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Anopheles gambiae
cluster # 3329 cluster # 3329       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3329#0 length = 724 sequences # 1  
consensus_3329#1 length = 723 sequences # 1  
consensus_3329#2 length = 646 sequences # 1  

consensusID : consensus_3329#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 724
fasta sequence
                              [CCCGAGGTTTACTGGTGGATGAGGAGCAGGAGGAGAGCGAGTACGACGAAGCCATCCTCGAGTCGGCTGGTGACATTTTGCCCAAGTTTGGCCGTGCCCTGCCGGCGGAAGAGTTTGCCGTTTACTTTGGACGCGTGTGGCCATACTTTATTCAACACAAACTTGAACAAAACCAAGCAAAACGGATGAAACGAGCGACTCGCAGCGTGCCTTTGCGATCGGCGTGCTGGCGGAACTGCTTTGAACGGTTCTGAACGGAATTCAACCGCAAACTGGATCGACACGCTGCCTGCCCCATCTTCTCTGTCGCCTGCGGCTACAGAGAACCGCAACAACGAGGCTACGCACGCCAACCACCGGCATGCTACGGACTGGCGCAGCAGCACTGCGCTGAACGCACTGCGCACAACGGACTTGCCACTCTCTCCGCGATCACTACTCCGCCAAACTNACTGCGCACGCACCTCTCCCAGCCTCGTACTCCAAAACGCAACAGCATGCCGGCCACACTGGCACAACCCTGCTGCGGAGCCCCCTGCGGCCACGACTCACTTTACTTACCCCAAACCTGCCAGCTNTNTGAGGCATGNCCCGGCCCTGCACACACACGCTGCTNTCCTCCCCCGCGGACTGCATACTCTGCTGCNGNAGCTAATTCTTTCCCAACTCTGGGCCGCTTGCANACGGCAACTTATACTAACCCCCGNACANAAACTCTCTGGGG]

[+] EMBL AL695589             [CCCGAGGTTTACTGGTGGATGAGGAGCAGGAGGAGAGCGAGTACGACGAAGCCATCCTCGAGTCGGCTGGTGACATTTTGCCCAAGTTTGGCCGTGCCCTGCCGGCGGAAGAGTTTGCCGTTTACTTTGGACGCGTGTGGCCATACTTTATTCAACACAAACTTGAACAAAACCAAGCAAAACGGATGAAACGAGCGACTCGCAGCGTGCCTTTGCGATCGGCGTGCTGGCGGAACTGCTTTGAACGGTTCTGAACGGAATTCAACCGCAAACTGGATCGACACGCTGCCTGCCCCATCTTCTCTGTCGCCTGCGGCTACAGAGAACCGCAACAACGAGGCTACGCACGCCAACCACCGGCATGCTACGGACTGGCGCAGCAGCACTGCGCTGAACGCACTGCGCACAACGGACTTGCCACTCTCTCCGCGATCACTACTCCGCCAAACTNACTGCGCACGCACCTCTCCCAGCCTCGTACTCCAAAACGCAACAGCATGCCGGCCACACTGGCACAACCCTGCTGCGGAGCCCCCTGCGGCCACGACTCACTTTACTTACCCCAAACCTGCCAGCTNTNTGAGGCATGNCCCGGCCCTGCACACACACGCTGCTNTCCTCCCCCGCGGACTGCATACTCTGCTGCNGNAGCTAATTCTTTCCCAACTCTGGGCCGCTTGCANACGGCAACTTATACTAACCCCCGNACANAAACTCTCTGGGG]


