cluster # 3348

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Anopheles gambiae
cluster # 3348 cluster # 3348 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3348#0 length = 579 sequences # 2

consensus_3348#1 length = 167 sequences # 1

consensusID : consensus_3348#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 579
fasta sequence

                              [CATTAAGTAAGATAATAGGTGCCATCATCAGCAATAGTGAAGGGAGAGAGGGTAACAGCGAAATTGATCCTAACGGCGTGTACGGGGGTGCGGTGGCGTGTCGCGTCTTGCCCCCCCCCCCGCAGGCCTGTGCCCAGGGTTTGTGTGTGTGTGTGGGCCTAAATGTAGATCGGATTCTCCTGCCCCGTCAGCAGCCGAAACATGGACGTCGGCATGGTTTTCATCAGTATCTCTCCGATCGATGTGGCGAGCAGGTTCACAATCTTTTCGTGCGGTACCGCGACGACGCTTTGGTTGTTGATCTCGATGATGCGGTGGCCCACGCGAACACCGCCCCGCTCCGCAATTCCTCCGCGCAGCAGGCTGCAAATCACACCGTTCTGTACGCTGAAGCCGAGCTGGTACTTGGTGTTCGGGCGCTTGATCTTCACCTCCACGACCGGCGCGCACGGCACGACCGTGAACTTCACCACCGTCTGGTTCTTGGTGTTCTTGATGTACCCCTGGCAGGTGGAGAGCGGCAGCCCGACCAGGCTCAGCCCGTTGATCGCGATGATCTGGTCGCCGATGTTCAGCTGG]

[+] EMBL AGA281795            [CATTAAGTAAGATAATAGGTGCCATCATCAGCAATAGTGAAGGGAGAGAGGGTAACAGCGAAATTGATCCTAACGGCGTGTACGGGGGTGCGGTGGCGTGTCGCGTCTTGCCCCCCCCCCCGCAGGCCTGTGCCCAGGGTTTGTGTGTGTGTGTGGGCCTAAATGTAGATCGGATTCTCCTGCCCCGTCAGCAGCCGAAACATGGACGTCGGCATGGTTTTCATCAGTATCTCTCCGATCGATGTGGCGAGCAGGTTCACAATCTTTTCGTGCGGTACCGCGACGACGCTTTGGTTGTTGATCTCGATGATGCGGTGGCCCACGCGAACACCGCCCCGCTCCGCAATTCCTCCGCGCAGCAGGCTGCAAATCACACCGTTCTGTACGCTGAAGCCGAGCTGGTACTTGGTGTTCGGGCGCTTGATCTTC                                                                                                                                                      ]
[-] EMBL AGA280098            [                                                                                                                                                                                                              CGTCGGCATGGTTTTCATCAGTATCTCTCCGATCGATGTGGCGAGCAGGTTCACAATCTTTTCGTGCGGTACCGCGACGACGCTTTGGTTGTTGATCTCGATGATGCGGTGGCCCACGCGAACACCGCCCCGCTCCGCAATTCCTCCGCGCAGCAGGCTGCAAATCACACCGTTCTGTACGCTGAAGCCGAGCTGGTACTTGGTGTTCGGGCGCTTGATCTTCACCTCCACGACCGGCGCGCACGGCACGACCGTGAACTTCACCACCGTCTGGTTCTTGGTGTTCTTGATGTACCCCTGGCAGGTGGAGAGCGGCAGCCCGACCAGGCTCAGCCCGTTGATCGCGATGATCTGGTCGCCGATGTTCAGCTGG]




>consensus_3348#0
CATTAAGTAAGATAATAGGTGCCATCATCAGCAATAGTGAAGGGAGAGAGGGTAACAGCG
AAATTGATCCTAACGGCGTGTACGGGGGTGCGGTGGCGTGTCGCGTCTTGCCCCCCCCCC
CGCAGGCCTGTGCCCAGGGTTTGTGTGTGTGTGTGGGCCTAAATGTAGATCGGATTCTCC
TGCCCCGTCAGCAGCCGAAACATGGACGTCGGCATGGTTTTCATCAGTATCTCTCCGATC
GATGTGGCGAGCAGGTTCACAATCTTTTCGTGCGGTACCGCGACGACGCTTTGGTTGTTG
ATCTCGATGATGCGGTGGCCCACGCGAACACCGCCCCGCTCCGCAATTCCTCCGCGCAGC
AGGCTGCAAATCACACCGTTCTGTACGCTGAAGCCGAGCTGGTACTTGGTGTTCGGGCGC
TTGATCTTCACCTCCACGACCGGCGCGCACGGCACGACCGTGAACTTCACCACCGTCTGG
TTCTTGGTGTTCTTGATGTACCCCTGGCAGGTGGAGAGCGGCAGCCCGACCAGGCTCAGC
CCGTTGATCGCGATGATCTGGTCGCCGATGTTCAGCTGG

consensusID : consensus_3348#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 167
fasta sequence

