cluster # 3355

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Anopheles gambiae
cluster # 3355 cluster # 3355 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3355#0 length = 702 sequences # 2

consensus_3355#1 length = 583 sequences # 1

consensusID : consensus_3355#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 702
fasta sequence

                              [CCGCCCACGCGTCCGCCTGGGCATCCGTGAACGTGCCAGCAGAAGTGCAGAAATAGTGTTTTACCTATAAACCTTTGGTCCGAGTGAAATTGTGTGTGGAATAGCAGTGAGAAAGGAGTGCAGTGAGTGGTGGAGTCCTGTAGAACAGACAGTGTAGTGGGAGCTACCGGAAGCTCCAGCAAATTATTTGCCCCGTACCGGTGCCCAACTTCAACAAGCAAACAGAACGCGTCCCCGGCACGCGCAGCACAGCCATGCGGTGGAAGTTACTTCTGCTGCTTTTCTGTGCGGTATCGCTGATCTCCCTATCAACCAGTGCCGCCGCAGAGGAGCACGAGCAAGAGCAGGATGACGCAACGGACGACGACTACGATGCGGTAGCGGCAGAGAATGAGGAGCAAACCGAACCGGAGGAGCAAACCGATCCAAGCGACGAACCGGAAGACACCGATCAAAAAACGAACGAGGACGTGATCGACGTCGACACGGACGCAGTGGACGAGGGCAAGGATAAGAAGGGCAGATACTACAACTATGCCGACTTTCTGTCGGAGCTCGATATGTCCGACTCCAACTACAACTGGGGAAGATCCAATGAATCGCGTCCAGCCGAAGGAACCGCCGACCCACAGCATCGACGGTGGGTACATCATCAACCCCGACCCGGCTCGCCCAGATCCGGCGCAACTTCCTGTACCCGTT]

[+] EMBL BM632845             [CCGCCCACGCGTCCGCCTGGGCATCCGTGAACGTGCCAGCAGAAGTGCAGAAATAGTGTTTTACCTATAAACCTTTGGTCCGAGTGAAATTGTGTGTGGAATAGCAGTGAGAAAGGAGTGCAGTGAGTGGTGGAGTCCTGTAGAACAGACAGTGTAGTGGGAGCTACCGGAAGCTCCAGCAAATTATTTGCCCCGTACCGGTGCCCAACTTCAACAAGCAAACAGAACGCGTCCCCGGCACGCGCAGCACAGCCATGCGGTGGAAGTTACTTCTGCTGCTTTTCTGTGCGGTATCGCTGATCTCCCTATCAACCAGTGCCGCCGCAGAGGAGCACGAGCAAGAGCAGGATGACGCAACGGACGACGACTACGATGCGGTAGCGGCAGAGAATGAGGAGCAAACCGAACCGGAGGAGCAAACCGATCCAAGCGACGAACCGGAAGACACCGATCAAAAAACGAACGAGGACGTGATCGACGTCGACACGGACGCAGTGGACGAGGGCAAGGATAAGAAGGGCAGATACTACAACTATGCCGACTTTCTGTCGGAGCTCGATATGTCCGACTCCAACTACAACTGGGGAAGATCCAATGAATCGCGTCCAGCCGAAGGAACCGCCGACCCACAGCATCGACGGTGGGTACATCATCAACCCCGACCCGGCTCGCCCAGATCCGGCGCAACTTCCTGTACCCGTT]
[+] EMBL BM622167             [      ccggggcatCCTGGGCATCCGTGAACGTGCCAGCAGAAGTGCAGAAATAGTGTTTTACCTATAAACCTTTGGTCCGAGTGAAATTGTGTGTGGAATAGCAGTGAGAAAGGAGTGCAGTGAGTGGTGGAGTCCTGTAGAACAGACAGTGTAGTGGGAGCTACCGGAAGCTCCAGCAAATTATTTGCCCCGTACCGGTGCCCAACTTCAACAAGCAAACAGAACGCGTCCCCGGCACGCGCAGCACAGCCATGCGGTGGAAGTTACTTCTGCTGCTTTTCTGTGCGGTATCGCTGATCTCCCTATCAACCAGTGCCGCCGCAGAGGAGCACGAGCAAGAGCAGGATGACGCAACGGACGACGACTACGATGCGGTAGCGGCAGAGAATGAGGAGCAAACCGAACCGGAGGAGCAAACCGATCCAAGCGACGAACCGGAAGACACCGATCAAAAAACGAACGAGGACGTGATCGACGTCGACACGGACGCAGTGGACGAGGGCAAGGATAAGAAGGGCAGATACTACAACTATGCCGACTTTCTGTCGGAGCTCGATATGTCCGACTCCAACTACAACT GGGAAGATCCAATGAATCGCGTCCAGCCGAAGGAACCGCCGACCCACAGCATCGACGGTGGGTACATCATCAA CCCGACCCGGCTCGCCCA                           ]