>consensus_3329#0 CCCGAGGTTTACTGGTGGATGAGGAGCAGGAGGAGAGCGAGTACGACGAAGCCATCCTCG AGTCGGCTGGTGACATTTTGCCCAAGTTTGGCCGTGCCCTGCCGGCGGAAGAGTTTGCCG TTTACTTTGGACGCGTGTGGCCATACTTTATTCAACACAAACTTGAACAAAACCAAGCAA AACGGATGAAACGAGCGACTCGCAGCGTGCCTTTGCGATCGGCGTGCTGGCGGAACTGCT TTGAACGGTTCTGAACGGAATTCAACCGCAAACTGGATCGACACGCTGCCTGCCCCATCT TCTCTGTCGCCTGCGGCTACAGAGAACCGCAACAACGAGGCTACGCACGCCAACCACCGG CATGCTACGGACTGGCGCAGCAGCACTGCGCTGAACGCACTGCGCACAACGGACTTGCCA CTCTCTCCGCGATCACTACTCCGCCAAACTNACTGCGCACGCACCTCTCCCAGCCTCGTA CTCCAAAACGCAACAGCATGCCGGCCACACTGGCACAACCCTGCTGCGGAGCCCCCTGCG GCCACGACTCACTTTACTTACCCCAAACCTGCCAGCTNTNTGAGGCATGNCCCGGCCCTG CACACACACGCTGCTNTCCTCCCCCGCGGACTGCATACTCTGCTGCNGNAGCTAATTCTT TCCCAACTCTGGGCCGCTTGCANACGGCAACTTATACTAACCCCCGNACANAAACTCTCT GGGG



consensusID : consensus_3329#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 723
fasta sequence
                              [ATGAAACGAGCGACTCGCAGCGTGCCTTTGCGATCGGCGTGCTGGCGGAATGCTTTGAAGGTTTGAAGGAATTCAACCGCAACTGGATCGACACGCTGCTGCCCATCTTTCTGTCGTGCGTACAGGACCGCAACAACGAGGTACGCAGCAACACGGTGTACGGACTGGGAGAGATGGTGAAGCATGGAAAGGATTGCACTTTCGGTCACTATCCGCAAATTATGGCAGCACTCTCCCGGCTCGTATCCAAAGAACAGCATGCCGGCACACTGGACAACCTGTGCGGAGCCCTGGCACGACTCATTATTACCAACTGCAGTTTGGTGCCGCTGAAAAGTGTTCTCCCGGTGTTTGTGGAGTATCTTCCATTGCGTGAAGATTTTACCGAAAATTTGGCCGTGTTCCAGTGCCTTGATTTGCTGTACAAGCAGGGCGACGAGAACCTAATACCGGCGCTGTGCCGCATTCTGGTGGTTGGTTTGCAGGTGCTTTGCAAGAAGGAGTATGGCACTGAAGAATGCCGCGAACTGGTGCACAATCTGGTGAAACAGATCAGCAAAGACTNCCCGGACAAGTTCGCCGAGGTGATCCGCAGCAGCGCCGAGGCTGCCGAGTTTGTGCAANCGCTTTCGCTGCAGTAGANNTTAGCGAAGCCGCATTNCATGCGCAANCTGTNTGTCACGTACATNANTCATATCTCNGCATAATACATGCATGAAACGG]

[+] EMBL CF541661             [ATGAAACGAGCGACTCGCAGCGTGCCTTTGCGATCGGCGTGCTGGCGGAATGCTTTGAAGGTTTGAAGGAATTCAACCGCAACTGGATCGACACGCTGCTGCCCATCTTTCTGTCGTGCGTACAGGACCGCAACAACGAGGTACGCAGCAACACGGTGTACGGACTGGGAGAGATGGTGAAGCATGGAAAGGATTGCACTTTCGGTCACTATCCGCAAATTATGGCAGCACTCTCCCGGCTCGTATCCAAAGAACAGCATGCCGGCACACTGGACAACCTGTGCGGAGCCCTGGCACGACTCATTATTACCAACTGCAGTTTGGTGCCGCTGAAAAGTGTTCTCCCGGTGTTTGTGGAGTATCTTCCATTGCGTGAAGATTTTACCGAAAATTTGGCCGTGTTCCAGTGCCTTGATTTGCTGTACAAGCAGGGCGACGAGAACCTAATACCGGCGCTGTGCCGCATTCTGGTGGTTGGTTTGCAGGTGCTTTGCAAGAAGGAGTATGGCACTGAAGAATGCCGCGAACTGGTGCACAATCTGGTGAAACAGATCAGCAAAGACTNCCCGGACAAGTTCGCCGAGGTGATCCGCAGCAGCGCCGAGGCTGCCGAGTTTGTGCAANCGCTTTCGCTGCAGTAGANNTTAGCGAAGCCGCATTNCATGCGCAANCTGTNTGTCACGTACATNANTCATATCTCNGCATAATACATGCATGAAACGG]


