATCCAAAGAACAGCATGCCGGCACACTGGA-CA-ACCTGTGC 284 consensus_3329#2 CAAACAGTTTGTGGTGGCACTGCAC------CAGCTGGGCAACATGGAGGGTGTCCACCA 249 ** * * ** *** **** consensus_3329#0 CCTGCCCCATCTTCTCT-GTCGCCTGCGGCTACAGAGAACCGCAACAACGAGGCTACGCA 347 consensus_3329#1 GGAGCCCTGGCACGACTCATTATTACCAACTGCAGTTTGGTGCCGCTGAAAAGT---GTT 341 consensus_3329#2 GACGATCCTGATTCTGGTGCCGAAGCTGAGCGAAATCATCCGTACGGACGAGGA-GCGCA 308 * * * * * * * consensus_3329#0 CGCCAACCACCGGCATGCTACGGACTGGCGCAGCAGCACTGCGCTGAACGC---ACTGCG 404 consensus_3329#1 CTCCCGGTGTTTGTGGAGTATCTTCCATTGCGTGAAGATTTTACCGAAAATTTGGCCGTG 401 consensus_3329#2 CGGTCGTCAT--GTCGGCGCTGGATGGGTTCAGCGACATACTGCAGGAGGTC--GGTGCG 364 * * * * * * * * * consensus_3329#0 CACAACGGACTTGCCACTCTCTCCGCGATCACTACTCCGCCAAACTN-ACTGCGCACGCA 463 consensus_3329#1 TTCCAGTGCCTTG--ATTTGCTGTACAAGCAGGGCGACGAGAACCTA-ATACCG-GCGC- 456 consensus_3329#2 -GCCACGTTCCAG--GCCGACGGGCAGAAGGACGCCGTGTTTAATTGCATTGTGGACGTG 421 * * * * * * * * * * * * ** consensus_3329#0 CCTC-TCCCAGCCTCGTACTCCAAAACGCAACAGCATGCCGGCCACAC---TGGCAC--A 517 consensus_3329#1 TGTG-CCGCATTCTGGTGGTT-GGTTTGCAGGTGCTTTGCAAGAAGGAGTATGGCACTGA 514 consensus_3329#2 CTGAATGGAAAGGTTGCCTGCCAGTTCG-ATGAGCCGGTGGATGAGGAGCAGGAGGAGAG 480 * * * * * ** * * consensus_3329#0 ACCCTGCTGCGGAGCCCCCTGCGGCCACGACTCACTTTACTTACCCCAAACCTGCCAGCT 577 consensus_3329#1 AGAATGCCGCGAA--CTGGTGCACAATCTGGTGAAACAGATCAGCAAAGACTNCCCGGAC 572 consensus_3329#2 CGAGTACGACGAAGCCATCCTCGAGT-CGGCTGGTGACATTTTGCCCAAGTTTGGCCGTG 539 * * ** * * * * * * * * * * consensus_3329#0 NTNTGA-GGC--ATGNCCCGGCCCTGCA-CACACACGCTGCTNTCCTCCCCCGCGGACTG 633 consensus_3329#1 AAGTTC-GCC--GAGGTGATCCGCAGCAGCGCCGAGGCTGCCGAGTTTGTGCA---ANCG 626 consensus_3329#2 CCCTGCCGGCGGAAGAGTTTGCCGTTTACTTTGGACGCGTGTGGCCATACTT------TA 593 * * * * * * * ** consensus_3329#0 CATACTCTGCTGCNGNAGCTAATTCTTTCCCAACTC-TGGGCCGCTTGCANACGGC--AA 690 consensus_3329#1 CTTTCGCTGCAGTAGANNTTAGCGAAGCCGCATTNCATGCGCAANCTGTNTGTCACGTAC 686 consensus_3329#2 TTCAAAAAATTGAAAAAACCAAGCAAAAAGGATGAAACGAGCGACTCGCAGCG------- 646 * * * * ** * consensus_3329#0 CTTATACTAACCCCCGNACANAAACTCTCTGGGG--- 724 consensus_3329#1 ATNANTCATATCTCNGCATAATACATGCATGAAACGG 723 consensus_3329#2 ------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||