>consensus_3355#0
CCGCCCACGCGTCCGCCTGGGCATCCGTGAACGTGCCAGCAGAAGTGCAGAAATAGTGTT
TTACCTATAAACCTTTGGTCCGAGTGAAATTGTGTGTGGAATAGCAGTGAGAAAGGAGTG
CAGTGAGTGGTGGAGTCCTGTAGAACAGACAGTGTAGTGGGAGCTACCGGAAGCTCCAGC
AAATTATTTGCCCCGTACCGGTGCCCAACTTCAACAAGCAAACAGAACGCGTCCCCGGCA
CGCGCAGCACAGCCATGCGGTGGAAGTTACTTCTGCTGCTTTTCTGTGCGGTATCGCTGA
TCTCCCTATCAACCAGTGCCGCCGCAGAGGAGCACGAGCAAGAGCAGGATGACGCAACGG
ACGACGACTACGATGCGGTAGCGGCAGAGAATGAGGAGCAAACCGAACCGGAGGAGCAAA
CCGATCCAAGCGACGAACCGGAAGACACCGATCAAAAAACGAACGAGGACGTGATCGACG
TCGACACGGACGCAGTGGACGAGGGCAAGGATAAGAAGGGCAGATACTACAACTATGCCG
ACTTTCTGTCGGAGCTCGATATGTCCGACTCCAACTACAACTGGGGAAGATCCAATGAAT
CGCGTCCAGCCGAAGGAACCGCCGACCCACAGCATCGACGGTGGGTACATCATCAACCCC
GACCCGGCTCGCCCAGATCCGGCGCAACTTCCTGTACCCGTT

consensusID : consensus_3355#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 583
fasta sequence

                              [CCGCAAGACAACGCCCAAAGCGGTTGGGCATCCTGGGCATCCGTGAACGTGCCAGCAGAAGTGCAGAAATAGTGTTTTACCTATAAGCCTTTGGTCCGAGTGAAATTGTGTGTGGAATAGCAGTGAGAAAGGAGTGCAGTGAGTGGTGGAGTCCTGTAGAACAGACAGTGTAGTGGGAGCTACCGGAAGCTCCAGCAAATTATTTGCCCCGTACCGGTGCCCAACTTCAACAAGCAAACAGAACGCGTCCCCGGCACGCGCAGCACAGCCATGCGGTGGAAGTTACTTCTGCTGCTTTTCTGTGCGGTATCGCTGATCTCCCTATCAACCAGTGCCGCCGCAGAGGAGCACGAGCAAGAGCAGGATGACGCAACGGACGACGACTACGATGCGGTAGCGGCAGAGAATGAGGAGCAAACCGAACCGGAGGAGCAAACCGATCCAAGCGACGAACCGGAAGACACCGATCAAAAAACGAACGAGGACGTGATCGACGTCGACACGGACGCAGTGGACGAGGGCAAGGATAAGAAGGGCAGATACTACGACTATGCCGACTTTCTGTCGGAGCTCGATATGTCCG]

[+] EMBL BM644081             [CCGCAAGACAACGCCCAAAGCGGTTGGGCATCCTGGGCATCCGTGAACGTGCCAGCAGAAGTGCAGAAATAGTGTTTTACCTATAAGCCTTTGGTCCGAGTGAAATTGTGTGTGGAATAGCAGTGAGAAAGGAGTGCAGTGAGTGGTGGAGTCCTGTAGAACAGACAGTGTAGTGGGAGCTACCGGAAGCTCCAGCAAATTATTTGCCCCGTACCGGTGCCCAACTTCAACAAGCAAACAGAACGCGTCCCCGGCACGCGCAGCACAGCCATGCGGTGGAAGTTACTTCTGCTGCTTTTCTGTGCGGTATCGCTGATCTCCCTATCAACCAGTGCCGCCGCAGAGGAGCACGAGCAAGAGCAGGATGACGCAACGGACGACGACTACGATGCGGTAGCGGCAGAGAATGAGGAGCAAACCGAACCGGAGGAGCAAACCGATCCAAGCGACGAACCGGAAGACACCGATCAAAAAACGAACGAGGACGTGATCGACGTCGACACGGACGCAGTGGACGAGGGCAAGGATAAGAAGGGCAGATACTACGACTATGCCGACTTTCTGTCGGAGCTCGATATGTCCG]