>consensus_3329#1 ATGAAACGAGCGACTCGCAGCGTGCCTTTGCGATCGGCGTGCTGGCGGAATGCTTTGAAG GTTTGAAGGAATTCAACCGCAACTGGATCGACACGCTGCTGCCCATCTTTCTGTCGTGCG TACAGGACCGCAACAACGAGGTACGCAGCAACACGGTGTACGGACTGGGAGAGATGGTGA AGCATGGAAAGGATTGCACTTTCGGTCACTATCCGCAAATTATGGCAGCACTCTCCCGGC TCGTATCCAAAGAACAGCATGCCGGCACACTGGACAACCTGTGCGGAGCCCTGGCACGAC TCATTATTACCAACTGCAGTTTGGTGCCGCTGAAAAGTGTTCTCCCGGTGTTTGTGGAGT ATCTTCCATTGCGTGAAGATTTTACCGAAAATTTGGCCGTGTTCCAGTGCCTTGATTTGC TGTACAAGCAGGGCGACGAGAACCTAATACCGGCGCTGTGCCGCATTCTGGTGGTTGGTT TGCAGGTGCTTTGCAAGAAGGAGTATGGCACTGAAGAATGCCGCGAACTGGTGCACAATC TGGTGAAACAGATCAGCAAAGACTNCCCGGACAAGTTCGCCGAGGTGATCCGCAGCAGCG CCGAGGCTGCCGAGTTTGTGCAANCGCTTTCGCTGCAGTAGANNTTAGCGAAGCCGCATT NCATGCGCAANCTGTNTGTCACGTACATNANTCATATCTCNGCATAATACATGCATGAAA CGG



consensusID : consensus_3329#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 646
fasta sequence
                              [CCGGGAAGATATCGCCGGGTATAGCATCGAAAATGCGTACATGGACGAAAAGGAGGAAGCGATTCTGGCGCTGATGGAGTTTGCCGAGCATACGGGGCCCGCCTTTGCACCGTTCATACAGACGGCGTTTGAGGAAATCTACAAACTGTTGAACCACCCGAACGAGGACATTCGGAAGGCGTCGATCGACGCGGTCAAACAGTTTGTGGTGGCACTGCACCAGCTGGGCAACATGGAGGGTGTCCACCAGACGATCCTGATTCTGGTGCCGAAGCTGAGCGAAATCATCCGTACGGACGAGGAGCGCACGGTCGTCATGTCGGCGCTGGATGGGTTCAGCGACATACTGCAGGAGGTCGGTGCGGCCACGTTCCAGGCCGACGGGCAGAAGGACGCCGTGTTTAATTGCATTGTGGACGTGCTGAATGGAAAGGTTGCCTGCCAGTTCGATGAGCCGGTGGATGAGGAGCAGGAGGAGAGCGAGTACGACGAAGCCATCCTCGAGTCGGCTGGTGACATTTTGCCCAAGTTTGGCCGTGCCCTGCCGGCGGAAGAGTTTGCCGTTTACTTTGGACGCGTGTGGCCATACTTTATTCAAAAAATTGAAAAAACCAAGCAAAAAGGATGAAACGAGCGACTCGCAGCG]

[+] EMBL BM636089             [CCGGGAAGATATCGCCGGGTATAGCATCGAAAATGCGTACATGGACGAAAAGGAGGAAGCGATTCTGGCGCTGATGGAGTTTGCCGAGCATACGGGGCCCGCCTTTGCACCGTTCATACAGACGGCGTTTGAGGAAATCTACAAACTGTTGAACCACCCGAACGAGGACATTCGGAAGGCGTCGATCGACGCGGTCAAACAGTTTGTGGTGGCACTGCACCAGCTGGGCAACATGGAGGGTGTCCACCAGACGATCCTGATTCTGGTGCCGAAGCTGAGCGAAATCATCCGTACGGACGAGGAGCGCACGGTCGTCATGTCGGCGCTGGATGGGTTCAGCGACATACTGCAGGAGGTCGGTGCGGCCACGTTCCAGGCCGACGGGCAGAAGGACGCCGTGTTTAATTGCATTGTGGACGTGCTGAATGGAAAGGTTGCCTGCCAGTTCGATGAGCCGGTGGATGAGGAGCAGGAGGAGAGCGAGTACGACGAAGCCATCCTCGAGTCGGCTGGTGACATTTTGCCCAAGTTTGGCCGTGCCCTGCCGGCGGAAGAGTTTGCCGTTTACTTTGGACGCGTGTGGCCATACTTTATTCAAAAAATTGAAAAAACCAAGCAAAAAGGATGAAACGAGCGACTCGCAGCG]