                              [GTCACTTTATTGTAATGAACAAGAAGGTTTTAACAATGTTGTTGCTCCCATTAAGTAAGATAATAGGTGCCATCATCAGCAATAGTGAAGGGAGAGAGGGTAACAGCGAAATTGATCCTAACGGCGTGTACGGGGGTGCGGTGGCGTGTCGCGTCTAGAACTAGCGG]

[-] EMBL BM603226             [GTCACTTTATTGTAATGAACAAGAAGGTTTTAACAATGTTGTTGCTCCCATTAAGTAAGATAATAGGTGCCATCATCAGCAATAGTGAAGGGAGAGAGGGTAACAGCGAAATTGATCCTAACGGCGTGTACGGGGGTGCGGTGGCGTGTCGCGTCTAGAACTAGCGG]




>consensus_3348#1
GTCACTTTATTGTAATGAACAAGAAGGTTTTAACAATGTTGTTGCTCCCATTAAGTAAGA
TAATAGGTGCCATCATCAGCAATAGTGAAGGGAGAGAGGGTAACAGCGAAATTGATCCTA
ACGGCGTGTACGGGGGTGCGGTGGCGTGTCGCGTCTAGAACTAGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3348#0      ------------------------------------------------CATTAAGTAAGA 12
consensus_3348#1      GTCACTTTATTGTAATGAACAAGAAGGTTTTAACAATGTTGTTGCTCCCATTAAGTAAGA 60
                                                                      ************

consensus_3348#0      TAATAGGTGCCATCATCAGCAATAGTGAAGGGAGAGAGGGTAACAGCGAAATTGATCCTA 72
consensus_3348#1      TAATAGGTGCCATCATCAGCAATAGTGAAGGGAGAGAGGGTAACAGCGAAATTGATCCTA 120
                      ************************************************************

consensus_3348#0      ACGGCGTGTACGGGGGTGCGGTGGCGTGTCGCGTCTTGCCCCCCCCCCCGCAGGCCTGTG 132
consensus_3348#1      ACGGCGTGTACGGGGGTGCGGTGGCGTGTCGCGTCTAGAACTAGCGG------------- 167
                      ************************************ *  *   *               

consensus_3348#0      CCCAGGGTTTGTGTGTGTGTGTGGGCCTAAATGTAGATCGGATTCTCCTGCCCCGTCAGC 192
consensus_3348#1      ------------------------------------------------------------
                                                                                  

consensus_3348#0      AGCCGAAACATGGACGTCGGCATGGTTTTCATCAGTATCTCTCCGATCGATGTGGCGAGC 252
consensus_3348#1      ------------------------------------------------------------
                                                                                  

consensus_3348#0      AGGTTCACAATCTTTTCGTGCGGTACCGCGACGACGCTTTGGTTGTTGATCTCGATGATG 312
consensus_3348#1      ------------------------------------------------------------
                                                                                  

consensus_3348#0      CGGTGGCCCACGCGAACACCGCCCCGCTCCGCAATTCCTCCGCGCAGCAGGCTGCAAATC 372
consensus_3348#1      ------------------------------------------------------------
                                                                                  

consensus_3348#0      ACACCGTTCTGTACGCTGAAGCCGAGCTGGTACTTGGTGTTCGGGCGCTTGATCTTCACC 432
consensus_3348#1      ------------------------------------------------------------
                                                                                  

consensus_3348#0      TCCACGACCGGCGCGCACGGCACGACCGTGAACTTCACCACCGTCTGGTTCTTGGTGTTC 492
consensus_3348#1      ------------------------------------------------------------
                                                                                  

consensus_3348#0      TTGATGTACCCCTGGCAGGTGGAGAGCGGCAGCCCGACCAGGCTCAGCCCGTTGATCGCG 552
consensus_3348#1      ------------------------------------------------------------
                                                                                  

consensus_3348#0      ATGATCTGGTCGCCGATGTTCAGCTGG 579
consensus_3348#1      ---------------------------