These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3335#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1045 fasta sequence [AACCTTGAAGACAACCACTCTCTGGTGGATGGGTCCGACGTTCCTCCAGAGAGCCGATTACGACGTAGAGATTCCGGAAGATCTTCCTGACGAAATCGTTCCAGAATTGAGAGCGTCACCCGTCGTTGCAGCGCTGGTTGTCAATCAAGACAAACTACCCGTGTTCTTGAAGTTTAGCTCTTTTCGAAAACTGCAACGAGTGATTGCTCTAGTTCAACGCTTCATCCTGAATTGTCGACAAAGAGACGTTTCAAAGCGTGTAACCTGCCAACATTGTACCATCACCGAACTTCGAAGCGCTTTAAACGTCATTGTAAAGGTCATTCAACATGAGGCTCTTTCTGACGAAATCCACCGAGTGAAGGCTAATGAGCCGTGTAAGCGGATTCAAGCTCTGCATCCGTTCATCATCGACGAGATTCTGCGAGTCGGAGGAAGACTCCAGAATTCCAAATCTACCACTGTCCAGTAAACATCAAATCTTGCTACCAAAGCATCCCATCACCGATCTCATCATCTTGACGTTTCACCAAGAGCTCATGCATGCGGGTCCCTCCGGTCTCCTAGCGGCGCTTCGATTGAAG-TTTGGCTGCTAGATGGACGATCATCAGTCCGTAAGATCACCCCGATCCTGTGTCCGNTGTTTTCCGATCGAAGCCTCGAAGTT-CAGCCAGNTGATGGGCATCCTGCCGTCATGTCAAGTGACTCAAGCCCATCCGTTCGAGAAAACAGGAATAGACTACGCTGGTCCGGTATGGGTCAAGGAGGGCCGATACAAACCTCGCCTTGTGAAGGCTTACATTGCTGTCTTTGTCTGCATGGCAACGAAGGCGGTACACTTGGAGTTAGTCTCGGACATGTCGAGCGAGACTTTCCTTGCTGCATTTCATCGATTTACTAGTCGACGCGGCTTGAGCAAGGAAATCTTTTCGGACAATGGATGTAATTTCAAGGGGGCTAGTTCGGAACTACATGAGCTGTACCAACTATTTCAAACCCGAACGACCGTCGACGAGATCGAGAAATATTGTCAGCCAAAGGAGAT] [+] EMBL BX627121 [AACCTTGAAGACAACCACTCTCTGGTGGATGGGTCCGACGTTCCTCCAGAGAGCCGATTACGACGTAGAGATTCCGGAAGATCTTCCTGACGAAATCGTTCCAGAATTGAGAGCGTCACCCGTCGTTGCAGCGCTGGTTGTCAATCAAGACAAACTACCCGTGTTCTTGAAGTTTAGCTCTTTTCGAAAACTGCAACGAGTGATTGCTCTAGTTCAACGCTTCATCCTGAATTGTCGACAAAGAGACGTTTCAAAGCGTGTAACCTGCCAACATTGTACCATCACCGAACTTCGAAGCGCTTTAAACGTCATTGTAAAGGTCATTCAACATGAGGCTCTTTCTGACGAAATCCACCGAGTGAAGGCTAATGAGCCGTGTAAGCGGATTCAAGCTCTGCATCCGTTCATCATCGACGAGATTCTGCGAGTCGGAGGAAGACTCCAGAATTCCAAATCTACCACTGTCCAGTAAACATCAAATCTTGCTACCAAAGCATCCCATCACCGATCTCATCATCTTGACGTTTCACCAAGAGCTCATGCATGCGGGTCCCTCCGGTCTCCTAGCGGCGCTTCGATTGAAG TTTGGCTGCTAGATGGACGATCATCAGTCCGTAAGATCACCCCGATCCTGTGTCCGNTGTTTTCCGATCGAAGCCTCGAAGTT CAGCCAGNTGATGGGCATCCTGCCGTCAT ] [+] EMBL BM623069 [ ccgGGAAGACTCCAGAATTCC AATCTACCACTGTCCAGTAAACATCAAATCTTGCTACCAAAGCATCCCATCACCGATCTCATCATCTTGACGTTTCACCAAGAGCTCATGCATGCGGGTCCCTCCGGTCTCCTAGCGGCGCTTCGATTGAAGTTTTGGCTGCTAGATGGACGATCATCAGTCCGTAAGATCA CCCGATCCTGTGTCCGTTG TTTCCGATCGAAGCCTCGAAGTTCCAGCCAGTTGATGGGCATCCTGCCGTCATGTCAAGTGACTCAAGCCCATCCGTTCGAGAAAACAGGAATAGACTACGCTGGTCCGGTATGGGTCAAGGAGGGCCGATACAAACCTCGCCTTGTGAAGGCTTACATTGCTGTCTTTGTCTGCATGGCAACGAAGGCGGTACACTTGGAGTTAGTCTCGGACATGTCGAGCGAGACTTTCCTTGCTGCATTTCATCGATTTACTAGTCGACGCGGCTTGAGCAAGGAAATCTTTTCGGACAATGGATGTAATTTCAAGGGGGCTAGTTCGGAACTACATGAGCTGTACCAACTATTTCAAACCCGAACGACCGTCGACGAGATCGAGAAATATTGTCAGCCAAAGGAGAT] consensusID : consensus_3335#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 314 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGGAGCCTATCTTCTCGCAAGGTTGATCTCCAAGGTTGCTGGGTCCATCGATCTTCACCTCCGCAACATCATACTCTGGACTGACAGCCAGATTGTCCTTGCTTGGCTGAAGAAACCACTTGCAACCCTGCAAGTGTTTGTGCGAAATCGAAGTGAAAAAATTCGCAACCTTACCGAACCGCTGGACGTACAATGGAAGTACATTTCAACGAAGGAAAATCCAGCTGACATCGTGTCTCGAGGTCTTCTGCCAGAAACCTTGAAGACAACCACTCTCTGGTGGATGGG] [+] EMBL BM632766 [CCGCCCACGCGTCCGCCCACGCGTCCGGGAGCCTATCTTCTCGCAAGGTTGATCTCCAAGGTTGCTGGGTCCATCGATCTTCACCTCCGCAACATCATACTCTGGACTGACAGCCAGATTGTCCTTGCTTGGCTGAAGAAACCACTTGCAACCCTGCAAGTGTTTGTGCGAAATCGAAGTGAAAAAATTCGCAACCTTACCGAACCGCTGGACGTACAATGGAAGTACATTTCAACGAAGGAAAATCCAGCTGACATCGTGTCTCGAGGTCTTCTGCCAGAAACCTTGAAGACAACCACTCTCTGGTGGATGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3335#0 