>consensus_3329#2 CCGGGAAGATATCGCCGGGTATAGCATCGAAAATGCGTACATGGACGAAAAGGAGGAAGC GATTCTGGCGCTGATGGAGTTTGCCGAGCATACGGGGCCCGCCTTTGCACCGTTCATACA GACGGCGTTTGAGGAAATCTACAAACTGTTGAACCACCCGAACGAGGACATTCGGAAGGC GTCGATCGACGCGGTCAAACAGTTTGTGGTGGCACTGCACCAGCTGGGCAACATGGAGGG TGTCCACCAGACGATCCTGATTCTGGTGCCGAAGCTGAGCGAAATCATCCGTACGGACGA GGAGCGCACGGTCGTCATGTCGGCGCTGGATGGGTTCAGCGACATACTGCAGGAGGTCGG TGCGGCCACGTTCCAGGCCGACGGGCAGAAGGACGCCGTGTTTAATTGCATTGTGGACGT GCTGAATGGAAAGGTTGCCTGCCAGTTCGATGAGCCGGTGGATGAGGAGCAGGAGGAGAG CGAGTACGACGAAGCCATCCTCGAGTCGGCTGGTGACATTTTGCCCAAGTTTGGCCGTGC CCTGCCGGCGGAAGAGTTTGCCGTTTACTTTGGACGCGTGTGGCCATACTTTATTCAAAA AATTGAAAAAACCAAGCAAAAAGGATGAAACGAGCGACTCGCAGCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3329#0      CCCGAGGTTTACTGGTGGATGAGGAGCAGGAG---GAGAGCGAGTACGACGAAGCCATCC 57
consensus_3329#1      ------ATGAAACGAGCGACTCGCAGCGTGCCTTTGCGATCG-GCGTGCTGGCGGAATGC 53
consensus_3329#2      ---------------------------------CCGGGAAGATAT-CGCCGGGTATAGCA 26
                                                         * **        *  *     *   

consensus_3329#0      TCGAGTCGGCTGGTGACATTTTGCCCAAGTTTGGCCG-TGCCCTGCCGGCGGAAGAGTTT 116
consensus_3329#1      TTTGAAGGTTTGAAGGAATTCAACCGCAACTGGATCGACACGCTGCTGCCC-ATCTTTCT 112
consensus_3329#2      TCGAA---AATGCGTACATG-GACGAAAAGGAGGAAGCGATTCTGGCGCTGATGGAGTTT 82
                      *         **     **    *   *    *   *     ***  *         * *

consensus_3329#0      GCCGTTTACTTTGGACGCGTGTGGCCATACTTTATTCAACACAAACTTGAACAAAACCAA 176
consensus_3329#1      GTCGTGCGTACAGGAC---CGCAACAACGAGGTACGCAGCAACACGGTGTACGGA-CTGG 168
consensus_3329#2      GCCGAGCATACGGGGCCCGCCTTTGCACCGTTCATACAGACGGCGTTTGAGGAAATCTAC 142
                      * **        ** *          *      *  **         **     * *   

consensus_3329#0      GCAAAACGGATGAAAC---GAGCGACTCGCAGCGTGCCTTTGCGATCGGCGTGCT--GGC 231
consensus_3329#1      GAGAGATGG-TGAAGCATGGAAAGGATTGCA-CTTTCGGTCACTATCCGCAAATTATGGC 226
consensus_3329#2      ---AAACTGTTGAACC---ACCCGAACGAGGACATTCGGAAGGCGTCGATCGACG-CGGT 195
                         * *  * **** *       *        * * *        **          ** 

consensus_3329#0      GGAACTGCTTTGAACGGTTCTGAACGGAATTCAACC--GCAAACTGGATCG-ACACGCTG 288
consensus_3329#1      AGCACTCTCCCGGCTCGTATCCAAAGAACAGCATGCCGGCACACTGGA-CA-ACCTGTGC 284
consensus_3329#2      CAAACAGTTTGTGGTGGCACTGCAC------CAGCTGGGCAACATGGAGGGTGTCCACCA 249
                         **           *      *       **     ***   ****            