>consensus_3355#1
CCGCAAGACAACGCCCAAAGCGGTTGGGCATCCTGGGCATCCGTGAACGTGCCAGCAGAA
GTGCAGAAATAGTGTTTTACCTATAAGCCTTTGGTCCGAGTGAAATTGTGTGTGGAATAG
CAGTGAGAAAGGAGTGCAGTGAGTGGTGGAGTCCTGTAGAACAGACAGTGTAGTGGGAGC
TACCGGAAGCTCCAGCAAATTATTTGCCCCGTACCGGTGCCCAACTTCAACAAGCAAACA
GAACGCGTCCCCGGCACGCGCAGCACAGCCATGCGGTGGAAGTTACTTCTGCTGCTTTTC
TGTGCGGTATCGCTGATCTCCCTATCAACCAGTGCCGCCGCAGAGGAGCACGAGCAAGAG
CAGGATGACGCAACGGACGACGACTACGATGCGGTAGCGGCAGAGAATGAGGAGCAAACC
GAACCGGAGGAGCAAACCGATCCAAGCGACGAACCGGAAGACACCGATCAAAAAACGAAC
GAGGACGTGATCGACGTCGACACGGACGCAGTGGACGAGGGCAAGGATAAGAAGGGCAGA
TACTACGACTATGCCGACTTTCTGTCGGAGCTCGATATGTCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3355#0      ----------CCGCCCAC-GCGTCCG-----CCTGGGCATCCGTGAACGTGCCAGCAGAA 44
consensus_3355#1      CCGCAAGACAACGCCCAAAGCGGTTGGGCATCCTGGGCATCCGTGAACGTGCCAGCAGAA 60
                                 ******  ***   *     *****************************

consensus_3355#0      GTGCAGAAATAGTGTTTTACCTATAAACCTTTGGTCCGAGTGAAATTGTGTGTGGAATAG 104
consensus_3355#1      GTGCAGAAATAGTGTTTTACCTATAAGCCTTTGGTCCGAGTGAAATTGTGTGTGGAATAG 120
                      ************************** *********************************

consensus_3355#0      CAGTGAGAAAGGAGTGCAGTGAGTGGTGGAGTCCTGTAGAACAGACAGTGTAGTGGGAGC 164
consensus_3355#1      CAGTGAGAAAGGAGTGCAGTGAGTGGTGGAGTCCTGTAGAACAGACAGTGTAGTGGGAGC 180
                      ************************************************************

consensus_3355#0      TACCGGAAGCTCCAGCAAATTATTTGCCCCGTACCGGTGCCCAACTTCAACAAGCAAACA 224
consensus_3355#1      TACCGGAAGCTCCAGCAAATTATTTGCCCCGTACCGGTGCCCAACTTCAACAAGCAAACA 240
                      ************************************************************

consensus_3355#0      GAACGCGTCCCCGGCACGCGCAGCACAGCCATGCGGTGGAAGTTACTTCTGCTGCTTTTC 284
consensus_3355#1      GAACGCGTCCCCGGCACGCGCAGCACAGCCATGCGGTGGAAGTTACTTCTGCTGCTTTTC 300
                      ************************************************************

consensus_3355#0      TGTGCGGTATCGCTGATCTCCCTATCAACCAGTGCCGCCGCAGAGGAGCACGAGCAAGAG 344
consensus_3355#1      TGTGCGGTATCGCTGATCTCCCTATCAACCAGTGCCGCCGCAGAGGAGCACGAGCAAGAG 360
                      ************************************************************

consensus_3355#0      CAGGATGACGCAACGGACGACGACTACGATGCGGTAGCGGCAGAGAATGAGGAGCAAACC 404
consensus_3355#1      CAGGATGACGCAACGGACGACGACTACGATGCGGTAGCGGCAGAGAATGAGGAGCAAACC 420
                      ************************************************************

consensus_3355#0      GAACCGGAGGAGCAAACCGATCCAAGCGACGAACCGGAAGACACCGATCAAAAAACGAAC 464
consensus_3355#1      GAACCGGAGGAGCAAACCGATCCAAGCGACGAACCGGAAGACACCGATCAAAAAACGAAC 480
                      ************************************************************

consensus_3355#0      GAGGACGTGATCGACGTCGACACGGACGCAGTGGACGAGGGCAAGGATAAGAAGGGCAGA 524
consensus_3355#1      GAGGACGTGATCGACGTCGACACGGACGCAGTGGACGAGGGCAAGGATAAGAAGGGCAGA 540
                      ************************************************************

consensus_3355#0      TACTACAACTATGCCGACTTTCTGTCGGAGCTCGATATGTCCGACTCCAACTACAACTGG 584
consensus_3355#1      TACTACGACTATGCCGACTTTCTGTCGGAGCTCGATATGTCCG----------------- 583
                      ****** ************************************                 

consensus_3355#0      GGAAGATCCAATGAATCGCGTCCAGCCGAAGGAACCGCCGACCCACAGCATCGACGGTGG 644
consensus_3355#1      ------------------------------------------------------------
                                                                                  

consensus_3355#0      GTACATCATCAACCCCGACCCGGCTCGCCCAGATCCGGCGCAACTTCCTGTACCCGTT 702
consensus_3355#1      ----------------------------------------------------------