AACCTTGAAGACAACCACTCTCTGGTGGATGGGTCCGACGTTCCTCCAGAGAGCCGATTA 60 consensus_3335#1 ------------------------------------------------------------ consensus_3335#0 CGACGTAGAGATTCCGGAAGATCTTCCTGACGAAATCGTTCCAGAATTGAGAGCGTCACC 120 consensus_3335#1 ------------------------------------------------------------ consensus_3335#0 CGTCGTTGCAGCGCTGGTTGTCAATCAAGACAAACTACCCGTGTTCTTGAAGTTTAGCTC 180 consensus_3335#1 ------------------------------------------------------------ consensus_3335#0 TTTTCGAAAACTGCAACGAGTGATTGCTCTAGTTCAACGCTTCATCCTGAATTGTCGACA 240 consensus_3335#1 ------------------------------------------------------------ consensus_3335#0 AAGAGACGTTTCAAAGCGTGTAACCTGCCAACATTGTACCATCACCGAACTTCGAAGCGC 300 consensus_3335#1 ------------------------------------------------------------ consensus_3335#0 TTTAAACGTCATTGTAAAGGTCATTCAACATGAGGCTCTTTCTGACGAAATCCACCGAGT 360 consensus_3335#1 ------------------------------------------------------------ consensus_3335#0 GAAGGCTAATGAGCCGTGTAAGCGGATTCAAGCTCTGCATCCGTTCATCATCGACGAGAT 420 consensus_3335#1 ---------------------------------------------------------CCG 3 consensus_3335#0 TCTGCGAGTCGGAGGAAGACTCCAGAATTCCAAATCTACCACTGTCCAGTAAACATCAAA 480 consensus_3335#1 CCCACGCGTCCGCCCACGCGTCCGGGAGCCT--ATCTTCT--CGCAAGGTTGATCTCCAA 59 * ** *** * * * *** * * * **** * * ** * ** ** consensus_3335#0 TCTTGCTA---CCAAAGCATCCCATCACCGATCTCATCATCTTGACGTTTCACCAAGAGC 537 consensus_3335#1 GGTTGCTGGGTCCATCGATCTTCACCTCCG-CAACATCATACTCTGGACTGACAGCCAGA 118 ***** *** * ** * *** ****** * * * ** ** consensus_3335#0 TCATGCATGCGGGTCCCTCCGGTCTCCTAGCGGCGCTTCGATTGAAGTTTGGCTGCTAGA 597 consensus_3335#1 TTGTCCTTGCTTGGCTGAAGAAACCACTTGCAACCCTGCAAGTG---TTTG--TGCGAAA 173 * * * *** * * * ** ** * ** * * ** **** *** * * consensus_3335#0 TGGACGATCATCAGTCCGTAAGATCACCCCGATCCTGTGTCCGNTGTTTTCCGATCGAAG 657 consensus_3335#1 TCGAAGTGAAAAAATTCGCAACCTTACC--GAACCGCTGGACGTA------CAATGGAAG 225 * ** * * * * ** ** * *** ** ** ** ** * ** **** consensus_3335#0 CCTCGAAGTTCAGCCAGNTGATGGGCATCCTGCCGTCATGTCAAGTGACTCAAGCCCATC 717 consensus_3335#1 TAC---ATTTCAACGAAG----GAAAATCCAGCTGACAT----CGTGTCTCGAGGTCTTC 274 * **** * * * **** ** * *** *** *** ** * ** consensus_3335#0 CGTTCGAGAAAACAGGAATAGACTACGCTGGTCCGGTATGGGTCAAGGAGGGCCGATACA 777 consensus_3335#1 TGCCAGAAACCTTGAAGACA-ACCACTCTCTGGTGG-ATGGG------------------ 314 * ** * * * ** ** ** ** ***** consensus_3335#0 AACCTCGCCTTGTGAAGGCTTACATTGCTGTCTTTGTCTGCATGGCAACGAAGGCGGTAC 837 consensus_3335#1 ------------------------------------------------------------ consensus_3335#0 ACTTGGAGTTAGTCTCGGACATGTCGAGCGAGACTTTCCTTGCTGCATTTCATCGATTTA 897 consensus_3335#1 ------------------------------------------------------------ consensus_3335#0 CTAGTCGACGCGGCTTGAGCAAGGAAATCTTTTCGGACAATGGATGTAATTTCAAGGGGG 957 consensus_3335#1 ------------------------------------------------------------ consensus_3335#0 CTAGTTCGGAACTACATGAGCTGTACCAACTATTTCAAACCCGAACGACCGTCGACGAGA 1017 consensus_3335#1 ------------------------------------------------------------ consensus_3335#0 TCGAGAAATATTGTCAGCCAAAGGAGAT 1045 consensus_3335#1 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||