consensus_3329#0      CCTGCCCCATCTTCTCT-GTCGCCTGCGGCTACAGAGAACCGCAACAACGAGGCTACGCA 347
consensus_3329#1      GGAGCCCTGGCACGACTCATTATTACCAACTGCAGTTTGGTGCCGCTGAAAAGT---GTT 341
consensus_3329#2      GACGATCCTGATTCTGGTGCCGAAGCTGAGCGAAATCATCCGTACGGACGAGGA-GCGCA 308
                         *  *                          *       *        * *    *  

consensus_3329#0      CGCCAACCACCGGCATGCTACGGACTGGCGCAGCAGCACTGCGCTGAACGC---ACTGCG 404
consensus_3329#1      CTCCCGGTGTTTGTGGAGTATCTTCCATTGCGTGAAGATTTTACCGAAAATTTGGCCGTG 401
consensus_3329#2      CGGTCGTCAT--GTCGGCGCTGGATGGGTTCAGCGACATACTGCAGGAGGTC--GGTGCG 364
                      *           *                 *      *     * * *         * *

consensus_3329#0      CACAACGGACTTGCCACTCTCTCCGCGATCACTACTCCGCCAAACTN-ACTGCGCACGCA 463
consensus_3329#1      TTCCAGTGCCTTG--ATTTGCTGTACAAGCAGGGCGACGAGAACCTA-ATACCG-GCGC- 456
consensus_3329#2      -GCCACGTTCCAG--GCCGACGGGCAGAAGGACGCCGTGTTTAATTGCATTGTGGACGTG 421
                        * *    *  *       *      *      *   *   *  *  *    *  **  

consensus_3329#0      CCTC-TCCCAGCCTCGTACTCCAAAACGCAACAGCATGCCGGCCACAC---TGGCAC--A 517
consensus_3329#1      TGTG-CCGCATTCTGGTGGTT-GGTTTGCAGGTGCTTTGCAAGAAGGAGTATGGCACTGA 514
consensus_3329#2      CTGAATGGAAAGGTTGCCTGCCAGTTCG-ATGAGCCGGTGGATGAGGAGCAGGAGGAGAG 480
                               *   * *           * *   **         *       *       

consensus_3329#0      ACCCTGCTGCGGAGCCCCCTGCGGCCACGACTCACTTTACTTACCCCAAACCTGCCAGCT 577
consensus_3329#1      AGAATGCCGCGAA--CTGGTGCACAATCTGGTGAAACAGATCAGCAAAGACTNCCCGGAC 572
consensus_3329#2      CGAGTACGACGAAGCCATCCTCGAGT-CGGCTGGTGACATTTTGCCCAAGTTTGGCCGTG 539
                          * *  ** *  *     *     *   *        *   *  *       * *  

consensus_3329#0      NTNTGA-GGC--ATGNCCCGGCCCTGCA-CACACACGCTGCTNTCCTCCCCCGCGGACTG 633
consensus_3329#1      AAGTTC-GCC--GAGGTGATCCGCAGCAGCGCCGAGGCTGCCGAGTTTGTGCA---ANCG 626
consensus_3329#2      CCCTGCCGGCGGAAGAGTTTGCCGTTTACTTTGGACGCGTGTGGCCATACTT------TA 593
                         *   * *    *      *     *      * **                      

consensus_3329#0      CATACTCTGCTGCNGNAGCTAATTCTTTCCCAACTC-TGGGCCGCTTGCANACGGC--AA 690
consensus_3329#1      CTTTCGCTGCAGTAGANNTTAGCGAAGCCGCATTNCATGCGCAANCTGTNTGTCACGTAC 686
consensus_3329#2      TTCAAAAAATTGAAAAAACCAAGCAAAAAGGATGAAACGAGCGACTCGCAGCG------- 646
                                 *        *          *      * **     *            

consensus_3329#0      CTTATACTAACCCCCGNACANAAACTCTCTGGGG--- 724
consensus_3329#1      ATNANTCATATCTCNGCATAATACATGCATGAAACGG 723
consensus_3329#2      -------------------------------------
                                                           




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)